prot_C-linearis_contig11.1287.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1287.1
Unique Nameprot_C-linearis_contig11.1287.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length610
Homology
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: D8LMZ2_ECTSI (COG2350: Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 3.660e-261
Identity = 352/456 (77.19%), Postives = 396/456 (86.84%), Query Frame = 0
Query:  155 GGGWVRAWESPHPARRKSSHLQGER--LGEADGDENLRSKKVPAPAPEDEIRDDDFSDEAMRRLMFDIDPDSDAKGPMYFGDAGMYGEEVDHMKYPEEVRFPQCFLAFCMDREDSKDEAKNYVTWGVRKHAHWEHLKWARIAKRTFDDDKDREAGILWDRSVLSPSKYRVIGNMFCIRSYTKEGALRLLEEDPYRKAGLFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSGIGNGKANRIDPMRDIMAKEGLDRECEYPVKFGKYDVFANMKWLQAEVEKKQHQQYMEHRLKLYQQRDRRIEREEINEGAIFRPGAYVYMGKRTETEWYDYWPTRIGPDSSGVDEEMFSLEASYPPVDHMEDDL 608
            GG  V  W S    RR+S  LQ +   LG+  GD+ LR K V A  PE++ R DD SDEAMRRLMFD+DPDS  KGPMYFGDAGMY +EV+H+KYPEEVRFPQ +LAFC+DRE+++DE KNYVTWGVR  AHWEH+KWARIAKRTF+DD DREAGILW+RSVLSPSK RVIGNMFCIRSYTKEGALRLLEEDPYRK+GLFGTVS+YRYPYNMGG FNWHLS FPYLALCMDKKG   AKLRE+N  AHL+YYE+TRRCIG GP+L S+L ED P++KP+GSL+FFNAINDEEA+ETAEGDP+NQAGL+DSVF+ARFNEIDLSGIG  +ANRIDPMRD+MAKEGLDRECEYPVKFGKYD+F NMKWL+ EVEKKQ QQYMEHRLKLYQQRDRRIEREEINEGA+FRPG YVYMGKRTETEWYDYWPT+ GPD+    EE ++++A YPPVDH EDDL
Sbjct:   80 GGRGVGGWRSHGATRRRSGCLQAKNTPLGDGKGDDLLRLKNVAAAVPEED-RVDDHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKG--SAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVRANRIDPMRDMMAKEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRDRRIEREEINEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDL 532          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A6H5JNB6_9PHAE (YCII domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE)

HSP 1 Score: 662 bits (1709), Expect = 4.700e-233
Identity = 329/490 (67.14%), Postives = 368/490 (75.10%), Query Frame = 0
Query:  207 DFSDEAMRRLMFDIDPDSDAKGPMYFGDAGMYGEEVDHMKYPEEVRFPQCFLAFCMDREDSKDEAKNYVTWGVRKHAHWEHLKWARIAKRTFDDDKDREAGILWDRSVLSPSKYRVIGNMFCIRSYTK--------------------------EGALRLLEEDPYRKAGLFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAHLKYYEKTRR-CIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSGIGNGKANRIDPMRDIMAKEGLDRECEYPVKFGKYDVFANMKWLQAEVEKKQHQQYMEHRLKLYQQR-------------------------------------------------------------DRRIEREEINEGAIFRPGAYVYMGKRTETEWYDYWPTRIGPDSSGVDEEMFSLEASYPPVDHMEDDL 608
            D SDEAMRRLMFD+DPDS  KGPMYFGDAGMY +EV+H+KYPEEVRFPQ +LAFC+DRE+++DE KNYVTWGVR  AHWEH+KWARIAKRTF+DD DREAGILW+RSVLSPSK RVIGNMFCIRSYTK                          EGALRLLEEDPYRK+GLFGTVS+YRYPYNMGG FNWHLS FPYLALCMDKKG  KAKLRE+N  AHL+YYEKTRR CIG GP+L S+L ED P++KP+GSL+FFNAINDEEA+ETAEGDP+NQAGL+DSVF+ARFNEIDLSGIG  +ANRIDPMRD+MA+EGLDRECEYPVKFGKYD+F NMKWL+ EVEKKQ QQYMEHRLKLYQQR                                                             DRRIEREE+NEGA+FRPG YVYMGKRTETEWYDYWPT+ GPD+    EE ++++A YPPVDH EDDL
Sbjct:   17 DHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKASAIHLGYFYVLLRKIGSDEAVAGRKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKG--KAKLREKNNDAHLEYYEKTRRRCIGEGPILSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVRANRIDPMRDMMAQEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRCVGGGAVVTSADDTPRWYDGMPSYGGRNVRAGTAVKAPVSAAVEGFSDVWLKAAHTVVVARDRRIEREEVNEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDL 504          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A835ZAP4_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.430e-30
