prot_C-linearis_contig7.14595.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14595.1
Unique Nameprot_C-linearis_contig7.14595.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1284
Homology
BLAST of mRNA_C-linearis_contig7.14595.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 3.230e-67
Identity = 301/695 (43.31%), Postives = 350/695 (50.36%), Query Frame = 0
Query:  654 RHRTMPRPLYFPAPGTAAAAVAGPGGIPAASVHGHAGFQPHPEAGAGHVMRVGLPPGSVPILSIVSP-MFSPYAVLTTRVPVHGRSANAGAGPXXXXXXXXXLPP-----------------------------------------TSGAPGPPASGAVPLAISVVPPANGATASTSGGPLSAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSLSPPAALASGTTVSSLSLSPVAGASVSESSSGGSIXXXXXXXPRNGPRQGKXXX-------------AAGGAPNPTTXXXXXXXXXXXXXXXXXXXXXXXXXXQAP----------EPRGLKVLAEALGATPDNRLEVMAGAPALEKKRRLEGRFALPRRHHQEAPPPSPDLAGS----GGGSANGLGREEDTSASGVDLGDVRAAAAQPKQRRKTGG---AVIGGIVVEGWGPPRKDTGPILGGWDDCNGAGAAAVVEXXXXXXXXXXXSCTGTMSSVERGSGRGRDRVGGGGTIRGWGGTSPSASSSEEASSAMGVWGVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWPEELKRGVGIVTDLVLPCPGRYDARGAAGAAPGRREGVGVGWAGFAVEE------DDEDEREMAAALEAIYDEGWEQLKRHAEVHGKEERQRATDAWLASRTPQQQSDYRERTQ 1270
            RHRT PRP+Y+PA GT AAAVAGPGG          GFQPHPE+G GHV+ +GLPPG           MFSPYAVLT RVP+HG     G  P    XXXXX                                            T+GAP P  S A   A +  PP N   A+ +    +A G                             SP  SP    A+  T ++   +PVAG S   + SGGS XXXXXXX R+G   G                  +    +P++   XXXXXXXXXXXXXXXXXXXXXXX             +PRGLKV+ + LGATPDNRLEV+  AP+LEKKRR+EGRFA+P++H QEAPPPSPDLAGS             +E+  + +GVDLG  RA   Q +Q  +T      V  G  V+GWGP R+DTGP+ GGW DC     A+ V+ XXXXXXXXXX                            W  T  S S     S   G WG+    XXXXXXXX        XXXX                  W EELK  VG+VTDLVLPC GR              +G GV   G A+EE        EDEREMAAALEAIY++G EQL+RHAEVHGKE RQRATDAWLASRTPQQQ+DYRERTQ
Sbjct:   12 RHRTFPRPVYYPASGTPAAAVAGPGGXXXXXXXXXXGFQPHPESG-GHVLHLGLPPGXXXXXXXXXXXMFSPYAVLT-RVPMHGGRGGNGVVPPANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVGVRTTGAPLPGGSAAA-AAANGAPPGNDGLATAANRSSNASGTPSPG------------------------SPVTSPRCVTAA--TGNTAPCTPVAGPSGRAAVSGGSXXXXXXXX-RSGQAHGSDRSNGKIGXXXXTILFRSHNHVHPSSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTRNKPRGLKVVLQPLGATPDNRLEVLKLAPSLEKKRRMEGRFAVPQQH-QEAPPPSPDLAGSCXXXXXXXXXXXXKEDVEAVTGVDLGCFRAQKRQQRQDEETNRKQEVVAAGAGVDGWGP-RQDTGPVEGGWGDCCIPAVASAVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXWEATESSTS----LSGGAGDWGIASGRXXXXXXXXVCGVSESGXXXXSMAVSTDEQGEEGQEEARWAEELKSSVGVVTDLVLPCQGR--------------DGAGVDGVGIAIEEVGEEGEGHEDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQNDYRERTQ 654          
BLAST of mRNA_C-linearis_contig7.14595.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.620e-43
Identity = 168/345 (48.70%), Postives = 189/345 (54.78%), Query Frame = 0
Query:  944 MAGAPALEKKRRLEGRFALPRRHHQEAPPPSPDLAGSGGGSANGLG----REEDTSASGVDLGDVRAAAAQPKQRRKTGG---AVIGGIVVEGWGPPRKDTGPILGGWDDCNGAGAAAVVEXXXXXXXXXXXSCTGTMSSVERGSGRGRDRVGGGGTIRGWGGTSPSASSSEEASSAMGVWGVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG-----WPEELKRGVGIVTDLVLPCPGRYDARGAAGAAPGRREGVGVGWAGFAVEEDDE------DEREMAAALEAIYDEGWEQLKRHAEVHGKEERQRATDAWLASRTPQQQSDYRERTQ 1270
