prot_C-linearis_contig79.15402.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15402.1
Unique Nameprot_C-linearis_contig79.15402.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length171
Homology
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Match: D7G5M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M4_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 3.250e-76
Identity = 128/161 (79.50%), Postives = 133/161 (82.61%), Query Frame = 0
Query:   15 MALLFLLVGLVAADDVRLANEEGGVAT-MRRALTTSASECAAELSACDSDTSCITCRTEFFSKAEGCGLVEGIPCEDAQDATCCTLADEEENCENDTTFGNFLECLLEEHN----PLCGDNFIDISDCNGATGLASSWGVSTVLGFTTVAGLLVASFGFVV 170
            MALLFLLVGLVAADDVRLANEEGG+ T MRRALTTS SECAAELSAC SDTSC TC TEF SK E C     + CED QDA CCTLADEEENCE DTTFGNFLEC+ EE      P CGDN +DISDCNGA GLASSWGVSTVLGFTTVAGLLVA+FGFVV
Sbjct:    1 MALLFLLVGLVAADDVRLANEEGGMGTTMRRALTTSTSECAAELSACSSDTSCTTCVTEFLSKEEECSTEVSL-CEDVQDAVCCTLADEEENCETDTTFGNFLECIFEELFEALIPQCGDNLVDISDCNGAAGLASSWGVSTVLGFTTVAGLLVATFGFVV 160          
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Match: A0A6H5JTE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE3_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.060e-73
Identity = 120/156 (76.92%), Postives = 128/156 (82.05%), Query Frame = 0
Query:   15 MALLFLLVGLVAADDVRLANEEGGVATMRRALTTSASECAAELSACDSDTSCITCRTEFFSKAEGCGLVEGIPCEDAQDATCCTLADEEENCENDTTFGNFLECLLEEHNPLCGDNFIDISDCNGATGLASSWGVSTVLGFTTVAGLLVASFGFVV 170
            MALLFLLVGLVAADDVRLANEEGG+ TMRRALTTS S C AE SAC SD SC TC  EF SK + CG  + + CED QDA CCTLADEEENCE DTTFGN+LEC+ EE    CGDN +DISDCNGATGL SSW VSTVLGFTTVAGLLVA+FGFVV
Sbjct:    1 MALLFLLVGLVAADDVRLANEEGGMGTMRRALTTSTSACDAEASACISDNSCATCVYEFLSKTDECGTEDSL-CEDVQDAVCCTLADEEENCETDTTFGNYLECVFEELTTGCGDNLVDISDCNGATGLPSSWVVSTVLGFTTVAGLLVATFGFVV 155          
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Match: A0A6H5JWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-7
Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = 0
Query:   41 TMRRALTTSASECAAELSACDSDTSCITCRTEFFSKAEGC-GLVEGIPCEDAQDATCCTLADEEENCENDTTFGNFLECLLEEHNPLCGDNFIDISDCNGATGLASSWGVST 151
            +M  ++TTS +ECA E+ AC+ DT C+ C T + +  EGC     G  C+D + A CC +    + CE++    + L C + +    C    IDI DC  + G   ++G  T
Sbjct:  528 SMYPSMTTSETECAIEVEACNDDTECVDCATSYAALVEGCIESAGGTTCDDLEGAVCCAV----DGCEDNDALNDLLACSIADTG--CS---IDIGDC-ASDGSRGNYGSDT 629          
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Match: D7FK67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK67_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-6
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0
Query:   46 LTTSASECAAELSACDSDTSCITCRTEFFSKAEGCGLVE--GIPCEDAQDATCCTLADEEENCENDTTFGNFLECLLEEHNPLCGDNFIDISDC 137
            +TTS +ECA E+ AC+ DT C+ C T + +  EGC LV   G  C+D + A CC +    + CE++    + L C+    N   G +F D+ DC
Sbjct:    1 MTTSETECATEVVACNDDTECVDCFTSYAALVEGC-LVSAGGTTCDDLEGAVCCAV----DGCEDNDGLNDLLACI----NADTGCSF-DLGDC 84          
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Match: D7FTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.840e-5
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   52 ECAAELSACDSDTSCITCRTEFFSKAEGCGLVE--GIPCEDAQDATCCTLADEEENCENDTTFGNFLECLLEEHNPLCGDNFIDISDC-NGATGLASSWGVSTVLG 154
            ECA E+ AC+ DT C+ C T + +  EGC LV   G  C+D + A CC +    + CE++    + L C+    N   G +F D+ DC +G +G  S    +T  G
Sbjct:  391 ECATEVVACNDDTECVDCVTSYAALVEGC-LVSAGGTTCDDLEGAVCCAV----DGCEDNDGLNDLLACI----NADTGCSF-DLGDCASGGSGAISGSDTTTDTG 486          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15402.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5M4_ECTSI3.250e-7679.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTE3_9PHAE1.060e-7376.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWN7_9PHAE1.450e-733.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK67_ECTSI2.030e-637.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTV3_ECTSI1.840e-534.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.945
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:293078..295259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15402.1mRNA_C-linearis_contig79.15402.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 292093..299132 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15402.1 ID=prot_C-linearis_contig79.15402.1|Name=mRNA_C-linearis_contig79.15402.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp
MAVRTTTAYLLPAVMALLFLLVGLVAADDVRLANEEGGVATMRRALTTSA
SECAAELSACDSDTSCITCRTEFFSKAEGCGLVEGIPCEDAQDATCCTLA
DEEENCENDTTFGNFLECLLEEHNPLCGDNFIDISDCNGATGLASSWGVS
TVLGFTTVAGLLVASFGFVV*
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