prot_C-linearis_contig11.1341.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1341.1
Unique Nameprot_C-linearis_contig11.1341.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length622
Homology
BLAST of mRNA_C-linearis_contig11.1341.1 vs. uniprot
Match: A0A6H5KUN9_9PHAE (SAGA-associated factor 11 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN9_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 7.070e-99
Identity = 221/308 (71.75%), Postives = 233/308 (75.65%), Query Frame = 0
Query:   83 GDHVKQELVPAPSLKRSREVKDWLLHPPDGSDPIDLRREAEAICSAFELSLCRDVVFE--LHREVHTGVLTNERLWAERLNPPPKSVPGGDVYGRIPPREPSTSITCPSCNRSVGAARYAPHLDKCALGSSRGRASRSARSSQPAPEPYR----------------SXXXXXXXXXXXXXXXXXXXXXXXXPKPPKLFPSPKPPKASAAAAVARPPXXXXXXXXXSLLSRAPLAPRPTXXXXXXAVHSALVDHGREPLHILIKLVDGGPVQTYHRVVLSTPRAEKPQSQQPRSPSTRSLGSDDRPGGP 372
            G   + +++P PSLKR REV+DWL+HPPDGSDPIDLR+EAEAI SAFELSLCRDVVFE  LHRE+HTGVLT ERLWAE  NPPPKSV GGDVYGRIPPREPSTSITCPSCNR+VGAARYAPHLDKCALGSSRGRASRSARSSQP  EP +                 XXXXXXXXXXXXXXXXXXXXXXXXPKPPKL            A  +         XXX             XXXXXXAVH ALVD GREPLHIL+KLVDG PVQTYHRVVLSTPR EKPQ QQPRSPSTRSLGSD RPGGP
Sbjct:   67 GAMTEGQMLP-PSLKRPREVEDWLVHPPDGSDPIDLRQEAEAIYSAFELSLCRDVVFEASLHRELHTGVLTKERLWAESNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSSQPQQEPSKYADSSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKPPKLAXXXXXXXXXXXARPSANSRPTSKPXXXXXXXXXXXXXXXXXXXXXXAVHPALVDTGREPLHILVKLVDGAPVQTYHRVVLSTPRVEKPQPQQPRSPSTRSLGSDHRPGGP 373          
BLAST of mRNA_C-linearis_contig11.1341.1 vs. uniprot
Match: D7FXW5_ECTSI (SAGA-associated factor 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW5_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 3.110e-58
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0
Query:  114 DPIDLRREAEAICSAFELSLCRDVVFELHREVHTGVLTNERLWAERLNPPPKSVPGGDVYGRIPPREPSTSITCPSCNRSVGAARYAPHLDKCALGSSRGRASRSARSS 222
            DPIDLR+EA+ I SAFELSLCRDVVFELHRE+HTGVLT ERLWAE  NPPPKSV GGDVYGRIPPREPSTSITCPSCNR+VGAARYAPHLDKCALGSSRGRASRSARSS
Sbjct:   18 DPIDLRQEADTIYSAFELSLCRDVVFELHRELHTGVLTKERLWAEHNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSS 126          
BLAST of mRNA_C-linearis_contig11.1341.1 vs. uniprot
Match: A0A7S2WKT2_9STRA (SAGA-associated factor 11 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKT2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.260e-7
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0
Query:  171 DVYGRIPPREPSTSITCPSCNRSVGAARYAPHLDKC-ALGSSRGRASRSARSS 222
            D++GRIP +EP T++ C  C ++V A R+APHLDKC  LG+SR  +S S RS+
Sbjct:  125 DIWGRIPSKEPKTTVKCKKCGKNVSAIRFAPHLDKCMGLGTSRRNSSSSVRSA 177          
BLAST of mRNA_C-linearis_contig11.1341.1 vs. uniprot
Match: A0A1B0GPW0_PHLPP (SAGA-associated factor 11 homolog n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0GPW0_PHLPP)

HSP 1 Score: 54.7 bits (130), Expect = 5.780e-5
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 0
Query:  121 EAEAICSAFELSLCRD----VVFELHREVHTGVLTNERLWAERLNPPPK-SVPGGDVYGRIPPREPSTSITCPSCNRSVGAARYAPHLDKC 206
            E E IC+    SL  D    VV E+H +  TG+        E   P     +P  DV+G    ++ +   TCP+C+RSV A+R+APHL+KC
Sbjct:   29 EKETICNYLFNSLVEDAILGVVLEVHCDARTGISAAIEGQPEDTKPFALIDLPDIDVFGAANAKK-AIDCTCPNCDRSVAASRFAPHLEKC 118          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUN9_9PHAE7.070e-9971.75SAGA-associated factor 11 (Fragment) n=1 Tax=Ectoc... [more]
D7FXW5_ECTSI3.110e-5890.83SAGA-associated factor 11 n=1 Tax=Ectocarpus silic... [more]
A0A7S2WKT2_9STRA3.260e-752.83SAGA-associated factor 11 n=1 Tax=Eucampia antarct... [more]
A0A1B0GPW0_PHLPP5.780e-537.36SAGA-associated factor 11 homolog n=1 Tax=Phleboto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 247..268
score: 55.45
coord: 295..312
score: 42.22
coord: 273..289
score: 34.12
coord: 224..236
score: 29.23
NoneNo IPR availablePANTHERPTHR46367:SF1ATAXIN-7-LIKE PROTEIN 3coord: 133..233
NoneNo IPR availablePANTHERPTHR46367FAMILY NOT NAMEDcoord: 133..233
IPR013246SAGA complex, Sgf11 subunitPFAMPF08209Sgf11coord: 183..206
e-value: 6.2E-10
score: 38.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2896273..2901195 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1341.1mRNA_C-linearis_contig11.1341.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2896273..2901195 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1341.1 ID=prot_C-linearis_contig11.1341.1|Name=mRNA_C-linearis_contig11.1341.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=622bp
LLSSLSSLSSLQLSCFRGSEPERSCPWGGPTTREIVADNTEQMEAEKEEP
EVNPSTVRSVGPGPSTSTNATAVASSQGTGSEGDHVKQELVPAPSLKRSR
EVKDWLLHPPDGSDPIDLRREAEAICSAFELSLCRDVVFELHREVHTGVL
TNERLWAERLNPPPKSVPGGDVYGRIPPREPSTSITCPSCNRSVGAARYA
PHLDKCALGSSRGRASRSARSSQPAPEPYRSDNSSPSSKQSSSSKPSAKL
LPSPKPKPPKLFPSPKPPKASAAAAVARPPPQRPPSKPPSLLSRAPLAPR
PTPPPPPPAVHSALVDHGREPLHILIKLVDGGPVQTYHRVVLSTPRAEKP
QSQQPRSPSTRSLGSDDRPGGPPREPASKAAVGGSGNGNRGSSSSSGGGG
GALGPTANTARSSLSAPGPVPGAAGAAGAGPGAGTVGGNGNGRPKQQQSG
GGSRSSSPSSGFFDNRFVDSRGGGGGGGGGSLSASGGQGGGGGGGRKPLK
RQRSGQGSSVGYGGGSSGVGGVAGGYASSSGDSSSSASPPPSPPPTAKVP
PPMFISAPRSPPPSSQQQKQNANSSSSSSSTANRQNGGSPGGGGGGSKDL
DRRCLGMSVESTDRQILSWHD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013246SAGA_su_Sgf11