prot_C-linearis_contig73.14961.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14961.1
Unique Nameprot_C-linearis_contig73.14961.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length198
Homology
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 1.950e-87
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 0
Query:    1 MVGSILSSFVVAAALTVPSCSGFVTPA--VGIRTKFDAVSKVTMMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            M+ S+LS  V  + L   +C+GFVT A  +  RT+  A   ++M A   Q    WVP++PI+EAP+PGTAKSV+VADLDLCVAAD++GLLYV+GNKCPPANQPLSFSLV N IIKDPVLGTKIDIETGDV+EWCP+LLGKLLSPILG +PENAGV  F VR K G LEA +NVNA+ E+E +YWTGILDAQGKADGGYY
Sbjct:    2 MLSSLLSCGVSVSLLA--ACNGFVTTAGVLPTRTRAQASQGLSMAASGEQ----WVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVRQKGGNLEAKVNVNAKAEFEKSYWTGILDAQGKADGGYY 194          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7R9VVY4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVY4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.160e-48
Identity = 82/168 (48.81%), Postives = 107/168 (63.69%), Query Frame = 0
Query:   32 TKFDAVSKVTM-MAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            T F   S   + MAG  Q   ++VP +P+ + P PGTA S     L +C+A D  G +Y +G+KCPP NQPLSF  V  G I+DPVLGTK  ++TG+VV +WCPS +GKLL  +  P     GV VF V+     +E  ++VNA+  +ES YW+GILDAQGKADG YY
Sbjct:   23 TTFQTKSSTALNMAGLFQQSLKYVPCIPVEQLPKPGTATSGVAGGLAICIAVDPSGSIYALGDKCPPVNQPLSFGKVTAGAIEDPVLGTKFSLKTGEVVGDWCPSGIGKLLGGLFEP----VGVPVFPVKKSGANIEVQVDVNAKANFESQYWSGILDAQGKADGKYY 186          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: B8CBE4_THAPS (Rieske domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE4_THAPS)

HSP 1 Score: 158 bits (400), Expect = 6.920e-46
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0
Query:   38 SKVTMMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLV-VNGIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            S   + A K + K ++VP +   + P PG+A S     L +C+A D KG +Y +G+KCPP NQPLSF  V  +G I DPVLGTK D++TG+VV WCP+ LGKL+  +  P     GV V+ V++K  ++E  ++VN +  +E+ YW+GILDAQGKA+G YY
Sbjct:   24 STTALNAAKGKAKLQYVPCISTADLPKPGSATSGVAGGLAICIAVDPKGAVYALGDKCPPVNQPLSFGKVDKDGTIADPVLGTKFDLKTGEVVSWCPTGLGKLIGGLFDP----VGVPVYPVKAKGSVVEVQVDVNYKANFEAEYWSGILDAQGKANGKYY 180          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7S3P6K4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6K4_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.840e-45
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0
Query:   36 AVSKVTMMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            A S    MA K +   ++VP +PI + P PG+A S     L +C+A D+KG +Y +G+KCPP NQPLSF  V  G I DPVLG+K D++TG+VV WCPS LGKLL     P     GV  + V+     +E  ++VN +  +E+ YW+GILDAQGK +G YY
Sbjct:   44 AFSTALNMAAKYKPALKYVPCIPIEQLPKPGSATSGEAGGLAICIAVDEKGAIYALGDKCPPVNQPLSFGKVEGGCISDPVLGSKFDLKTGEVVSWCPSGLGKLLGGAFSP----TGVVTYPVKKSGKFVEVQVDVNYKFNFEANYWSGILDAQGKDNGKYY 201          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7S2IGL8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGL8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.150e-45
Identity = 74/157 (47.13%), Postives = 107/157 (68.15%), Query Frame = 0
Query:   42 MMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            + AG  ++K ++VP +   + P PG A S     L +C+A D+KG +Y +G+KCPP NQPLSF  V  G I+DPVLGTK +++TG+V  +WCP  +GKLL  +  P    +GV VF V++  G++E  ++VNA+  +ES YW+G+LDAQGKA+G YY
Sbjct:   31 LFAGPFKSKVQYVPCISTEDLPEPGFATSGVAGGLAICIAVDEKGSVYALGDKCPPVNQPLSFGRVRGGCIEDPVLGTKFNLKTGEVEGKWCPGGIGKLLGGLFEP----SGVPVFPVKTGKGVVEVQVDVNAKANFESQYWSGVLDAQGKANGKYY 183          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7S0AYK8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYK8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.610e-45
Identity = 79/186 (42.47%), Postives = 114/186 (61.29%), Query Frame = 0
Query:   13 AALTVPSCSGFVTPAVGIRTKFDAVSKVTMMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            AA  + S + F   +   RT         + AGK  +K ++VP +P+++ P+PG+A S     L +C+A D  G +Y +G+KCPP NQPLSF  V    I+DPVLGTK  ++TG+VV  WCPS +GKLL  +  P     GV  + V+ K   +E  ++VNA+  +ES YW+G+LDAQGK++G YY
Sbjct:   26 AATLIASAAAFAPQSANTRTN------TALEAGKLASKMQYVPCIPVDKLPAPGSATSGVAGGLAICIAVDPSGSVYALGDKCPPVNQPLSFGRVDGNSIEDPVLGTKFSLKTGEVVGAWCPSGIGKLLGGLFDP----IGVPTYPVKKKGANIEVQVDVNAKANFESQYWSGVLDAQGKSNGKYY 201          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7S4J166_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J166_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.760e-45