Identity = 82/254 (32.28%), Postives = 125/254 (49.21%), Query Frame = 0
Query:  257 FLAFCMDREDSKDEAKNYVTWGVRKHAHWEHLKWARIAKRTFDDDKDREAGILWDRSVLSPSKYRVIGNMFCIRSYTKEGALRLLEEDPYRKAGLFG------TVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKS-KPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSGIGNGKANRIDPMRDIMAKEGLDRECEYP 503
            +LA C+DR+D+   A+      +       H+ WAR + R     +   A +L+ R++L+P   R IGN+  I + ++  A  L   +PY  AGLF          +Y +P N   E N+ L  +PY  + MD  G      R   R AHL Y       +G  PLL          +  P+GS+VF NA + E A+  A+ DPY  AG+F+SV +    +ID+ G    +   +DP+RDI+ +EGL  + +YP
Sbjct:   88 YLAVCLDRDDADAFARARCPNMIA------HVAWARRSTRV----EGARARVLFSRALLAPDMQRTIGNLVGIAAASRADAEALWASEPYTAAGLFAGGGGGAAQLLYAWPRNDHTELNYDLRAYPYAIVAMDANGA--LPTRRATRPAHLAYLTSLGCVVGAAPLLPLGARGGGGAAGDPVGSVVFVNAESAEAARAIADADPYAAAGVFESVRVYALCDIDVEGTSQARPQTVDPVRDILEREGLTTKDDYP 329          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A7S2DFL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFL6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.040e-17
Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 0
Query:  308 ILWDRSVLSPSKYRVIGNMFCIRSY---TKEGALRLLEEDPYRKAGLFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSGI 476
            ILW+RS+   +   + G   C+  Y   ++E    L+ +DPY   G+F  + V+R+  N   E  +   + P++ LC+DK G      R   R  HL++ + ++  +  GP+  +       +  PIGS V   A + E A   ++ DPY QAG+F+SV I+ ++E+D++G+
Sbjct:   49 ILWERSLYEDNDMYIHG---CVTGYAAASREELDTLMSKDPYITEGVFSDIQVFRWKQNNDPELRFEPKSAPHVFLCLDKPGM--LATRTATRPDHLEWLQTSKLVMAAGPIFSAESGAGALEDGPIGSFVCAAADDVESAHAWSKEDPYAQAGIFESVRISHYSEMDVTGL 215          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A7S2P7F9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P7F9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.800e-10
Identity = 34/100 (34.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:  376 PYLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSG 475
            P + L  D+       LREE +  HL+Y  ++ + I  GPL  +   + DPKS   G+L+ FNA +  +A E  E DP   AG+++++ + R+N++D++G
Sbjct:   24 PTMLLAFDRPEAMSDGLREEVQNEHLEYLIRSEKIIACGPLHVATQEKSDPKSVAAGTLMIFNAKDRNDAIEFVENDPMAVAGVYETMTVHRYNQLDVTG 123          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A7S0EWI6_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWI6_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 7.100e-9
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  322 VIGNMFCIRSYTKEGALRLLEEDPYRKAGLFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSGIG 477
            V+GN+  ++  +        + DP+   G + +++ +R+  +   E N       Y   C+DK     ++LRE  R AHL +  +  R + +G  L S L E       +G+L+F N    EE +  A  DPYNQAGLF+SV +A   +  LS  G
Sbjct:  196 VLGNLNVVKGSSLADVAAWGQGDPHDVVGAYASLTTHRWLRSPDPELNLPAPGPCYGVYCLDKPA--SSELREATRDAHLAWLAEGGR-VHLGGALQSPLGE---AVGNVGTLLFVNGDELEEVRRWATEDPYNQAGLFESVLVAPVTQYALSAAG 345          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A7S3EF78_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EF78_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 3.400e-7
Identity = 55/201 (27.36%), Postives = 91/201 (45.27%), Query Frame = 0
Query:  276 TWGVRKHAHWEHLKWARIAKRTFDDDKDREAGILWDRSVLSPSKYRVIGNMFCIRSYTKEGALRLLEEDPYRKAGLFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAK-LREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSG 475
