prot_C-linearis_contig72.14874.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig72.14874.1
Unique Nameprot_C-linearis_contig72.14874.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length353
Homology
BLAST of mRNA_C-linearis_contig72.14874.1 vs. uniprot
Match: D7G4S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S1_ECTSI)

HSP 1 Score: 489 bits (1258), Expect = 2.130e-171
Identity = 264/334 (79.04%), Postives = 283/334 (84.73%), Query Frame = 0
Query:   19 MLLKLNYAAAAVGWMLTRLQAQAFSVVGFQKLSNPTHGAAAFPIPASTSPSTPRTLATAAWRSPSRGLPPSPMSTGGDAVESSVGTTSEERSVLDALIDQFTSPKSGNVTATVEEYLDLCDHAFLTHLRRRIEAEEAQSPMATALKHVEEEINMAMQRRLAAADSDLRYVLDQAPDIKKMEGSVRKMFREGKINMAFMVMTSMNLQRAKEAEGADNAVMLLTHLTTFIMMLQDERLNPEEKLLRVLLRTDCDGVRKSMLQDRLQLPNHDIFLETSPDKDKAQPHLLQLAITDMITQVENIGQAIDVGMTESLKGLQVEIDGVVAASKRPGPYKQ 352
            M+LK NY +A VGW+L R QA+AFSVVGFQK         A       S  T R L  AA R PSRGL P  M  GGDAV+SSVGT SEE SVLDALIDQFTSPKSGNVTATVEEYLDLCDHA LTHLR RIEAEEAQSP ATALKHVEEEINMAMQRRLAAADS+LR VLD APDIKKMEG +R +FREGK+NMAFMVM SMNLQRAK+AEGAD+AVMLLTHLTTFIMM+QDERLNPEEKLLR LLRTDCDGVRKS+LQDRLQLPN+D+FLE  PDKDK QPHLLQ AITDMITQVE+IGQAIDVGMT+SLKGLQVE++ VVA SKRPGPYKQ
Sbjct:    1 MILKWNYVSATVGWLLARRQAEAFSVVGFQKPQATACRTRALASSVPASSPTQRILDAAALRGPSRGLLPMHMLAGGDAVQSSVGTKSEEHSVLDALIDQFTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAITDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGSKRPGPYKQ 334          
BLAST of mRNA_C-linearis_contig72.14874.1 vs. uniprot
Match: A0A835YR16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR16_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.180e-40
Identity = 94/212 (44.34%), Postives = 133/212 (62.74%), Query Frame = 0
Query:  137 LCDHAFLTHLRRRIEAEEAQSPMATALKHVEEEINMAMQRRLAAADSDLRYVLDQAPDIKKMEGSVRKMFREGKINMAFMVMTSMNLQRAKEA-EGADNAVMLLTHLTTFIMMLQDERLNPEEKLLRVLLRTDCDG---VRKSMLQDRLQLPNH---DIFLETSPDKDKAQPHLLQLAITDMITQVENIGQAIDVGMTESLKGLQVEIDGVV 341
            +CD+ FL +L  RI      S   T L  V +EIN+AMQRRL AAD++LR VL  APD+KKME  +R++FR G+ +MAFMV+ +MNL +A+EA  GA+ AV +LTHL T IM +QD R+ PE +LLR+L+R   D     R+ +L+++L L      D     +PD+ +     LQ    +  TQ+E + +  D G+TE L+GL  EID V+
Sbjct:    1 MCDYGFLMYLNGRIGEAGPDSEEGTKLSAVAQEINVAMQRRLVAADANLRAVLANAPDLKKMEADLRRLFRTGQADMAFMVVLNMNLAQAREAGPGAEGAVAVLTHLNTAIMEMQDTRVAPEVRLLRMLMRASDDDNAEKRRDLLKEQLDLSGGGGADSSGLVTPDQLRDAIRELQ----EQATQIEKVSKEYDTGLTEKLRGLLREIDEVL 208          
BLAST of mRNA_C-linearis_contig72.14874.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.690e-11
Identity = 66/242 (27.27%), Postives = 123/242 (50.83%), Query Frame = 0
Query:  103 GTTSEERSVLDALIDQFTSPKSG-NVTATVEEYLDLCDHAFLTHLRRRIEAEEAQSPMATALKHVEEEINMAMQRRLAAADSDLRYVLDQAPDIKKMEGSVRKMFREGKINMAFMVMTSMNLQRAKEAEGADNAVMLLTHLTTFIMMLQDERLNPEEKLLRVLLRTDCDGVRKSMLQDRLQLPNHDIFL---ETSPDKDKAQPHLLQLAITDMITQVENIGQAIDVGMTESLKGLQVEIDGV 340
            G  ++ R+  + L+ +  + + G ++   VE   D  D  FLT L ++ +  E  +  A AL  + + IN  MQRR+A A   L+ +L    + ++ME +++ M   G+++ A +++   NLQ+A+EA+ A  AV +L  L        DE+++PE++L+R LLR      R ++L    +     +     ETS   D A P  ++  +  +I    N+G++ ++G  + L  +  E + V
Sbjct:   35 GLPTKVRAGYENLLGKLLNREDGESLEDAVETNYDQVDIQFLTLLNQKAQEAEG-TDAAAALTRLGDSINNTMQRRMAQASERLQKILTVG-NPERMEETIKAMAERGEVDDALVLLLQANLQQAEEAD-AGPAVGVLKRLGAAAQAALDEKVDPEKRLVRQLLRAKDREARLNILTKAFRQRAKVVLADGSETSEAPDVAPPKFIE-TVKGIIRNFGNVGES-ELGFAQQLDDMISEAEQV 271          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4S1_ECTSI2.130e-17179.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YR16_9STRA1.180e-4044.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSF0_ECTSI4.690e-1127.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:289514..293014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14874.1mRNA_C-linearis_contig72.14874.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig72 289514..293014 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig72.14874.1 ID=prot_C-linearis_contig72.14874.1|Name=mRNA_C-linearis_contig72.14874.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=353bp
TTALAAPSRSCLRVSVLEMLLKLNYAAAAVGWMLTRLQAQAFSVVGFQKL
SNPTHGAAAFPIPASTSPSTPRTLATAAWRSPSRGLPPSPMSTGGDAVES
SVGTTSEERSVLDALIDQFTSPKSGNVTATVEEYLDLCDHAFLTHLRRRI
EAEEAQSPMATALKHVEEEINMAMQRRLAAADSDLRYVLDQAPDIKKMEG
SVRKMFREGKINMAFMVMTSMNLQRAKEAEGADNAVMLLTHLTTFIMMLQ
DERLNPEEKLLRVLLRTDCDGVRKSMLQDRLQLPNHDIFLETSPDKDKAQ
PHLLQLAITDMITQVENIGQAIDVGMTESLKGLQVEIDGVVAASKRPGPY
KQ*
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