prot_C-linearis_contig72.14877.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig72.14877.1
Unique Nameprot_C-linearis_contig72.14877.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1022
Homology
BLAST of mRNA_C-linearis_contig72.14877.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI)

HSP 1 Score: 669 bits (1727), Expect = 5.040e-226
Identity = 435/702 (61.97%), Postives = 511/702 (72.79%), Query Frame = 0
Query:   12 KYNSLKSTFEARLASLADTVRRAVENIHQDQVLQELSASKNTREFAPAHAHVLIKRHLASERDAFLHRLALKLADAEAEVARCTRRNEELGSSLSVLRGEATREAQSRVEVTSVNADIQELRREYQIALEDASAECRQLKGELSHAKRRSSVLKEDRDQHAAQSRSLEQALADAGEQKLEALRLERELGEEKSANAKLLSELTRAQQSLDGLASSHQKLKAQASSLQNDLNQRDRRLQLADVNRKKKEAQFRETVTRMESLMEEEAKESVSAIKNLRDKAMLAKDRLSTEVERLRGANGQLSTDLAEAKAKCVELDLRLQAALRSQETGVSAAAAREEVLRAEAEQARARADTMSQSLAEAVREQSGMLIETANAKVAAEVLEARSRTAEVEMARAAGRETERAQAFAIERTLPTVTGPGWEVDNILAVKLEEASKHITELRTVLRQEVRRREAAEAEVSEAQGYLNSSRQELGELRHLAWKLEQMGRNSIVHIDEKNKAIKQLEDELHVRGV--TVAGVQEEVEGVQVGIEREGSRIRGGTSQVSPSAPRVSADGQGASGGLQEARRQ-AQRRTLPHAFSS---GKQL-LTELSGLRAELQCVTTQLSTTKAESEEFMRQCAGGVAARVERLVRALQQAGREQLAAQRQASEAIAAGAKDKEAFEKLMRVVQGISTTLLDGLGVTMPTCLGGGSDVGEEPE 706
            +Y+SLK+TFEARLASLA T+R AVE+  QDQVL +L+AS+NTREFAPAHA  LIK++LASERD F H LA++LA+ EAE+ RC+R NEEL S ++VL+GEA R  +SR E  +V+ADIQELRREYQIALED+S ECRQL+ ELSH+KRRSSVLK +RD+ AAQSRSL+QALADAG ++LE  RL  EL EEKS   KL SEL +AQQ LD LASSHQ+LK Q   L+ DL QRDRRLQLAD N++K EA+FRE VTRMESLME EAK+  +AIKNLRDKA+LAK+RLSTEVERLRG NG L   +A A+A+  EL+LRLQAAL+S+ET  +AAAAREE LRA AEQAR RADTMSQSLAEA+REQSG+L ETANAKVAAEVLEA+SR AEVE                                N+LA KL+EAS HI+ELRTVLRQEVRRREAAEAEVSEAQGYL SSRQELGELRHLAWKLEQMGRNS  H+D  ++A+  LE ELH RGV  TV G     E  + G  RE  R + G S  S    R  ++G    GG +EA    A+RR++P A SS   G++L L  L+GLRAEL+CV TQL   KAE+EEF+R C   VA RVERL RA                   AAGA D+++ + L RVV+GIS+ LLD LGV MPTCL GG DVGE  E
Sbjct:    3 RYDSLKTTFEARLASLASTIRLAVESTQQDQVLVQLNASENTREFAPAHAQALIKQYLASERDTFSHDLAIRLAEVEAELLRCSRHNEELRSVVAVLKGEAARGERSRSEAIAVDADIQELRREYQIALEDSSVECRQLQAELSHSKRRSSVLKGERDEQAAQSRSLQQALADAGAKELEVTRLNEELREEKSRGVKLSSELAQAQQRLDALASSHQELKFQTQCLEKDLTQRDRRLQLADANKRKSEARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEVE--------------------------------NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGVAGTVGG-----EEARRGANREEER-KHGRSLPSGGWARGRSEG----GGKEEAGLLCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDVGERGE 662          
BLAST of mRNA_C-linearis_contig72.14877.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 4.080e-158
Identity = 370/675 (54.81%), Postives = 439/675 (65.04%), Query Frame = 0
Query:  297 RLSTEVERLRGANGQLSTDLAEAKAKCVELDLRLQAALRSQETGVSAAAAREEVLRAEAEQARARADTMSQSLAEAVREQSGMLIETANAKVAAEVLEARSRTAEVEMARAAGRETERAQAFAIERTLPTVTGPGWEVDNILAVKLEEASKHITELRTVLRQEVRRREAAEAEVSEAQGYLNSSRQELGELRHLAWKLEQMGRNSIVHIDEKNKAIKQLEDELHVRGVT-VAGVQEEVEGVQVGIEREGSRIRGGTSQVSPSAPRVSADGQGASGGLQEARRQ-AQRRTLPHAFSS---GKQL-LTELSGLRAELQCVTTQLSTTKAESEEFMRQCAGGVAARVERLVRALQQAGREQLAAQRQASEAIAAGAKDKEAFEKLMRVVQGISTTLLDGLGVTMPTCLGGGSDVGEEPEEATKRGLSELAAAIADAVSRAEENAKQALFSKQHRNPTKMADGRYRGGPLDGMVWRERSKDDFNMLAQLQKIEAESELQSLQARLDDMTEKYSRAVAEQETVDSTPLREERERAKEELARAARAHNGAVAALEATLAAEKSHLQDIRTRLERQTREHQVALAKADQRLLQTQEEXXXXXXXXXXXXXXXXRETARRVRMEKKYSELEERGLVSPRSVSPR-----IWRPETSSRKASGQVERTQAPQPTLPRAWSARVV 960
