prot_C-linearis_contig79.15409.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15409.1
Unique Nameprot_C-linearis_contig79.15409.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length236
Homology
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: D8LJF7_ECTSI (Photosystem II oxygen evolution complex protein PsbP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF7_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 2.000e-117
Identity = 188/239 (78.66%), Postives = 201/239 (84.10%), Query Frame = 0
Query:    1 MLRTVALAAMIGVAHGFVTPNVVR--SAVSAERHAAARTSMSAEGQGQGRLDRAQFLT--AAVAASAAILPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL 235
            MLR V  AA++G ++GFV PN VR  S  + ERH      MSAEG      DRAQFLT  AAVAASA +LPL A+ADE      QVKLVT+KLGG+LEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVD+VDPTTLILLTNSPVKSDTELSTLG+ TQVG KLSKGRDMELVSARDR+TEGIR+YDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAW KQE  FKTIVDSFLPRL
Sbjct:    1 MLRVVTFAAVVGCSNGFVAPNAVRAGSNPTLERHT---VRMSAEGPS----DRAQFLTTSAAVAASAVMLPLVAVADEGETGSKQVKLVTTKLGGKLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDLVDPTTLILLTNSPVKSDTELSTLGSATQVGEKLSKGRDMELVSARDRVTEGIRLYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWEKQEEPFKTIVDSFLPRL 232          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A6V2XVF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XVF7_HETAK)

HSP 1 Score: 161 bits (407), Expect = 8.960e-46
Identity = 93/228 (40.79%), Postives = 139/228 (60.96%), Query Frame = 0
Query:   10 MIGVAHGFVTPNVVRSAVSAERHAAARTSMSAEGQGQGRLDRAQFLTAAVAASA-AILPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCP-EKAWSKQEVTFKTIVDSFLPRL 235
            ++G  + FV P   RS+  A +   A T+       +G + R + L AA AA A A +P+ A A+ +     QV+  TS++GG ++P+ DV+KG++L +P GW+ +    GEY VK VD+V+    I ++ +PVKS T +  LG V  VG KL+  R  EL+SA D+ITE IR Y FEFK G   E+  LS+NK +LW+L+   P EK+W+K++  ++ +  SFLPRL
Sbjct:   14 LVGSLNAFVVP--ARSSGVASKMQLAMTA-------EGAMGRREVLAAATAAVATATVPIVAFAEPE-----QVERATSRMGGTMDPYNDVNKGFKLMRPGGWDAFSNAPGEYDVKFVDLVNKAETITVSTTPVKSSTSIDALGEVGAVGAKLAASRGAELLSANDKITENIRAYTFEFKKGSSYEIYQLSINKGRLWSLSCVAPSEKSWAKRKEAYRVVAGSFLPRL 227          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7R9Y8Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.940e-37
Identity = 68/159 (42.77%), Postives = 102/159 (64.15%), Query Frame = 0
Query:   76 TAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPR 234
            +A V +V L  S+LGG LEP++D+ +G+RL  P  WN+++   G Y V+ VD+V+    +LL  SPVKSD  L  +GT  ++G KL+  R+ + VSA  R TEG+  YDFEF+     E  TL++ +N+LWNL++    K WSK++ +F  I  SF+P+
Sbjct:   65 SAAVEEVPLSKSRLGGVLEPYSDIQRGFRLMAPYSWNKFENGEG-YDVRWVDLVNVKENVLLRTSPVKSDASLEAIGTPEKIGEKLAASREAQCVSATARQTEGLLFYDFEFESKAAHEYATLAIARNRLWNLSVVTEPKNWSKRKASFDGIRKSFIPK 222          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7S4BPW2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPW2_CHRCT)

