prot_C-linearis_contig112.1509.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig112.1509.1
Unique Nameprot_C-linearis_contig112.1509.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length219
Homology
[Close]
BLAST of mRNA_C-linearis_contig112.1509.1 vs. uniprot
Match: D8LNJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ6_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 7.030e-131
Identity = 186/218 (85.32%), Postives = 197/218 (90.37%), Query Frame = 0 
Query:    1 MEGTATESFARRHQMLSLFFWVTLLFSILFAMAAMDVTGQCYVDPCSSASPAVTSGMSFVAAWSAFLFIAQPCYGLYLLRIQCSELVSGIFIGSSGLATAGALTQAVQWGSETAMANAIADEAGTSINSSGTMSFKALAILAWVIFVLQLFTTYWCCKSRDVLLEVSWAAGHDYTQLPTRAGLDGSSNKFSSYQQAMDDEDLEAAANGDPGASLAHYL 218
            M GT TESF RRHQMLSL FWVTLLFSILFAMAAMDVTGQCYVDPCS++SPAVTSGMS V A SAFLFIAQPCYGLYLLRIQCSELVSGIFIG S   T GAL Q VQWGSET++A AIADEA T +NSSG MSFKALAILAW++F +QLFTTYWCCK+RDVLLEVSW+AGHDYTQLPTRAGL G+ NKFSSYQQAMDDEDLEAAANGDPGASLAHYL
Sbjct:    1 MAGTGTESFVRRHQMLSLSFWVTLLFSILFAMAAMDVTGQCYVDPCSTSSPAVTSGMSLVTAMSAFLFIAQPCYGLYLLRIQCSELVSGIFIGCSTFTTLGALGQGVQWGSETSLATAIADEADTDVNSSGVMSFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSAGHDYTQLPTRAGLHGNGNKFSSYQQAMDDEDLEAAANGDPGASLAHYL 218
[Close]
BLAST of mRNA_C-linearis_contig112.1509.1 vs. uniprot
Match: A0A6H5KYA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA0_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.390e-85
Identity = 124/150 (82.67%), Postives = 133/150 (88.67%), Query Frame = 0 
Query:   69 IAQPCYGLYLLRIQCSELVSGIFIGSSGLATAGALTQAVQWGSETAMANAIADEAGTSINSSGTMSFKALAILAWVIFVLQLFTTYWCCKSRDVLLEVSWAAGHDYTQLPTRAGLDGSSNKFSSYQQAMDDEDLEAAANGDPGASLAHYL 218
            I  PCYGLYLLRIQCSELVSGIFIG S   T GA  Q VQWGSETA+A AIADEA T +NSSG +SFKALAILAW++F +QLFTTYWCCK+RDVLLEVSW+AGHDYTQLPTRAGL G+ NKFSSYQQAMDDEDLEAAANGDPGASLAHYL
Sbjct:    8 IVVPCYGLYLLRIQCSELVSGIFIGCSTFTTLGAFAQGVQWGSETALATAIADEADTDVNSSGVISFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSAGHDYTQLPTRAGLHGNGNKFSSYQQAMDDEDLEAAANGDPGASLAHYL 157
[Close]
BLAST of mRNA_C-linearis_contig112.1509.1 vs. uniprot
Match: A0A6H5KXA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXA2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 8.760e-30
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0 
Query:    1 MEGTATESFARRHQMLSLFFWVTLLFSILFAMAAMDVTGQCYVDPCSSASPAVTSGMSFVAAWSAFLFIAQ 71
            M G  TESF R+HQMLSL FWVTLLFSILFAMAAMDVTGQCYVDPCS+ SPAVT GMS V A +AFLFIAQ
Sbjct:    1 MAGAGTESFVRKHQMLSLSFWVTLLFSILFAMAAMDVTGQCYVDPCSTISPAVTGGMSLVTAIAAFLFIAQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNJ6_ECTSI7.030e-13185.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA0_9PHAE2.390e-8582.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXA2_9PHAE8.760e-3081.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..218
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..17
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..33
score: 0.556
NoneNo IPR availableTMHMMTMhelixcoord: 138..157
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 57..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:57842..69061 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1509.1mRNA_C-linearis_contig112.1509.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig112 56914..69413 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig112.1509.1 ID=prot_C-linearis_contig112.1509.1|Name=mRNA_C-linearis_contig112.1509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=219bp
MEGTATESFARRHQMLSLFFWVTLLFSILFAMAAMDVTGQCYVDPCSSAS
PAVTSGMSFVAAWSAFLFIAQPCYGLYLLRIQCSELVSGIFIGSSGLATA
GALTQAVQWGSETAMANAIADEAGTSINSSGTMSFKALAILAWVIFVLQL
FTTYWCCKSRDVLLEVSWAAGHDYTQLPTRAGLDGSSNKFSSYQQAMDDE
DLEAAANGDPGASLAHYL*
back to top