Identity = 81/172 (47.09%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   29 GIRTKFDAVSKVTM-MAGKPQTK-FEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            G  T F   S   + MA KP  +  ++VP +P++  P PGTA S     L +C+A D  G ++ +G+KCPP NQPLSF  V +G I+DPVLGTK  +++GDVV  WCPS +GKLL  +  P     GV V+ V+     +E  ++VNA+  YES YW+G+LDAQGKADG YY
Sbjct:  117 GQPTTFQTKSSTALSMAKKPLGQSLKYVPCIPVDSLPKPGTATSGVAGGLAICIAVDPSGSIFALGDKCPPVNQPLSFGKVADGTIEDPVLGTKFSLKSGDVVGAWCPSGIGKLLGGLFDPY----GVPVYPVKKSGANIEVQVDVNAKANYESQYWSGVLDAQGKADGKYY 284          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A6U3SB47_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SB47_9STRA)

HSP 1 Score: 155 bits (393), Expect = 7.670e-45
Identity = 75/162 (46.30%), Postives = 109/162 (67.28%), Query Frame = 0
Query:   37 VSKVTMM-AGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            VS+ T + A K   K +++P +  ++ P+PG+A S     L +C+A D+KG ++ +G+KCPP NQPLSF  VV G I DPVLGT+ D++TG+VV WCPS LGKL+  I  P     GV V+ V++K   +   ++VN +  +E+ YW+GILDAQGK++G YY
Sbjct:   22 VSRSTALNAKKVGPKLQYMPCISTDDLPAPGSATSGVAGGLAICIAVDEKGSVFALGDKCPPVNQPLSFGKVVGGTIADPVLGTQFDLKTGEVVSWCPSGLGKLIGGIFDP----VGVPVYPVQAKGKSVNVQVDVNYKANFEADYWSGILDAQGKSNGKYY 179          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A6S9DYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9DYT7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.790e-44
Identity = 73/165 (44.24%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   34 FDAVSKVTMMAGKPQTKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVNGIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            F   S   + AG  + K ++VP +   + P+PG A S     L +C+A D+ G +Y +G+KCPP NQPLSF  V  G I+DPVLGTK +++TG+V  +WCP  +GKLL  +  P    +GV V+ V++  G ++  ++VNA+  +ES YW+G+LDAQGKA+G YY
Sbjct:   24 FKTSSSTQLFAGPFKAKVQYVPCIATEDLPAPGQATSGVAGGLAICIAVDENGSVYALGDKCPPINQPLSFGRVAGGCIEDPVLGTKFNLKTGEVEGKWCPGGVGKLLGGLFDP----SGVPVYPVKTGKGTVDVQVDVNAKANFESQYWSGVLDAQGKANGKYY 184          
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Match: A0A7S1DYV2_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1DYV2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.990e-44
Identity = 73/150 (48.67%), Postives = 102/150 (68.00%), Query Frame = 0
Query:   49 TKFEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQPLSFSLVVN-GIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY 197
            +K ++VP + + + P PG A S     L +C+A D KG +Y +G+KCPP NQPLSF  V N G I+DPVLGTK  ++TGDVV WCP+ +GK++  +  P     GV  FKVR  SG ++  ++VNA+  +E+ YW+G+LDAQGKA+G YY
Sbjct:   50 SKKKFVPCLSLKDLPKPGFATSGVAGGLAICIAVDPKGSVYALGDKCPPVNQPLSFGKVNNDGTIEDPVLGTKFSLKTGDVVSWCPTGVGKIIGGLFEP----TGVPNFKVRQSSGTIQVEVDVNAKANFEANYWSGVLDAQGKANGKYY 195          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI27_ECTSI1.950e-8768.34Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7R9VVY4_9STRA3.160e-4848.81Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8CBE4_THAPS6.920e-4646.58Rieske domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S3P6K4_9STRA1.840e-4546.91Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2IGL8_9STRA2.150e-4547.13Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0AYK8_9STRA2.610e-4542.47Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4J166_9STRA6.760e-4547.09Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6U3SB47_9STRA7.670e-4546.30Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6S9DYT7_9STRA1.790e-4444.24Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1DYV2_9STRA4.990e-4448.67Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 49..175
e-value: 3.4E-6
score: 28.8
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 52..169
IPR012748Rieske-like [2Fe-2S] domain, NirD-typePFAMPF13806Rieske_2coord: 52..164
e-value: 1.9E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR21496:SF22coord: 38..173
NoneNo IPR availablePANTHERPTHR21496FERREDOXIN-RELATEDcoord: 38..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..197
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.709
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 53..167
score: 10.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:564417..568484 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14961.1mRNA_C-linearis_contig73.14961.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 564280..569506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14961.1 ID=prot_C-linearis_contig73.14961.1|Name=mRNA_C-linearis_contig73.14961.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=198bp
MVGSILSSFVVAAALTVPSCSGFVTPAVGIRTKFDAVSKVTMMAGKPQTK
FEWVPVVPINEAPSPGTAKSVFVADLDLCVAADDKGLLYVIGNKCPPANQ
PLSFSLVVNGIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGPEPEN
AGVNVFKVRSKSGILEAYLNVNARQEYESAYWTGILDAQGKADGGYY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
IPR012748Rieske-like_NirD
IPR017941Rieske_2Fe-2S