prot_C-linearis_contig11.1294.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1294.1
Unique Nameprot_C-linearis_contig11.1294.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length361
Homology
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BLAST of mRNA_C-linearis_contig11.1294.1 vs. uniprot
Match: D8LMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ5_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.700e-89
Identity = 172/339 (50.74%), Postives = 203/339 (59.88%), Query Frame = 0 
Query:    4 KKGENPVLPVLNSPSYMTPS-RRWRAIDPITPMVSGLVQGIRFDGPVDRFRVAPRELCRLASVLGWTAVVIGAGEIAIGAVLFSTWRREGAWWAGLLGVMLGMVATGITADAPVGTPLVAWLVGLSXXXXXXXXXXXXXLDGARWLDTKDVEVCAKSFDAVCQDFDCTCSGSDGSWDMCFSPGNGDCSGVESAPPVLLASSCALLTLCVISALLLAVGTKIKCLGGGVAVREDWAHSNPAKTPNITFSPKP----EEPGVTQHQHEQNEDEGGYQERGQQPLRGSREAGKIIVAEYKEEQKEDGVVMCKEILTAAEPWAVGYVNRLAGGGNKKRRDELN 337
            K+ +  VLPV++SPS + PS R     +P TP  S LVQG R  GPVDR+RVA + LCR+ASV GW AVVIGAGE A+GAV+FS WRREG WWAG+L VMLGM  TGITAD PVGTPLV  LV L              LDGA+WL  KDVE+CA    +VCQ+  CTCS S+  WDMCF P NG C G+E A   LLASS  LL L ++SA+LLA G K+K LGGGV V  + A  NPAKTP    +P       EP       ++                               ++ +      +E LT AEPWAVGYV+RLAGGGNKKRRDELN
Sbjct:   11 KRHQKFVLPVVSSPSNLGPSSRHGLPSEPATPKASVLVQG-RAGGPVDRYRVASKRLCRVASVFGWAAVVIGAGETALGAVVFSKWRREGGWWAGVLAVMLGMAGTGITADTPVGTPLVTRLVFLGVASLITSLVTALALDGAKWLSIKDVEMCASDVRSVCQE--CTCSSSNLLWDMCFPPLNGSCGGIEFAAAPLLASSVVLLALALVSAVLLATGIKVKFLGGGVEVGGEEARPNPAKTPGKRRAPYKCVDGAEPPTPADVLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESDTAPTAKREFLTGAEPWAVGYVDRLAGGGNKKRRDELN 346
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1294.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ5_ECTSI2.700e-8950.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 143..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..113
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 220..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 198..219
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..64
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 198..220
NoneNo IPR availableTMHMMTMhelixcoord: 94..113
NoneNo IPR availableTMHMMTMhelixcoord: 120..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2322458..2338148 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1294.1mRNA_C-linearis_contig11.1294.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2322336..2340406 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1294.1 ID=prot_C-linearis_contig11.1294.1|Name=mRNA_C-linearis_contig11.1294.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=361bp
MAAKKGENPVLPVLNSPSYMTPSRRWRAIDPITPMVSGLVQGIRFDGPVD
RFRVAPRELCRLASVLGWTAVVIGAGEIAIGAVLFSTWRREGAWWAGLLG
VMLGMVATGITADAPVGTPLVAWLVGLSLVSILTGLSTLLTLDGARWLDT
KDVEVCAKSFDAVCQDFDCTCSGSDGSWDMCFSPGNGDCSGVESAPPVLL
ASSCALLTLCVISALLLAVGTKIKCLGGGVAVREDWAHSNPAKTPNITFS
PKPEEPGVTQHQHEQNEDEGGYQERGQQPLRGSREAGKIIVAEYKEEQKE
DGVVMCKEILTAAEPWAVGYVNRLAGGGNKKRRDELNNAERGGRGGDGGG
YGSGWAGASQ*
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