HSP 1 Score: 138 bits (347), Expect = 7.940e-37
Identity = 78/209 (37.32%), Postives = 122/209 (58.37%), Query Frame = 0
Query:   26 AVSAERHAAARTSMSAEGQGQGRLDRAQFLTAAVAASAAILPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPR 234
            A + ++ AA+ + +     G+  L R   L AA   S   L + +++ EDT          S++GG LEPF DV KGY+L KP+ WN++D   G Y VK  D+++P  ++ +++SPV + T +S LG V+ VG K +K R+ EL+SA++R  +G  +Y FE KG    E   L+VN+ KL+ ++     K W K+E  FK I+ SF+P+
Sbjct:   25 ATTGQQAAASASQLGTSAIGRRNLMRQSVLAAAALVS---LDVQSVSAEDT---------FSRMGGALEPFIDVQKGYKLYKPVAWNQFDADPGVYDVKFQDVIEPFEIVQVSSSPVTTATSVSALGDVSAVGVKFAKSRNAELISAKERDADGSLVYTFELKGEMYHEYLALAVNRGKLFRVSTVTSNKRWPKREELFKNIILSFVPK 221          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7S4JXM0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JXM0_9EUKA)

HSP 1 Score: 132 bits (333), Expect = 8.560e-35
Identity = 75/186 (40.32%), Postives = 108/186 (58.06%), Query Frame = 0
Query:   49 LDRAQFLTAAVAASAAI-LPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLP 233
            + R   + A  AA AA+ L  +A A+E+T          S+LGG LEPF D+ KGY+L KP GW +Y    G Y VK  DI++P   +++++SPV + T +S LG +  VG K +K R+ ELV A +R  +G  +Y  E KG    EL TLS+N+ KL+ +T     K WSK+   +  I+ SF+P
Sbjct:   39 MTRRHLVQAGGAAVAALGLASSASAEEET---------FSRLGGLLEPFVDIQKGYKLYKPSGWTQYSIDPGVYDVKFADIIEPFESVIVSSSPVATATSISALGDLPTVGAKFAKSRNAELVKATERTADGNLVYTLELKGDVYHELLTLSINRGKLFRVTATATNKRWSKRSELYSNIMLSFVP 215          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7S0W0N6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0N6_9CRYP)

HSP 1 Score: 130 bits (327), Expect = 5.510e-33
Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   78 EVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGG----GRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL 235
            E T  K   S++GG LEPF D++KG++L KP GWN++D   GEY +K  D+V+ + ++++    V++   +  LG V  +G KL+  +  ELVSA  R  +GI  Y F FK G    G RE+  L VNK +LW++T    EK W+K+E  +  ++ SF+P+L
Sbjct:  143 ESTDPKTKASRMGGLLEPFKDINKGFQLLKPRGWNQFDAAPGEYDIKWEDLVEKSEMVMVGTKEVQTAKSVDALGDVEALGKKLAAKKKAELVSAEKREVDGILFYKFIFKQGNEKVGAREVYQLCVNKGRLWSVTATTSEKRWAKREKFYDNVMMSFVPKL 304          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: B7G6V4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6V4_PHATC)

HSP 1 Score: 124 bits (310), Expect = 2.290e-31
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 0
Query:   85 VTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTE-LSTLGTVTQ-VGGKLSKGRDMELVSARDRITEGIRIYDFEFK-GGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL 235
            V +++GG LE F D  +G+R+  P GWN+++G  G Y VK  D+VDP+  + ++++PVKS TE ++ LG   Q +G KL++ R+ +L+SA +R+TEGI  Y+F+F    G  +L  L V K +LW+L     EK W K+E  +  ++ SF+PRL
Sbjct:   64 VATRMGGLLEAFQDGPRGFRIMIPSGWNKFEGEVGAYDVKWQDLVDPSENVKISSTPVKSTTESVAALGDDVQALGLKLAEKRNAKLISASERLTEGILFYNFDFAIKDGTHQLLQLCVGKGRLWSLDANSKEKRWDKREEMYSNVLASFIPRL 217          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7S0NW19_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NW19_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 4.920e-31
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   87 SKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPR 234
            +K+GG LEP+ DV KGY+L +P  WN++D   G Y VK  D+++    + +++SPV S T +S LG +  V  K +K R+ ELVS+ +R  +G  +Y  E +G    E   L++N+ KL+ L+     K WSK++  +K +V SF+P+
Sbjct:   72 NKMGGALEPYIDVQKGYKLYRPTAWNQFDTDPGVYDVKFQDVINSFETVQVSSSPVSSATSISALGDIASVAAKFAKSRNAELVSSSERDADGSLLYSMELQGDMYHEYLALTINRGKLFRLSTVTSNKRWSKRQELYKNVVLSFVPK 219          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A8J6C9Q6_DIALT (PsbP domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9Q6_DIALT)

