prot_C-linearis_contig75.15074.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig75.15074.1
Unique Nameprot_C-linearis_contig75.15074.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length302
Homology
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Match: D7FQA1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA1_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 1.310e-156
Identity = 222/271 (81.92%), Postives = 239/271 (88.19%), Query Frame = 0
Query:   31 GASRHTLAQQXXXXXXXXXXRTGRNKISGVSSLRAIGVTSSVIETVAKGVLNLALANPQQATIECRINSSARNLVRGNLDQAKVDGLNWVTPMGMTLRTIALTLNEMKIQPAEIFRGKIKFKCPAEGEAVLNLDPHDFGNFLVHPLLTTADLPSGEFEFRREGTALDVELGRATFTGVWQGQPVVMEACQPERFGKIHARVAQRGRLTDLGIETLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMKF 301
            GA R+               R+      GVSSL+AIGVTSSVIE+VAKG+LNLALANP+QAT+EC +NSSA NLVRGNL+QAKVDGLNWVTPMGMTLRTIALTLNEM I+P+E+FRGKI FKCPAEGEA++ LD  DFGNFLVHPLLTTADLPSG+F+FRREGTALDVE GRATFTG WQGQPVVMEACQP+RFGKIHARVAQRGRLTDLGI TLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMKF
Sbjct:   43 GALRNVAVSSAPFQRKWRRRRSLNRGSGGVSSLKAIGVTSSVIESVAKGILNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALDVERGRATFTGSWQGQPVVMEACQPDRFGKIHARVAQRGRLTDLGIRTLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMKF 313          
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Match: A0A7R9XSM5_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XSM5_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 5.780e-16
Identity = 68/200 (34.00%), Postives = 91/200 (45.50%), Query Frame = 0
Query:  101 ARNLVRGNLDQAKVDGLNWVTPMGMTLRTIALTLNEMKIQ--PAEIFRGKIKFKCPAEGEAVLNLDPHDFGNFLVHPLLTTADLPSGEFEFRREGTALDVELGRATFTGVWQGQPVVMEACQPERFGKIHARVAQRGRLTDLGI--ETLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKP 296
            AR L  G L  A+V G  W +P  +T R + L   ++++    A   RG +  + PA GEA L LD  DF NFL HPL   A      FEF R   A D + G       +    VVM      R  ++        R T  G   ETL   +  FF  +VLDLDGT +R+RDM     +   P++   + + V R P P
Sbjct:   11 ARALALGELGGARVRGRGWSSPRDLTARDVELVARDVRVDWSAAMAMRGVVLTR-PARGEARLTLDGRDFENFLRHPLARRAARDEA-FEFERGDVASDDDDG-------YLECDVVMRDGGARRTVRMRPGEGSTVRATSRGDGDETLERALETFFERLVLDLDGTELRYRDMTIDARATA-PTVTFELDLCVKRFPSP 200          
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Match: A0A383VV08_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VV08_TETOB)

HSP 1 Score: 67.8 bits (164), Expect = 2.580e-9
Identity = 60/238 (25.21%), Postives = 110/238 (46.22%), Query Frame = 0
Query:   51 RTGRNKISGVSSLRAIGVTSSVIETVAKGVLNLALANPQQATIECRINSSARNLVRGNLDQAKVDGLNWVTPMGMTLRTIALTLNEMKIQP-AEIFRGKIKFKCPAEGEAVLNLDPHDFGNFLVHPLLTTADLPSGE---FEFRREGTALDVEL-----GRATFTGVWQG-----QPVVMEACQPERFGK---IHARVAQRG-RLTDLGIETLSEEMTHFFNTVVLDLDGTAVRFRDM 270
            R  R +++ V++     +T+ ++E V    L   L   +   ++  I+    +L+ G ++  K+ G  W +P+ +T + +  T+ E  + P A +F+ +I       G A +  +  DFGNFLVHPL+T A   + +   F F +    +         G   FTG W+G     Q  ++       FGK    HA     G R +  GI  + + ++ FF+++++DL G  + F  +
Sbjct:   42 RCSRGRLATVNTAHR-DLTADILENVTCLALRARLKECR--AVKTSISCDTWSLLAGRVNGVKIHGEGWRSPLNLTAQVLEATVGEASLDPSAVLFKQQILLTNVPVGTARVMFNAADFGNFLVHPLMTEAAKEAVQGHAFAFDQASVRIQPPSAVPPEGLVEFTGTWRGDGQRYQVRLLPVSGGAVFGKGVQAHAMPLSIGARSSSAGI--VEDCLSAFFSSLMVDLQGAQMSFMSL 274          
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Match: A0A7S0CB39_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB39_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.340e-9
