prot_C-linearis_contig112.1518.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1518.1
Unique Nameprot_C-linearis_contig112.1518.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length542
Homology
BLAST of mRNA_C-linearis_contig112.1518.1 vs. uniprot
Match: A0A6H5JIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY6_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 4.980e-100
Identity = 307/571 (53.77%), Postives = 341/571 (59.72%), Query Frame = 0
Query:    1 MPIIERAMPIPRSYVPETSSPSRSCSRSPR---RVPSPLRNAQFRPLAMEYALDPQPTSCEYFNNGDEEEEPTQSEYCALVRTVGYSKVGDKSFMSGKCPHCHRRVKSEKQICTPNATPPPSPWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRXXXXXXXXFKGSFFGGGSNDDDVVDKKKA------------VAGAVGPAXXXXXXXXRGLTRSPPRG-DAPDSPGPWARSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVRVGSSSPSR-------GAFFGSSAAADSSDASTSTNTKPWASPSRRNAAVLAARSDYSARSPRAAERGRSPTARG-----PERSSYLGGGGCGSPARSPATPRSLSPASGRSPGGGVRTTRHSPGGSRPTRGPRSPGPRSPVRSPWQGASFFGSSHXXXXXXXXXXEVMEESVFSASSGNSGXXXXXXXXXGSSRYPIAARSAKSRGAHSPGPSRPRSPLRVKVDFFDEQXXXXXXXXXXXXXXXXXXXXQSKPAKGGGGWKSPLRSPFKGLFFGGGNSPKKDAVSCGV--GTE 541
            MP++ERAMP+P+ ++ E SSPSR+  RSPR   RVPSPLRNA+FRPLAMEYA  PQPTSC+YFN  D++EE TQSE+CA VRTVGYS VG K FMSGKCPHCHR VKS+ Q+CTPNATPP SPWK                          XXXX  XXXXXXX FKGSFFG  SN+DD    K A             A  +GPA         GLTRSPPRG +A   P PWARSRSP      XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   GAFF     A ++D  TS N    AS S      +AAR           ERGRSP+ RG      E   + GG G GS                RSPG GV   R+SPGG   TRGPRSPGPRSP+RSPW+GASFFG  +          E ME S +S SS +S                    +AKSRGAHSPGP+ PRSPLRVKVDF D+Q  XXXXXXXXXXXXXXXXX Q+K     GGWKSPLRSPFKGLFFGG +SPKKD  + GV  GTE
Sbjct:    1 MPVMERAMPLPKLHLREGSSPSRAGDRSPRSQRRVPSPLRNAKFRPLAMEYAEVPQPTSCKYFNGVDDDEEVTQSEFCAHVRTVGYSTVGGKPFMSGKCPHCHRYVKSDNQVCTPNATPPQSPWKKTLNNLQSPLRSPLRTGSSPKDGSGSXXXXXXXXXXXXX-FKGSFFG--SNEDDDKKGKAAPTSPKKTXXXAPTAAPIGPAPAPRGV---GLTRSPPRGGEAGSQPAPWARSRSPPPRVNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAFF-----AVAND--TSNNGGRSASGS------VAAR-----------ERGRSPSTRGGRGREEECVPFRGGVGGGSXXXXXXXXXXXXA---RSPGVGV--ARYSPGGGGMTRGPRSPGPRSPLRSPWKGASFFGGGNEDE-------EGMEPSAYSGSSSSSTYV-----------------AAKSRGAHSPGPNGPRSPLRVKVDFVDQQEAXXXXXXXXXXXXXXXXXKQAK-----GGWKSPLRSPFKGLFFGGSSSPKKDTQAGGVTIGTE 507          
BLAST of mRNA_C-linearis_contig112.1518.1 vs. uniprot
Match: D7FQS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS9_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 4.290e-61
Identity = 141/237 (59.49%), Postives = 155/237 (65.40%), Query Frame = 0
Query:    1 MPIIERAMPIPRSYVPETSSPSRSCSRSPR---RVPSPLRNAQFRPLAMEYALDPQPTSCEYFNNGDEEEEPTQSEYCALVRTVGYSKVGDKSFMSGKCPHCHRRVKSEKQICTPNATPPPSPWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRXXXXXXXXFKGSFFGGGSNDDDVVDKKKA---------VAGAVGPAXXXXXXXXRGLTRSPPRGDAPDS-PGPWARSRSP 224
            MP++ERAMP+P+ ++ E SSPSR+  RSPR   RVPSPLRNAQFRPLAMEYA  PQP+SC+YFN  D++EE TQSE+CA VRTVGYS VG K FMSGKCPHCHR VKS+ Q+CTPNATPP SPWK                          XXXX  XXXXXXX FKGSFFG  SNDDD    K A          A AVGPA         GLTRSPPRG    S P PWARSRSP
Sbjct:   50 MPVMERAMPLPKLHLREGSSPSRAGGRSPRSQRRVPSPLRNAQFRPLAMEYAEVPQPSSCKYFNGADDDEEVTQSEFCAHVRTVGYSTVGGKPFMSGKCPHCHRYVKSDNQVCTPNATPPQSPWKKTLNNLQSPLRSPLRTGSSPKDGGGSXXXXXXXXXXXXX-FKGSFFG--SNDDDDQRGKAAPTSPKRTAPTAAAVGPAPAPRGV---GLTRSPPRGGETGSQPAPWARSRSP 280          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIY6_9PHAE4.980e-10053.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQS9_ECTSI4.290e-6159.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 478..501

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:160215..163102 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1518.1mRNA_C-linearis_contig112.1518.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 160087..163483 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1518.1 ID=prot_C-linearis_contig112.1518.1|Name=mRNA_C-linearis_contig112.1518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=542bp
MPIIERAMPIPRSYVPETSSPSRSCSRSPRRVPSPLRNAQFRPLAMEYAL
DPQPTSCEYFNNGDEEEEPTQSEYCALVRTVGYSKVGDKSFMSGKCPHCH
RRVKSEKQICTPNATPPPSPWKNTLNNLQSPLRSPLRSRSRSPKNGDGGG
DGTRLQSPLRSPFKGSFFGGGSNDDDVVDKKKAVAGAVGPAPAPAPAPAR
GLTRSPPRGDAPDSPGPWARSRSPGPRADSAGPRASSPAPRAPRANSPGP
RANSPGPRSPVRVGSSSPSRGAFFGSSAAADSSDASTSTNTKPWASPSRR
NAAVLAARSDYSARSPRAAERGRSPTARGPERSSYLGGGGCGSPARSPAT
PRSLSPASGRSPGGGVRTTRHSPGGSRPTRGPRSPGPRSPVRSPWQGASF
FGSSHNNNGGDGEEEEVMEESVFSASSGNSGSGSGISGSGGSSRYPIAAR
SAKSRGAHSPGPSRPRSPLRVKVDFFDEQQKAEEEEQAERLAAAAEAALQ
SKPAKGGGGWKSPLRSPFKGLFFGGGNSPKKDAVSCGVGTE*
back to top