prot_C-linearis_contig112.1520.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1520.1
Unique Nameprot_C-linearis_contig112.1520.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length240
Homology
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: D8LNJ2_ECTSI (Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 5.400e-127
Identity = 202/242 (83.47%), Postives = 213/242 (88.02%), Query Frame = 0
Query:    1 MRLSASIAMGVGCVSVVQVSSFAFVQVPLGA-PAGCTSCVGSSYQQV-GFRSSLRARPRRLSVAMSAGADGEGGDGMGDD-ADDDMSSAVATKPKKKFNSELDDLVGEMAGRTSDEPVIIPRGAGIAPMAPGPIKADPIPGMDDDDIPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLLPLDYDTYFQ 239
            MRLSAS+A+GVGCVSVVQVSSFAFV  PLGA P+GCTSC   S Q   G  SS R RP RL VA+SA ADGEGG   G++ ADDD SSAVATKPK+K N ELDDLV EMAGR+ DEP++IPRGAGIAPMAPGPIK DPIPGMDDDDIPGKIVL PEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTE WTGQSIPQQ+ETFAQLLGLLPLDYDTYFQ
Sbjct:    1 MRLSASVALGVGCVSVVQVSSFAFV--PLGATPSGCTSCTAHSSQATSGSGSSSRVRPGRLLVALSA-ADGEGGSDSGEETADDDTSSAVATKPKRKVNPELDDLVSEMAGRSDDEPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ 239          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A0A836CEG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.390e-32
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 0
Query:  119 RGAGIAPMA---PGPIKADPIPG---MDDDDIPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLLPLDYDTYF 238
            R + +AP A    GP  AD +     + DD++PGKIV+    LA+QQ  LEK A+QLRR+RLD+EAE+A   G+ P AE+ NGR+AMF I VG+LTE WTGQS+PQQVET A ++GLLPLDY++ F
Sbjct:   42 RWSAVAPEAGADAGPDTADEVEDEGIIADDNVPGKIVVDDATLAQQQIDLEKYARQLRRQRLDREAEEARLLGWTPAAEINNGRAAMFFIVVGILTEYWTGQSMPQQVETMASVMGLLPLDYESMF 167          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A0A7V5I693_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I693_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 8.210e-18
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  144 IPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            +PG+  LS   LAEQ++ L  +A++ +  RL KEAE    FGFC  AE+ NGR+AMF    GMLTE WTGQ++PQQ+E   ++LG++
Sbjct:   56 VPGRYKLSAVELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 142          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: K0TDY7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TDY7_THAOC)

HSP 1 Score: 86.3 bits (212), Expect = 2.890e-17
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 0
Query:   86 AVATKPKKK-FNSELDDLVGEMAGRTSDEPVIIPRGAGIAPMAPGPIKADPIPGMDDD----DIPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLLPLDY 234
            A A  P  + + S +   + E A   SDEP++ P    + P   G    D     DDD    ++PGKIV++   LA Q   L K+  + R+ R D+E EDA   GF P+AE++NGR+AMF + VG+LTE W+G SI  Q+E  A++ G +  D+
Sbjct:   29 ARAVSPSTRIYESTVPANLAEQAKEISDEPLMNPDNPNL-PALKGDYDWDAEYAADDDWITENVPGKIVVNEVDLAAQVTELTKLEDKYRKIREDQEYEDARIIGFVPKAEMYNGRAAMFFLVVGLLTEYWSGISITGQIEEMARVGGFIGPDF 181          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A9BKE1_HEMAN (Hlip n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BKE1_HEMAN)

HSP 1 Score: 84.3 bits (207), Expect = 4.570e-17
Identity = 41/87 (47.13%), Postives = 63/87 (72.41%), Query Frame = 0
Query:  144 IPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            IPGKI+LS  V++E++  L+ ++++ ++ER+ KE  D   FGF   +E+ NGR AMF I  G+LTE+WTGQ+IP Q+ET  + LG++
Sbjct:   45 IPGKIILSKTVISERELKLKSLSEKWKKERIAKENFDKKAFGFTKNSEILNGRIAMFFIITGLLTEIWTGQTIPDQIETIIRTLGII 131          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: M1V653_CYAM1 (Similar to high light inducible protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V653_CYAM1)

HSP 1 Score: 86.3 bits (212), Expect = 5.000e-17
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  144 IPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            +PG+  LS   LAEQ++ L  +A++ +  RL KEAE    FGFC  AE+ NGR+AMF    GMLTE WTGQ++PQQ+E   ++LG++
Sbjct:  119 VPGRYKLSAIELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 205          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: Q98RP5_GUITH (High light inducible protein n=1 Tax=Guillardia theta TaxID=55529 RepID=Q98RP5_GUITH)

HSP 1 Score: 84.0 bits (206), Expect = 5.780e-17
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 0
Query:  140 DDDDIPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            DD++IPGKIVLS E ++ ++K L+ +A++ + ERL+KE  +   FGF   +E+ NGR AMF IT G+LTELWT QS+  Q+E   ++LG++
Sbjct:   36 DDNNIPGKIVLSKEEISNREKKLKILAEKWKNERLEKEILENKIFGFSKYSEIINGRIAMFFITTGLLTELWTKQSLISQIEIMLRVLGII 126          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A0A7J7IMA7_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA7_9RHOD)

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-16
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0
Query:  145 PGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            PG+  LS   LAEQ++ +  +A++ + ER+ +EAE    FGFC  AE+ NGR+AMF    GMLTE WTGQ++PQQ+E   ++LG L
Sbjct:  137 PGRYKLSAAELAEQRRAIRAVAERYKAERIAREAEARRVFGFCRNAEIINGRTAMFFFATGMLTEYWTGQTMPQQIELLLRILGFL 222          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A0A5J4YWB8_PORPP (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWB8_PORPP)

HSP 1 Score: 80.9 bits (198), Expect = 2.130e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
Query:  145 PGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLL 230
            PG   L+P  LAEQ+K L  ++++ + ER+D+E E +  FG   RAE+ NGR AMF +  G+LTE WTG++IP+QVET  + LGL+
Sbjct:   79 PGMRELTPAELAEQKKVLVALSEEWKAERMDREFEQSRLFGLTRRAEILNGRVAMFFLATGLLTEYWTGENIPEQVETLFRTLGLI 164          
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Match: A0A7S2P2S9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P2S9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.440e-15
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 0
Query:  140 DDDD-----IPGKIVLSPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTELWTGQSIPQQVETFAQLLGLLPLD 233
            DD+D     +PGK+V++   LA+Q   L ++ ++ R+ER+ KE ED    G+ P+AE++NGR AMF + VG+LTE WTG +IP Q+E   ++ G + +D
Sbjct:   57 DDEDWITENVPGKVVMNEIDLAKQVSALNQLEEKWRKERVYKEYEDKALLGWTPQAEMYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIDVD 155          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ2_ECTSI5.400e-12783.47Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_EC... [more]
A0A836CEG8_9STRA6.390e-3255.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5I693_9BACT8.210e-1849.43Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
K0TDY7_THAOC2.890e-1738.31Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A9BKE1_HEMAN4.570e-1747.13Hlip n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
M1V653_CYAM15.000e-1749.43Similar to high light inducible protein n=1 Tax=Cy... [more]
Q98RP5_GUITH5.780e-1748.35High light inducible protein n=1 Tax=Guillardia th... [more]
A0A7J7IMA7_9RHOD1.900e-1648.84Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A5J4YWB8_PORPP2.130e-1548.84Light-harvesting complex-like protein OHP2, chloro... [more]
A0A7S2P2S9_9STRA3.440e-1542.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..179
NoneNo IPR availablePANTHERPTHR33401:SF1LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 125..221
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 179..220
IPR037492Light-harvesting complex-like protein OHP2PANTHERPTHR33401FAMILY NOT NAMEDcoord: 125..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:171831..175642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1520.1mRNA_C-linearis_contig112.1520.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 171831..176710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1520.1 ID=prot_C-linearis_contig112.1520.1|Name=mRNA_C-linearis_contig112.1520.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
MRLSASIAMGVGCVSVVQVSSFAFVQVPLGAPAGCTSCVGSSYQQVGFRS
SLRARPRRLSVAMSAGADGEGGDGMGDDADDDMSSAVATKPKKKFNSELD
DLVGEMAGRTSDEPVIIPRGAGIAPMAPGPIKADPIPGMDDDDIPGKIVL
SPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMF
GITVGMLTELWTGQSIPQQVETFAQLLGLLPLDYDTYFQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037492OHP2