prot_C-linearis_contig7.14504.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14504.1
Unique Nameprot_C-linearis_contig7.14504.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length75
Homology
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BLAST of mRNA_C-linearis_contig7.14504.1 vs. uniprot
Match: D7G142_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G142_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.280e-13
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 0 
Query:    1 MVAQPNEGFRFQLVTTEAKMLGRVGSSSVSRDAEKNISNFYRYRRWNEVKQSECSLPRHRPATDR-QACGGCTMA 74
            MVAQPNEGFRFQL TTE K+ G   SSSVSRDA+ +  NFYR   WNEVKQ    +P H  AT+  Q+C GCTMA
Sbjct:  212 MVAQPNEGFRFQLATTEVKIFG---SSSVSRDAD-STWNFYR---WNEVKQG---VPYH--ATEPPQSCCGCTMA 274
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14504.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G142_ECTSI3.280e-1362.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2675343..2680829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14504.1mRNA_C-linearis_contig7.14504.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 2673482..2681756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14504.1 ID=prot_C-linearis_contig7.14504.1|Name=mRNA_C-linearis_contig7.14504.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
MVAQPNEGFRFQLVTTEAKMLGRVGSSSVSRDAEKNISNFYRYRRWNEVK
QSECSLPRHRPATDRQACGGCTMA*
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