HSP 1 Score: 120 bits (302), Expect = 4.810e-30
Identity = 66/187 (35.29%), Postives = 110/187 (58.82%), Query Frame = 0
Query:   49 LDRAQFLTAAVAASAAILPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL 235
            L R + ++AA+A++A  LPL AL       V ++   T+++GG L+ F+D+SKG+ + KP  WN++DGT GEY  K  D++  T  I++++SPV S   +  LG+ +++G K++K RD+ LVSA       + +Y  E  G G  E    +V+K KLW +T    +K W+  +  +  ++ SF  R+
Sbjct:   45 LSRRRAVSAALASAA--LPLVALPALAADGVREISPSTTRMGGLLDAFSDISKGFSVYKPSTWNKFDGTPGEYEAKWQDLIGYTEQIIVSSSPVTSGKGIDALGSASELGAKVAKLRDLTLVSAEAVKVGELLMYIVELAGQGGHEAIGFTVSKGKLWRITTKASDKKWAANKEMYMNVITSFQNRI 229          
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Match: A0A7S2FXS9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXS9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.430e-30
Identity = 68/151 (45.03%), Postives = 92/151 (60.93%), Query Frame = 0
Query:   87 SKLGGQLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILL-TNSPVKSDT-ELSTLGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL 235
            +K+GG LEP+ DV KG+R+ KP GWN++D   G Y +K  D+V     +LL T +PVKS T  +  LG VT+VG KL KG+  EL+SA+    EGI  Y +EFK     +L  L VNK KLW++    P+K WSK    +   + SF+P L
Sbjct:   16 TKMGGLLEPYNDVGKGWRINKPSGWNQFDTLPGVYEMKWEDLVATNREVLLVTTTPVKSTTTSVDMLGDVTEVGRKLGKGKK-ELLSAKAVEKEGILFYMWEFKTEDGHQLLQLCVNKGKLWSVDASAPDKRWSKVSELYTNSLLSFMPTL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15409.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LJF7_ECTSI2.000e-11778.66Photosystem II oxygen evolution complex protein Ps... [more]
A0A6V2XVF7_HETAK8.960e-4640.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9Y8Q4_9STRA7.940e-3742.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4BPW2_CHRCT7.940e-3737.32Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4JXM0_9EUKA8.560e-3540.32Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0W0N6_9CRYP5.510e-3340.12Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
B7G6V4_PHATC2.290e-3141.56Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0NW19_9EUKA4.920e-3138.51Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A8J6C9Q6_DIALT4.810e-3035.29PsbP domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S2FXS9_9STRA5.430e-3045.03Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 93..231
e-value: 1.8E-19
score: 70.4
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3D3.40.1000.10coord: 83..232
e-value: 5.8E-30
score: 106.0
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 95..231
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 28..232
NoneNo IPR availablePANTHERPTHR31407:SF4PSBP-LIKE PROTEIN 1, CHLOROPLASTICcoord: 28..232
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..235
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.645

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:375392..378667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15409.1mRNA_C-linearis_contig79.15409.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 374737..390329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15409.1 ID=prot_C-linearis_contig79.15409.1|Name=mRNA_C-linearis_contig79.15409.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=236bp
MLRTVALAAMIGVAHGFVTPNVVRSAVSAERHAAARTSMSAEGQGQGRLD
RAQFLTAAVAASAAILPLAALADEDTAEVTQVKLVTSKLGGQLEPFADVS
KGYRLAKPLGWNRYDGTSGEYTVKMVDIVDPTTLILLTNSPVKSDTELST
LGTVTQVGGKLSKGRDMELVSARDRITEGIRIYDFEFKGGGRRELKTLSV
NKNKLWNLTLGCPEKAWSKQEVTFKTIVDSFLPRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand