prot_C-linearis_contig7.14539.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14539.1
Unique Nameprot_C-linearis_contig7.14539.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length174
Homology
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.590e-17
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    8 DVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQASTHNIPGGTVSAGISLQLIYLYHYGMWAVFYPLCAELAFILYLAGLKSYYE 95
            +++GF  GV++A +LLPQI+ AH R+S  D+S+ WQA          + G+   +IY +H+ +WAVFYP+  E + ++YL GLK YYE
Sbjct:    9 NIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQA--------VYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYE 88          
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Match: D7G1V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.900e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 MGV-ETFIDVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQ 43
            MGV +T +D +GFSAG LVA+SLLPQIWRAH+R SA DLSF WQ
Sbjct:    1 MGVTDTIVDAIGFSAGFLVASSLLPQIWRAHKRRSAADLSFTWQ 44          
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Match: D7G1V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V2_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 8.400e-8
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 0
Query:    4 ETFIDVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQASTHNIPGGTVSAGISLQLIYLYHYGMWAVFYPLCAELAFILYLAGLKSYYE 95
            +T  DV+GF  G ++AASL+PQ++R   R+ A D+S  +Q             GI + L++  +Y +W +F+P  A +   +YLA LK   E
Sbjct:    3 DTVYDVMGFLGGCVMAASLVPQVYRVTVRKKAADISHTYQV--------VFVTGIVMFLVFYGYYELWELFFPALASMMLQIYLAVLKIRLE 86          
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Match: A0A662XQM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQM1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.420e-5
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0
Query:    8 DVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQASTHNIPGGTVSAGISLQLIYLYHYGMWAVFYPLCAELAFILYLAGLKSYYE 95
             +LG    +L+AASL+PQ+W+ +  +SA+D+S  +Q         T   G+S+ + Y +   +W ++ P   EL   L L  +K YY+
Sbjct:   11 QILGLLGSLLLAASLVPQMWKVYRTKSAKDISLTFQL--------TYLLGLSMIVAYGFGRWLWPIYIPATIELCAALTLFSMKLYYD 90          
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Match: A0A662YHH4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHH4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.530e-5
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0
Query:    8 DVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQASTHNIPGGTVSAGISLQLIYLYHYGMWAVFYPLCAELAFILYLAGLKSYYE 95
             +LG    +L+AASL+PQ+W+ +  +SA+D+S  +Q         T   G+S+ + Y +   +W ++ P   EL   L L  +K YY+
Sbjct:  300 QILGLLGSLLLAASLVPQMWKVYRTKSAKDISLTFQL--------TYLLGLSMIVAYGFGRWLWPIYIPATIELCAALTLFSMKLYYD 379          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCW9_ECTSI6.590e-1743.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1V4_ECTSI8.900e-1272.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1V2_ECTSI8.400e-834.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662XQM1_9STRA3.420e-531.82Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662YHH4_9STRA4.530e-531.82Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006603PQ-loop repeatPFAMPF04193PQ-loopcoord: 7..42
e-value: 2.5E-5
score: 24.0
NoneNo IPR availableGENE3D1.20.1280.290coord: 4..98
e-value: 1.5E-7
score: 33.3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..94
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3000444..3005230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14539.1mRNA_C-linearis_contig7.14539.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 3000444..3007729 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14539.1 ID=prot_C-linearis_contig7.14539.1|Name=mRNA_C-linearis_contig7.14539.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
MGVETFIDVLGFSAGVLVAASLLPQIWRAHERESAEDLSFFWQASTHNIP
GGTVSAGISLQLIYLYHYGMWAVFYPLCAELAFILYLAGLKSYYEHHLLG
LGRGGGDRPFVKKPAGLSSNDDYTVIGGGPGGSGEGTSLDSSGVGGGSGR
WAAVAGGEDSGEDTATSDSTGQG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006603PQ-loop_rpt