            RLSTEVERLRG NG L   +A+A+A+  EL+LRLQAAL+S+E   +A AAREE LRA AEQARARADTMSQSLAE                                                                 +LA KL+EAS HI+ELRTVLRQEVRRREAAEAEVSEAQG+                           H+D  ++A++ LE ELH RGV    G  E   G     ERE  R     S +S    R  ++G    GG +EA    A+RR +P   SS   G++L L  L+GLRAEL+CV TQL   KAE+E F+R C   VA RVERL RA++QAG++Q  AQRQASEA AAGA D+++ + L RVV+GIS+ LLD L VTMPT L GG + GE  +E  +RGL EL AA+ DA+S+ +E AKQA+ ++ H +     +GRY    +DGMVW ERSKDDFNMLAQLQKIEAES+LQSLQARLDDMTEKYSRA+A+QETVDSTPLREE+ERAK+ELARAARAH+G V+ALE TLAAEKSH QD+R +LERQTREHQVALA  DQRLLQTQ  XXXXXXXXXXXXXXX RE ARR R++KKYSELE+RGLVSPRSV        + RPE ++RK SG+ ER+Q  Q TLPR  S R V
Sbjct:  299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE-----------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGF--------------------------AHMDGNSQAVRHLEGELHARGVAGTVGGGEAGRGPLREEEREDGR-----SMLSGGRARGRSEG----GGKEEAGLLCARRRRVPQGLSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQKQAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQEMLERGLEELTAAVTDALSKVKERAKQAVPAQPHGDSLAPGNGRYCMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQXXXXXXXXXXXXXXXXXDRECARRARLDKKYSELEDRGLVSPRSVXXXXXXXXVRRPEATTRKFSGESERSQLAQATLPRPSSVRYV 873          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4R8_ECTSI5.040e-22661.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLZ7_9PHAE4.080e-15854.81Reverse transcriptase domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 178..212
NoneNo IPR availableCOILSCoilCoilcoord: 341..375
NoneNo IPR availableCOILSCoilCoilcoord: 122..160
NoneNo IPR availableCOILSCoilCoilcoord: 77..104
NoneNo IPR availableCOILSCoilCoilcoord: 220..247
NoneNo IPR availableCOILSCoilCoilcoord: 842..915
NoneNo IPR availableCOILSCoilCoilcoord: 255..275
NoneNo IPR availableCOILSCoilCoilcoord: 770..804
NoneNo IPR availableCOILSCoilCoilcoord: 449..483
NoneNo IPR availableCOILSCoilCoilcoord: 302..336
NoneNo IPR availablePANTHERPTHR34491FAMILY NOT NAMEDcoord: 83..913
NoneNo IPR availablePANTHERPTHR34491:SF9coord: 83..913

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:310080..323600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14877.1mRNA_C-linearis_contig72.14877.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig72 309152..323645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig72.14877.1 ID=prot_C-linearis_contig72.14877.1|Name=mRNA_C-linearis_contig72.14877.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1022bp
MDDPSAVVFREKYNSLKSTFEARLASLADTVRRAVENIHQDQVLQELSAS
KNTREFAPAHAHVLIKRHLASERDAFLHRLALKLADAEAEVARCTRRNEE
LGSSLSVLRGEATREAQSRVEVTSVNADIQELRREYQIALEDASAECRQL
KGELSHAKRRSSVLKEDRDQHAAQSRSLEQALADAGEQKLEALRLERELG
EEKSANAKLLSELTRAQQSLDGLASSHQKLKAQASSLQNDLNQRDRRLQL
ADVNRKKKEAQFRETVTRMESLMEEEAKESVSAIKNLRDKAMLAKDRLST
EVERLRGANGQLSTDLAEAKAKCVELDLRLQAALRSQETGVSAAAAREEV
LRAEAEQARARADTMSQSLAEAVREQSGMLIETANAKVAAEVLEARSRTA
EVEMARAAGRETERAQAFAIERTLPTVTGPGWEVDNILAVKLEEASKHIT
ELRTVLRQEVRRREAAEAEVSEAQGYLNSSRQELGELRHLAWKLEQMGRN
SIVHIDEKNKAIKQLEDELHVRGVTVAGVQEEVEGVQVGIEREGSRIRGG
TSQVSPSAPRVSADGQGASGGLQEARRQAQRRTLPHAFSSGKQLLTELSG
LRAELQCVTTQLSTTKAESEEFMRQCAGGVAARVERLVRALQQAGREQLA
AQRQASEAIAAGAKDKEAFEKLMRVVQGISTTLLDGLGVTMPTCLGGGSD
VGEEPEEATKRGLSELAAAIADAVSRAEENAKQALFSKQHRNPTKMADGR
YRGGPLDGMVWRERSKDDFNMLAQLQKIEAESELQSLQARLDDMTEKYSR
AVAEQETVDSTPLREERERAKEELARAARAHNGAVAALEATLAAEKSHLQ
DIRTRLERQTREHQVALAKADQRLLQTQEELDKAQQALEQAQFALERETA
RRVRMEKKYSELEERGLVSPRSVSPRIWRPETSSRKASGQVERTQAPQPT
LPRAWSARVVLEEARAKLRQDDDASTSTRGRQEIRVGRQGSVLDSHWPNL
EGIPAHASKGEGRAEQSVSPL*
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