prot_C-linearis_contig7.14550.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14550.1
Unique Nameprot_C-linearis_contig7.14550.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1067
Homology
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BLAST of mRNA_C-linearis_contig7.14550.1 vs. uniprot
Match: A0A6H5KU59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU59_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.890e-13
Identity = 136/360 (37.78%), Postives = 159/360 (44.17%), Query Frame = 0 
Query:  242 SFATPVNYGEFPQPFSGLDVPVVPYERTKSRSSNGXXXXXXXXXXXXXXXXXXXXXXXGGEGAFLSA---------GGQSGTEDWMAPPEIDVTDLVMDNNEFYTPHGHGGSDSGGGTGRNDRKIKRA---------NISDNEALREAVVMVAVASAEAKALRRNSSHGTASNVGVRSFDSLGWLGSDA----DFTARSNGGSQISAGTRSSAENTDNGPPSASEDMSLAAAAVEAXXXXXXXX-------ATELSTESDPGAWDTGFSTDQGESAAEGVVDSSKGLGPGPAR--RSGGNSAAFGSERSGRGXXXGAVPPTPRSLPGLLSMSFSTSMM-DEGFGH-QP-LSPSSAFVRSQ 567
            + A P NY  FPQPFSGLDVPV PY R+ SRSS  XXXXXXXXX                +G F+S          GG  G E+    PEIDV DLVMDNNEFYTPHG  G                           IS N+ALR+AV                                 G   SD+     F   ++ GS    G  S A+  DNG PS         AA +AXXXXXXXX       +  L  +  P     G  T  G+ +  GV  SS G  P   R  R+ G   + GS+ +        +PPTPRSLPGLLSMSF  +MM +EG    QP LSP S   RSQ
Sbjct:   91 ALAGPENYEHFPQPFSGLDVPVRPYARSASRSSXXXXXXXXXXXFGDTEAGGGLERQD--DGGFVSXXXXXXGEELGG--GREEGWVRPEIDVADLVMDNNEFYTPHGKSGXXXXXXXXXXXXXXXXXXXXXXXXXHTISTNKALRDAVXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXNGSNRSDSCRRPRFDTAADEGSVARGGLNSVADVDDNGHPSLPRKDGKLEAAAKAXXXXXXXXXXXXXGLSAGLFRDETPPLPPGGGVTTPGKDST-GVWRSSAGNNPTNVRDNRAAGGGLSAGSQAAAAPVASTPLPPTPRSLPGLLSMSFDNNMMVEEGLRQSQPRLSPPSVLRRSQ 442
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BLAST of mRNA_C-linearis_contig7.14550.1 vs. uniprot
Match: D7G1W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.550e-10
Identity = 54/127 (42.52%), Postives = 65/127 (51.18%), Query Frame = 0 
Query:  929 QAQKIDSGRLTDTVRWHGGDRGGGGXDAGNTGDDKPSD-ADFNTGPFFLCGGDADGASQVTVPREARIAESGVAAAGGVTKVVCXXXXXXXXSASTGLFDSTKRWFDSVGTVIVGEFSSQSGGQNNV 1054
            QA   D+GRLTDTV W G  +  GG   G +G  +  D A+F+T PFF CG   DG +  TV R       G  A GG               A TGLFDSTK+WFDSVG  +V     ++GGQ  V
Sbjct:  632 QADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRANFDTAPFFACG---DGKASTTVSRP-----GGAGARGGAGMT----------GAPTGLFDSTKKWFDSVGKCVV-----EAGGQREV 735
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14550.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU59_9PHAE1.890e-1337.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1W4_ECTSI5.550e-1042.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 67..1066
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..66
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..43
NoneNo IPR availableTMHMMTMhelixcoord: 45..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3111839..3116680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14550.1mRNA_C-linearis_contig7.14550.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3107885..3118884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14550.1 ID=prot_C-linearis_contig7.14550.1|Name=mRNA_C-linearis_contig7.14550.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1067bp
MASTPAPQAAVEGGAEEGVLSPSSAAVGDVDGGGGGGGGDKDRWAVALVL
GVFVGIFVLGACWCWCSHLGRKKRNSSNTRRGSKGSSKESSKGASKDSAI
DAAAPPAPAISAVGVDANVDEEAATVSVMVAEVTSGVAAAGMTATSVPPS
GHDGALPRPSSSAAESATYRGNTAPGSNKSVEDASLPASARAPSTYSSSS
FSSLNSAAVSTSLDVTAAVDGGGVGAGGGALVTLTTTNGVSSFATPVNYG
EFPQPFSGLDVPVVPYERTKSRSSNGGFAAASDDDDGGGGGGCGGEQQEG
GEGAFLSAGGQSGTEDWMAPPEIDVTDLVMDNNEFYTPHGHGGSDSGGGT
GRNDRKIKRANISDNEALREAVVMVAVASAEAKALRRNSSHGTASNVGVR
SFDSLGWLGSDADFTARSNGGSQISAGTRSSAENTDNGPPSASEDMSLAA
AAVEAAAVAAAQAATELSTESDPGAWDTGFSTDQGESAAEGVVDSSKGLG
PGPARRSGGNSAAFGSERSGRGGGGGAVPPTPRSLPGLLSMSFSTSMMDE
GFGHQPLSPSSAFVRSQTRDSDSDNDNDSYNNHVDGSNQTSRQPPTQAAD
DDSERMPPPPPPSDANGRKQLLLQKPFCRSSSRYSSDFEDGGGMMLPPLP
EVGDCGAIGGGRGNGGEGGGGSVRYPFVSNASTGVGGRGSYGGDTGPALS
RIPSSQSIPDSIDDEANALAGRGGGDKPDWVVEMAYGGRGKSFGANDDDD
YGGGRSGCSAGGGTGRGSSTLGGEGSLGVSVEEDDDDVEKGGAPRRRSCG
TPSSSLTHDAVRRTSAAAMPWVFNGRTLRKIKSIDEGSDEQECFRSSASG
LFPPLSSSISSTAWFFRSNGGGGDSGGGTGVASGVFNSCVGLTSPATPDA
APAVAGAAAIEGGAGAGGGGDGARKTLQQAQKIDSGRLTDTVRWHGGDRG
GGGGDAGNTGDDKPSDADFNTGPFFLCGGDADGASQVTVPREARIAESGV
AAAGGVTKVVCGGDGGGGGSASTGLFDSTKRWFDSVGTVIVGEFSSQSGG
QNNVSVVSPSSLNKTE*
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