prot_C-linearis_contig7.14630.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14630.1
Unique Nameprot_C-linearis_contig7.14630.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length421
Homology
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BLAST of mRNA_C-linearis_contig7.14630.1 vs. uniprot
Match: D7FTY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY2_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 3.250e-174
Identity = 277/417 (66.43%), Postives = 330/417 (79.14%), Query Frame = 0 
Query:    7 LMPRLPR------AARACLMSSGRTRAFEVGQGGRLVIDMARAAAIVKVTTKWIDSCNVTTYRFPAGADVSSFERLGANADRTQ-DATDLTLLADEALAVVTLAQDQDRTADGWEGVYLVEAVVPELFSVDVLLAHGDVSVAKKLKGDCQVQLDRGDISVGTVRGESIRLSTGCGHVRVDELEGNVDVTATADVYARLINGAKVRIDTLGDGDASVTVGALYSSSAHITSAGNVSVSSCHGRIAIDTADTLGGVNLSSVNGTAQVSTGECGAKVHMDVLEEGTACDIRSDGGDVNVSMSQQVDADLDIKANSVELPSSFEGDALRGKAVGSIRSAAVGPSRAARYGSASSNSKDAGGGKIDLVGARGQSLRQYFPNDAATNTLRPKLSVTAKGGSVVVEILSWADNIARKFTTREAA 416
            ++ RLPR      A  AC  SSG  +   +GQGGRLVIDMA+AAA++KVTT+WIDSC+V   R PAG+D  S    GA    +  DA  L+L ADEA A VTLA D++  +   E  YL+EAVVPELFSV++L +HG+VSV+KK+KGDC+V+LDRGDI+VG VRGE+IRLSTG GH++VDELEGNVD+TAT++V ARLINGAKV+I+T G  D SV VGALYSS AHITSAGNV VSSCHGRIA+ TADT G VNLSSV+GTA VS GE GA VH+DVLEEGTA  IRS+GGD+NVS+SQQVDAD++I  + V++PS+F+GD  RG+AVGSI SA V PSRA R+GS SS   DAGGGKID+VGARGQSLRQYFP + AT ++RPKLSV A+GG VVVE LSWADNI RKF  REAA
Sbjct:   18 MLTRLPRXXXXPGALHACFTSSGHAQTIPIGQGGRLVIDMAKAAAVIKVTTQWIDSCSVEVSRLPAGSDGRSLAGAGAKEVLSNLDAAGLSLHADEAHAQVTLAHDKEHPSV--EDTYLIEAVVPELFSVELLASHGNVSVSKKIKGDCKVRLDRGDINVGIVRGETIRLSTGRGHIKVDELEGNVDITATSNVRARLINGAKVKINTTGHDDPSVNVGALYSSGAHITSAGNVGVSSCHGRIAVHTADTSGSVNLSSVSGTAHVSAGEGGATVHLDVLEEGTASHIRSNGGDINVSLSQQVDADVEITGDVVKVPSTFKGDTQRGRAVGSIYSAQVEPSRATRHGSTSST--DAGGGKIDMVGARGQSLRQYFPGNTATTSVRPKLSVVAEGGCVVVETLSWADNITRKFAAREAA 430
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTY2_ECTSI3.250e-17466.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34094FAMILY NOT NAMEDcoord: 24..408
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..420
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3868212..3871069 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14630.1mRNA_C-linearis_contig7.14630.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3868115..3871194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14630.1 ID=prot_C-linearis_contig7.14630.1|Name=mRNA_C-linearis_contig7.14630.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=421bp
MLLRKSLMPRLPRAARACLMSSGRTRAFEVGQGGRLVIDMARAAAIVKVT
TKWIDSCNVTTYRFPAGADVSSFERLGANADRTQDATDLTLLADEALAVV
TLAQDQDRTADGWEGVYLVEAVVPELFSVDVLLAHGDVSVAKKLKGDCQV
QLDRGDISVGTVRGESIRLSTGCGHVRVDELEGNVDVTATADVYARLING
AKVRIDTLGDGDASVTVGALYSSSAHITSAGNVSVSSCHGRIAIDTADTL
GGVNLSSVNGTAQVSTGECGAKVHMDVLEEGTACDIRSDGGDVNVSMSQQ
VDADLDIKANSVELPSSFEGDALRGKAVGSIRSAAVGPSRAARYGSASSN
SKDAGGGKIDLVGARGQSLRQYFPNDAATNTLRPKLSVTAKGGSVVVEIL
SWADNIARKFTTREAAKSGP*
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