Identity = 60/215 (27.91%), Postives = 94/215 (43.72%), Query Frame = 0
Query:  114 VDGLNWVTPMGMTLRTIALTLNEMKIQPAEIFRG-KIKFKCPAEGEAVLNLDPHDFGNFLVHPLLT--TADLPS----GEFEFRREGTALDVEL----------GRATFTGVWQGQPVVMEACQPERFGKIHARVAQRGRLTDLGIETLSEEMTH----FFNTVVLDLDGTAVRFRDMYHGYNSR-----------GEPSLRVTVSVVVHRLPKP 296
            V G  W +P+G+T R I   ++   +    + R  K+    PA G+A++ L+  DFGNF+ HPLL   T  LP     G FEF +E    DV++          G   F G   G+    E  +      I A  A     +   ++  S E++     FFN++V +LDGT + F+D+    +S                L V +++ V + P P
Sbjct:    9 VKGRGWESPLGLTCRAIEANVDRCSLDMNRVIRDRKLYLIEPAMGKAMIALNAKDFGNFITHPLLKAQTPCLPGKQEDGIFEFLKE----DVDIIANPNNKDDEGIVIFYGNCLGKRWRCELRRSSNKAVIKAVPASSNSDSSHLLQEESRELSTLISIFFNSLVFELDGTYLSFKDLSITTSSNRKRTNDRSINESNTQLLVALAIKVKKFPSP 219          
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Match: A0A250XS11_9CHLO (Uncharacterized protein n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XS11_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 4.490e-6
Identity = 55/249 (22.09%), Postives = 107/249 (42.97%), Query Frame = 0
Query:   93 IECRINSSARNLVRGNLDQAKVDGLNWVTPMGMTLRTIALTLNEMKIQPAEIF-RGKIKFKCPAEGEAVLNLDPHDFGNFLVHPLLTTAD---LPSGEFEFRREGTALDVELGRATF---TGVWQ---------------GQPVVMEACQP--ERFGKIHARVAQRGRL------------TDLGIETLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRG----EPSLRVTVSVVVHRLPKPENMKF 301
            +E ++ S   +L++G +  A V G +W +P  +T R +   + E+ I   ++  + +I       G   +  +  DFGNF+ HPL+T A    +    F F R+   +      A +   T V                 GQP V   C+   E      + ++   R+            +D+  + +SE++++FFN +++DL G  + F  M      +     +P + + +++ + + P P N+KF
Sbjct:   53 VEVKVESDGISLLQGKIQAASVSGRDWESPAYLTARELQFCVGEVAIDYTKLLTQQQIVLHNVPVGYGNVVFNARDFGNFITHPLVTCAAAKAVKGKSFIFNRDTACIQSGPRPAVYFSGTSVHHKRVYSAMMEPALDVHGQPCVRVLCKELTENPRGALSAISPNSRVVLQDSDYARPGPSDIPSQEVSEDLSNFFNHLLIDLQGVNLSFASMTIMTKDQNSTLTDPCVDLALTLKMVQFP-PLNLKF 300          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQA1_ECTSI1.310e-15681.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9XSM5_9CHLO5.780e-1634.00Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A383VV08_TETOB2.580e-925.21Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S0CB39_9STRA9.340e-927.91Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A250XS11_9CHLO4.490e-622.09Uncharacterized protein n=2 Tax=Chlamydomonas eust... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..301
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.849
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:68509..71498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15074.1mRNA_C-linearis_contig75.15074.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig75 68408..72213 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig75.15074.1 ID=prot_C-linearis_contig75.15074.1|Name=mRNA_C-linearis_contig75.15074.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MVSNVVWLLLLQVVPLGVTGFVSLPPLNVAGASRHTLAQQQQQQQQQQQR
RTGRNKISGVSSLRAIGVTSSVIETVAKGVLNLALANPQQATIECRINSS
ARNLVRGNLDQAKVDGLNWVTPMGMTLRTIALTLNEMKIQPAEIFRGKIK
FKCPAEGEAVLNLDPHDFGNFLVHPLLTTADLPSGEFEFRREGTALDVEL
GRATFTGVWQGQPVVMEACQPERFGKIHARVAQRGRLTDLGIETLSEEMT
HFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMK
F*
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