            MA AP+LEKKRR+EGRFA+ ++H QEAPPPSPDLAGS GG+         +E+  +A+GVDLG  RA   Q +Q  +T      V   + V+GWGP R+DTGP+ GGW DC     A    XXXXXXXXXXX                                                     XXXXXXXXXXXXXXX         XXX           EG     W EELK  VG+VTDLVLPC GR              +G GV   G A+EE  E      DEREMAAALEAIY++G EQLKRHAEVHGKE RQRATDAWLASRTPQQQSDYRERTQ
Sbjct:    1 MALAPSLEKKRRMEGRFAVAQQH-QEAPPPSPDLAGSCGGAXXXXXXXXXKEDVEAATGVDLGCFRAQKQQQRQEVETKRKEEVVAADVAVDGWGP-RQDTGPVEGGWGDCCIPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCGVSESGSXXXSMAVSTDEQGEEGQEEARWAEELKSSVGVVTDLVLPCQGR--------------DGAGVDGVGIAIEEGGEEEXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQSDYRERTQ 315          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4K7_9PHAE3.230e-6743.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG8_ECTSI1.620e-4348.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 488..508
NoneNo IPR availablePANTHERPTHR21704:SF18NIPPED-B-LIKE PROTEINcoord: 388..1245
IPR033031SCC2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 388..1245

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3614169..3620121 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14595.1mRNA_C-linearis_contig7.14595.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3613433..3620834 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14595.1 ID=prot_C-linearis_contig7.14595.1|Name=mRNA_C-linearis_contig7.14595.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1284bp
MVSHEGPHRVPPDTAAACGPEGPLGAEQLLRPWPAPVDSSGVDSSGVDAP
MQLQQERPLEERFRQVNISSSSGSGSIKNSERVGQAPMMAPPPRGVAAHC
MQPGTPQQQQQQQRQRAKVGTTTTPRAFLEQQQQQQQADAATQGYAAATS
SAAAAPAYRVGGAAAIENRWPPLLGVVPCSAAAAAAAAAAAVSRGSAAPP
VTEAAATAANDAAPRAATVAAPPPMAVGPQMRPPALVRRRVPRSSSCDGL
VETVSTTCTGKQVVRAALLASPAGSGSGAGTEQGGRRNGWHDARHSGGGS
SSSSNSATAGAWPGAGKSPQYSPKERILSPSTPRNRPRGGNWDRGGPSTP
PPPPPPPPPPPPPPLQQQQQQQQQQPLTAIPMAVLQQAAPHPHAHLSQRY
PAWDGAIHVPTVSPTRQQQQQQQQQQQMGQRQQHRHHHHQQQQQQQQQHA
SGPYEAVYWRQQPAPGAHPAQHRPLHVILTPAEHQMILQHQREQHQQLQL
QQQQQRNQQRNQQLHLHPREQQHQQQQPRLRDGQQPRPREPLQPREQQQQ
QLGRPRTESARSLQQGQGSAAGGRGRMDPGNEGGGSGGSGGSGGSGGGGG
GGRRPLSPPSAGMRRSQAPGGGGEWSPQQQQQQQQQHHQMNNGTGGGGGG
GGVRHRTMPRPLYFPAPGTAAAAVAGPGGIPAASVHGHAGFQPHPEAGAG
HVMRVGLPPGSVPILSIVSPMFSPYAVLTTRVPVHGRSANAGAGPPPPPP
PPPPLPPTSGAPGPPASGAVPLAISVVPPANGATASTSGGPLSAKGGGGG
VPPGGGSDIGDASSNTRTTTTPPPGSPSLSPPAALASGTTVSSLSLSPVA
GASVSESSSGGSIGSSGGSEPRNGPRQGKGNGAAGGAPNPTTTTTTTVRI
RVHNHPPPPSSLPLKPRPQAPEPRGLKVLAEALGATPDNRLEVMAGAPAL
EKKRRLEGRFALPRRHHQEAPPPSPDLAGSGGGSANGLGREEDTSASGVD
LGDVRAAAAQPKQRRKTGGAVIGGIVVEGWGPPRKDTGPILGGWDDCNGA
GAAAVVEKEEGASSSGSGSCTGTMSSVERGSGRGRDRVGGGGTIRGWGGT
SPSASSSEEASSAMGVWGVTGGNGGGSASGGRARGSGSSSGSSGSNGGGG
GGISAEEEEEGWPEELKRGVGIVTDLVLPCPGRYDARGAAGAAPGRREGV
GVGWAGFAVEEDDEDEREMAAALEAIYDEGWEQLKRHAEVHGKEERQRAT
DAWLASRTPQQQSDYRERTQPQPQPQPQPQPQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033031SCC2/Nipped-B