prot_C-linearis_contig73.14943.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14943.1
Unique Nameprot_C-linearis_contig73.14943.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length486
Homology
BLAST of mRNA_C-linearis_contig73.14943.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.460e-49
Identity = 122/242 (50.41%), Postives = 146/242 (60.33%), Query Frame = 0
Query:  242 SLEDRLKKAIDRGDALAIQSIYDEAMRNPGASMKSSKTKIRKKCRNWLNKRAGE----EQKQLQASQATQAIPVXXXXXXXXXXXXXXXXWATQRLTQFEIFCPNHIAGYLIGTRGQTVNRLMRESRAKIVLKTYQDRSGHDVVITGPPAAVQTARHLVGQFYRSKGVEPTTLPPPSTAVRVGALATPPSPRXXXXXXXXXXXXXLPNPAVPAEAMIRRLGRATSERMEAAGPRGVGLQRAP 479
            SLE RLKKAI+RG+ALA+Q+I+DEA + PGA MK    KI+KKC+ WLNK+ GE    +Q+ LQA+Q     P                  A QR T++E+FCPN IAG +IG  GQTVNRLM+ESRA+IVLKTY D++GHDVVITG P AV T R LV  FYRSKG+EPT L PPS               XX           LP+P +P EAMI  LGR  +  M  AGP      RAP
Sbjct:  494 SLEVRLKKAIERGNALAVQAIHDEADQTPGADMK----KIKKKCKKWLNKKEGEMREEQQRLLQANQPPPN-PALGLRQAGPGFGVPTPPMAAQRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXX----XXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRT--MAGAGPAAAVGMRAP 724          
BLAST of mRNA_C-linearis_contig73.14943.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.840e-46
Identity = 119/191 (62.30%), Postives = 143/191 (74.87%), Query Frame = 0
Query:  242 SLEDRLKKAIDRGDALAIQSIYDEAMRNPGASMKSSKTKIRKKCRNWLNKRAGEEQKQLQASQATQAIPVXXXXXXXXXXXXXXXXWATQRLTQFEIFCPNHIAGYLIGTRGQTVNRLMRESRAKIVLKTYQDRSGHDVVITGPPAAVQTARHLVGQFYRSKGVEPTTLPPPSTAVRV----GALATPPSP 428
            SLE RLKKAID G+ LA+QSIYDEA + PGASMK    KI+KKC+ +LNK+AGE+QK  QASQ     PV   XXXXXXXXXXX     QR TQ ++FCPN+IA  LIG +GQTVN+LM++SRAKIV+K Y DRSG+DV+ITG P AV+TA+ LV +FYRSKG +P+ LPPPS+AV      GA A P  P
Sbjct:  684 SLEVRLKKAIDSGNTLAVQSIYDEADQTPGASMK----KIKKKCQRYLNKKAGEDQKLQQASQPA---PVRGAXXXXXXXXXXX----AQRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEGARARPAQP 863          
BLAST of mRNA_C-linearis_contig73.14943.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.340e-43
Identity = 121/250 (48.40%), Postives = 147/250 (58.80%), Query Frame = 0
Query:  242 SLEDRLKKAIDRGDALAIQSIYDEAMRNPGASMKSSKTKIRKKCRNWLNKRAGE----EQKQLQASQAT--------QAIPVXXXXXXXXXXXXXXXXWATQRLTQFEIFCPNHIAGYLIGTRGQTVNRLMRESRAKIVLKTYQDRSGHDVVITGPPAAVQTARHLVGQFYRSKGVEPTTLPPPSTAV---------RVGALATPPSPRXXXXXXXXXXXXXLPNPAVPAEAMIRRLGRATSERMEAAGP 470
            SLE RL+KAI+RG+ALA+Q+I+DEA + PGA MK    K++KKC+ WLNK+ GE    +Q+ LQA+Q          QA P                  A QR TQ+E+FCPN IAG +IG  GQTVNRLM+ESRA+IVLK Y D++GHDVVITG P A  TAR LV  FYRSKG+EPT LPP              R G +A    PR             LP+P +P EAMI  LGR  +  M  AGP
Sbjct:  636 SLEVRLRKAIERGNALAVQAIHDEADQTPGADMK----KMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAA-----AAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQA--TARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVA----PRAR-----------LPDPMMPTEAMIGHLGRGRT--MAVAGP 857          
BLAST of mRNA_C-linearis_contig73.14943.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.040e-10
Identity = 55/154 (35.71%), Postives = 69/154 (44.81%), Query Frame = 0
Query:  343 HIAGYLIGTRGQTVNRLMRESRAKIVLKTYQDRSGHDVVITGPPAAVQTARH----------------------------LVG-----------------------------------QFYRSKGVEPTTLPPPSTAVRV-----GALATPPSP 428
            +IA  LIG +GQTV++LM+ESRAKIV+K Y DRSG+DVVITG P AV+ ++                             +VG                                   +FYRSKG +PT LPPPS+AV       GA A P  P
Sbjct:   52 NIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARARPAQP 205          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX18_ECTSI2.460e-4950.41KH domain containing protein n=1 Tax=Ectocarpus si... [more]
D7FX21_ECTSI2.840e-4662.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8V2_9PHAE2.340e-4348.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKP4_9PHAE5.040e-1035.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..179
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 333..396
score: 12.684
IPR004087K Homology domainSMARTSM00322kh_6coord: 332..401
e-value: 7.8E-10
score: 48.7
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 323..404
e-value: 1.3E-11
score: 45.8
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 333..404
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 337..396
e-value: 3.3E-11
score: 42.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:220630..224078 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14943.1mRNA_C-linearis_contig73.14943.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 220630..224078 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14943.1 ID=prot_C-linearis_contig73.14943.1|Name=mRNA_C-linearis_contig73.14943.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=486bp
MGAGGGLAGEAGARCAGAAPVRASLEAVQRFVAFTTSVRPAQQQQQQQQG
VTLENIKRFFAGWVDPDVVELYYETTRDTNATVRQCQEIVQQVVTHEKHA
DAAGTIARPQPPPSSWQQPKPYSAADAAAAAAAAAAREQAGRVAAARAVT
VERAMARVAAQAESEREAKEAAAADTKRKAYAEAEAEDARRAWRQQQEQQ
EQGQRERAAATAAGAAMSGSGGGGGGSGGGGDGGGATETVASLEDRLKKA
IDRGDALAIQSIYDEAMRNPGASMKSSKTKIRKKCRNWLNKRAGEEQKQL
QASQATQAIPVPRGAGAGGAGAAAAAAWATQRLTQFEIFCPNHIAGYLIG
TRGQTVNRLMRESRAKIVLKTYQDRSGHDVVITGPPAAVQTARHLVGQFY
RSKGVEPTTLPPPSTAVRVGALATPPSPRAGAFATPPSPRAGLPNPAVPA
EAMIRRLGRATSERMEAAGPRGVGLQRAPPPPPFLS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1