prot_C-linearis_contig72.14862.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig72.14862.1
Unique Nameprot_C-linearis_contig72.14862.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length54
Homology
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BLAST of mRNA_C-linearis_contig72.14862.1 vs. uniprot
Match: D7G4Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.680e-23
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0 
Query:    1 MTVVADALGLGNLPVSVQFVVIGLVVAHGLAFSYWLLRITTDQKRLEMRFKEE 53
            MT +A+ALGLGNLPV +Q+ VIGLVVAH LAFSYWLLRITTD+KRLEMRFKEE
Sbjct:    1 MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRFKEE 53
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig72.14862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q5_ECTSI5.680e-2383.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..53
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig72contigC-linearis_contig72:178189..181982 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig72.14862.1mRNA_C-linearis_contig72.14862.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig72 178189..181982 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig72.14862.1 ID=prot_C-linearis_contig72.14862.1|Name=mRNA_C-linearis_contig72.14862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=54bp
MTVVADALGLGNLPVSVQFVVIGLVVAHGLAFSYWLLRITTDQKRLEMRF
KEE*
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