prot_C-linearis_contig7.14633.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14633.1
Unique Nameprot_C-linearis_contig7.14633.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length283
Homology
BLAST of mRNA_C-linearis_contig7.14633.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.740e-24
Identity = 97/226 (42.92%), Postives = 120/226 (53.10%), Query Frame = 0
Query:   65 SKPKRSRDDEEPAEDLLSGASTTTSHDFGVQHTPSFADPVGVGG------RMGGHGSGPRSKKNKATLSESKPAQKLVATRSRFKIVHHHAIP-QEGKIVVATRGQSSHPGPSAAGEDGRATNASTXXXXXXXXXXGIESNLSGSSHGRAPLP-AKPSARAAANKTPAGSALSVVIDGSEAAFSHREAKGGWSAMGPLLAIQFFEERGVDCVAFLPRQRVDSIAPQ 282
            S+PKR R+ EEP  D    AS       G Q       P G+GG      R       P +KKNK  LS+S P + LVATR+RF+IVHHH  P Q+ + +VA R  S  P  + AGE  R T+ S                  GSS  R PL  A  S+R + + TP      VVIDG++ A  HR A G WSA G LLAIQFFE RGV CVAFLPR+R+  ++P+
Sbjct:  525 SRPKRGRE-EEPGMDSTGSASRARGGASGRQ-------PSGLGGLLDVIRRTASMNLQPPAKKNKVALSKSSPPKNLVATRARFQIVHHHDAPKQQQQQLVAHR--SKLPTLNTAGE-ARGTSKSK-----------------GSS--RVPLAGAALSSRPSRSTTP----KKVVIDGNDVALCHRGAHGQWSAQGALLAIQFFERRGVPCVAFLPRERMAGVSPR 716          
BLAST of mRNA_C-linearis_contig7.14633.1 vs. uniprot
Match: D7FTX8_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.480e-24
Identity = 96/238 (40.34%), Postives = 120/238 (50.42%), Query Frame = 0
Query:   65 SKPKRSRDDEEPAEDLLSGASTTTSHDFGVQHTPSFADPVGVGG------RMGGHGSGPRSKKNKATLSESKPA-------------QKLVATRSRFKIVHHHAIPQEGKIVVATRGQSSHPGPSAAGEDGRATNASTXXXXXXXXXXGIESNLSGSSHGRAPLP-AKPSARAAANKTPAGSALSVVIDGSEAAFSHREAKGGWSAMGPLLAIQFFEERGVDCVAFLPRQRVDSIAPQ 282
            S+PKR R+ EEP        S     + G Q       P G+GG      R       P +KKNK  LS+S P              Q LVATR+RF+IVHHH  P++ + +VA R  S  P  + AGE  R                   S   GSS  RAPL  A  S+R + + TP      VVIDG++ A  HR A G WSA GPLLAIQFFE+RGV CVAFLPR+R+  ++P+
Sbjct:  525 SRPKRGRE-EEPGMASTGSVSRARGGESGRQ-------PAGLGGLLDVIRRTASMNLQPPAKKNKVALSKSSPPKFSASVPRTALSLQNLVATRARFQIVHHHDAPKQQQQLVAHR--SKLPTLNTAGEARRT------------------SKSKGSS--RAPLAGAALSSRPSRSTTP----KKVVIDGNDVALCHRGADGQWSAQGPLLAIQFFEQRGVPCVAFLPRERMAGVSPR 728          
BLAST of mRNA_C-linearis_contig7.14633.1 vs. uniprot
Match: D7FTY5_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.910e-18
Identity = 88/273 (32.23%), Postives = 127/273 (46.52%), Query Frame = 0
Query:   20 IPGAAPRRTLTLNSATGGEGHATGRAGFR-QATSTT---GGGSEPSDMSSKPKRSRDDEEPAEDLLSGASTTTSHDFGVQHTPSFADPVGVGGRMGGHGSGPRSKKNKATLSESKPAQKLVATRSRFKIVHHHAIPQEGKIVVATRGQSSHPGPSAAGEDGRATNASTXXXXXXXXXXGIESNLSGSSHGRAPLPAKPSARAAANKTPAGSALS------VVIDGSEAAFSHREAKGGWSAMGPLLAIQFFEERGVDCVAFLPRQRVDSIAPQ 282
            + G AP  T+  N      G       F  Q  S T   GGGS PS    +PKR+R++E    ++ +     +      Q   +  + + +  RM   G     KK K+TL  S+  + L+ATR+RF+I+HHHA+P + ++V+      +     A+G  G AT ++                       RAPL  KPS      +              VVIDG++ A ++      WSA+ PLLAIQFF+ERGV CVAFLPR+RV  + PQ
Sbjct:  455 LAGPAPAATVKSNHRAPKNGWVAAVGAFHGQGASKTVWAGGGSGPS----RPKRNREEELTTAEITTRLRDPSKAPGQQQQQQTPDEMIDMVRRMASMGVATVPKKKKSTLDASREPKALIATRARFRIIHHHALPSQQQLVLYKPPTFN----IASGRSG-ATRSNQSSWVPPP---------------RAPLAIKPSTWTTPKQPXXXXXXXXXXSPLVVIDGTDIALTYWRTDDRWSALQPLLAIQFFKERGVPCVAFLPRERVYGVTPQ 703          
BLAST of mRNA_C-linearis_contig7.14633.1 vs. uniprot
Match: A0A6H5KJR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.920e-14
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 0
Query:  135 LVATRSRFKIVHHHAIPQEGKIVVATRGQSSHPGPSAAGEDGRATNASTXXXXXXXXXXGIESNLSGSSHGRAPLPAKPSARAAANKTPAGSALSVVIDGSEAAFSHREAKGGWSAMGPLLAIQFFEERGVDCVAFLPRQRVDSIAPQ 282
            L+ATR+RF+I+HHHA+P + ++V+     S+     A+G  G AT ++                 S     RAPL  KPS            +  VV+DG++ A ++      WSA+ PLLAIQFF+E GV CVAFLPR+RV S+  Q
Sbjct:  531 LIATRARFRIIHHHALPSQQQLVLYDPPTSN----IASGRSG-ATRSN---------------QSSWGPPARAPLAIKPSTWTTPKPXXXXXSPLVVLDGTDIALTYWRTDDRWSALQPLLAIQFFKEWGVPCVAFLPRERVCSVTLQ 658          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14633.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KK30_9PHAE4.740e-2442.92RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
D7FTX8_ECTSI8.480e-2440.34RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
D7FTY5_ECTSI2.910e-1832.23RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJR8_9PHAE7.920e-1438.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11980coord: 229..283
e-value: 2.1E-5
score: 26.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3881221..3882881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14633.1mRNA_C-linearis_contig7.14633.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3881221..3882881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14633.1 ID=prot_C-linearis_contig7.14633.1|Name=mRNA_C-linearis_contig7.14633.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
ATASERSPPPPKVERGPRGIPGAAPRRTLTLNSATGGEGHATGRAGFRQA
TSTTGGGSEPSDMSSKPKRSRDDEEPAEDLLSGASTTTSHDFGVQHTPSF
ADPVGVGGRMGGHGSGPRSKKNKATLSESKPAQKLVATRSRFKIVHHHAI
PQEGKIVVATRGQSSHPGPSAAGEDGRATNASTNTNANANANAGIESNLS
GSSHGRAPLPAKPSARAAANKTPAGSALSVVIDGSEAAFSHREAKGGWSA
MGPLLAIQFFEERGVDCVAFLPRQRVDSIAPQS
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