prot_C-linearis_contig74.15034.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15034.1
Unique Nameprot_C-linearis_contig74.15034.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length240
Homology
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BLAST of mRNA_C-linearis_contig74.15034.1 vs. uniprot
Match: A0A6H5JWG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG2_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 1.860e-119
Identity = 176/227 (77.53%), Postives = 192/227 (84.58%), Query Frame = 0 
Query:   13 LVLMVALLGFGACDAFYAGGVSVPRAPLADCGGRQQCQFQRHQRSTLGVNGGFEMPHQTSKRKKQGFGGGKAKKPAQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARVHARLKDTDEWLPVGNVCTQPGWTSQGVQGQKRLILDHAGEMYSQLRSGAGKKLVLEAGYGPEEGEEGGITVCKGIEYNGERVGVALDPLSEGPYFKGVAKGGFGADSSSAATLMDKKK 239
            ++ + ALLGFGACDAF AG + VPRA L   G    CQ QR Q        GFEMPHQT+KRKKQGFGGG+AKKP QQGKTLTTGEAVARHML EYNAIKAEGGKVAR++ARLKD D+W PVGNVCT+ GWT+QG QGQKRLILDHA EMYSQLRSGAGK LVLEAGYGP EG++G ITVCKGI+YNGERVGVALDPL +GP+FKGVAKGGFGAD SSAATLMDKKK
Sbjct:    7 VISVAALLGFGACDAFLAGRLGVPRASLVP-GPTTGCQHQRQQGGRPLSMSGFEMPHQTAKRKKQGFGGGRAKKPPQQGKTLTTGEAVARHMLSEYNAIKAEGGKVARLYARLKDADDWYPVGNVCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKMLVLEAGYGPVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADRSSAATLMDKKK 232
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BLAST of mRNA_C-linearis_contig74.15034.1 vs. uniprot
Match: D8LD44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD44_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 8.660e-119
Identity = 178/235 (75.74%), Postives = 193/235 (82.13%), Query Frame = 0 
Query:    5 PKQNTRSMLVLMVALLGFGACDAFYAGGVSVPRAPLADCGGRQQCQFQRHQRSTLGVNGGFEMPHQTSKRKKQGFGGGKAKKPAQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARVHARLKDTDEWLPVGNVCTQPGWTSQGVQGQKRLILDHAGEMYSQLRSGAGKKLVLEAGYGPEEGEEGGITVCKGIEYNGERVGVALDPLSEGPYFKGVAKGGFGADSSSAATLMDKKK 239
            P       +V + ALLGFGACDAF+AG + VP A L   G    CQ QR Q        GFEMPHQT KRKKQGFGGG+AKKP QQGKTLTTGEAVARHMLLEYNAIKAEGGKVAR++ARLKD D+W PVGNVCT+ GWT+QG QGQKRLILDHA EMYSQLRSGAGKKLVLEAGYG  EG++G ITVCKGI+YNGERVGVALDPL +GP+FKGVAKGGFGAD SSAATLMDKKK
Sbjct:   84 PSMLFSKRVVSVAALLGFGACDAFFAGRLGVPWASLVP-GATTGCQHQRQQGGRPLSMSGFEMPHQTEKRKKQGFGGGRAKKPPQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARLYARLKDADDWYPVGNVCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGSVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADKSSAATLMDKKK 317
[Close]
BLAST of mRNA_C-linearis_contig74.15034.1 vs. uniprot
Match: A0A836C865_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C865_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.160e-12
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 0 
Query:   79 FGGGKAKKPAQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARVHARLKDTDEWLPVGNVCTQPGWTSQGVQGQKRLILDHAGEMYSQLRSGAGKKLVLEAGYGPEEGEEGGITVCKGIEYNGERVGVALDPLSEGPYFKGVAKGGFGA--DSSSAA 232
             GG   KK +     + +G A AR     +  +      VA  +AR K ++ W  +  V  + G  +  VQGQKRL+LDHA +++  L      K  LE G+  EEG E  +TV     Y GE VGV LD  + GP++K   + G     D+ SAA
Sbjct:    1 MGGFGDKKSSSGSSNVGSGLAAARKQQKLFLELVEAKEPVAFAYARAKGSETWHRIAEVAAKGGNFAAAVQGQKRLMLDHAVQLHPVLLV---SKATLEVGFATEEGGE--VTVVAKDAYAGETVGVRLDAGNAGPFYKVTDQFGLSGRIDTKSAA 151
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15034.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWG2_9PHAE1.860e-11977.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD44_ECTSI8.660e-11975.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C865_9STRA6.160e-1234.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.87
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:617161..626205 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15034.1mRNA_C-linearis_contig74.15034.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 617161..626205 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15034.1 ID=prot_C-linearis_contig74.15034.1|Name=mRNA_C-linearis_contig74.15034.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
HVPRPKQNTRSMLVLMVALLGFGACDAFYAGGVSVPRAPLADCGGRQQCQ
FQRHQRSTLGVNGGFEMPHQTSKRKKQGFGGGKAKKPAQQGKTLTTGEAV
ARHMLLEYNAIKAEGGKVARVHARLKDTDEWLPVGNVCTQPGWTSQGVQG
QKRLILDHAGEMYSQLRSGAGKKLVLEAGYGPEEGEEGGITVCKGIEYNG
ERVGVALDPLSEGPYFKGVAKGGFGADSSSAATLMDKKK*
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