            T  +R     EHL W   +KR         AG ++D++ +       IG++   R+   +       +DPY   G+F   S   +      E    L+   Y+ +C D+ G   AK LR E R  HL++++ + R   +GP      P  D  S  +GS++     ++EE  + ++ DPYN AG+F+SV I   + +   G
Sbjct:   59 TQDLRAQTRPEHLNWIVASKRALF------AGPMFDKAAVP------IGSLVIARAKDMKDIEEWNAQDPYASVGMFERESFREWKMVYRPEAP--LTDPIYVIICSDRDG---AKDLRAEVRPKHLEWWKSSGRKGFIGPF-----PAADG-SGAVGSMIITEGKSEEEVTDWSKSDPYNVAGVFESVEIYPMSTVLFDG 236          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A840CDM8_9RHOB (YCII domain-containing protein n=2 Tax=Actibacterium TaxID=1433986 RepID=A0A840CDM8_9RHOB)

HSP 1 Score: 58.5 bits (140), Expect = 3.680e-7
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 0
Query:  377 YLALCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEI 471
            +  +C DK G    + R+ NR AHL Y ++T      GP LD             GSL+        +A+  AEGDPY QAGLF+SV I  +N +
Sbjct:    4 FAVICKDKPGH--LETRKANRDAHLSYLKETGVVTQAGPFLDE-------AGDMCGSLLILEVGALSDAQAWAEGDPYAQAGLFESVAIQHWNRV 89          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A5R9JI87_9PROT (YciI family protein n=1 Tax=Lichenicoccus roseus TaxID=2683649 RepID=A0A5R9JI87_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 8.040e-7
Identity = 36/100 (36.00%), Postives = 48/100 (48.00%), Query Frame = 0
Query:  377 YLALCMDKKGRGKAKLREENRAAHLKYYEK-TRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEIDLSG 475
            ++  C DK G     LR   R+AHL Y ++     I  GPLLD       P  +  GSL+  N     EA+  A GDPY +AGLF+S  I  +  +   G
Sbjct:    3 FMINCTDKPG--SFDLRAATRSAHLAYLQRHAATLIQAGPLLD-------PDGRSTGSLLLVNVPGRSEAEALAAGDPYAEAGLFESTVIRGYRSVFRDG 93          
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Match: A0A2D5BJ24_9RHOB (YCII domain-containing protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2D5BJ24_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 2.340e-6
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 0
Query:  380 LCMDKKGRGKAKLREENRAAHLKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAEGDPYNQAGLFDSVFIARFNEI 471
            +  DK G     LR E R AHL Y E+T      GP LD          +  GSL+     N   A++ AE DPYN+AGLF+SV ++++ ++
Sbjct:    6 ITRDKPGH--LHLRVETRDAHLAYIEETGIVEVAGPFLDDT-------EQMCGSLIVLEVENMAAAQDWAENDPYNKAGLFESVTLSQWKKV 88          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LMZ2_ECTSI3.660e-26177.19COG2350: Uncharacterized protein conserved in bact... [more]
A0A6H5JNB6_9PHAE4.700e-23367.14YCII domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZAP4_9STRA1.430e-3032.28YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2DFL6_9STRA3.040e-1730.23Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2P7F9_9STRA8.800e-1034.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0EWI6_9EUKA7.100e-930.77Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S3EF78_9RHOD3.400e-727.36Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A840CDM8_9RHOB3.680e-736.84YCII domain-containing protein n=2 Tax=Actibacteri... [more]
A0A5R9JI87_9PROT8.040e-736.00YciI family protein n=1 Tax=Lichenicoccus roseus T... [more]
A0A2D5BJ24_9RHOB2.340e-636.96YCII domain-containing protein n=3 Tax=Proteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.1060coord: 375..473
e-value: 1.8E-19
score: 71.6
coord: 256..366
e-value: 3.6E-6
score: 28.9
NoneNo IPR availablePANTHERPTHR33606FAMILY NOT NAMEDcoord: 377..469
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
IPR005545YCII-relatedPFAMPF03795YCIIcoord: 379..469
e-value: 1.7E-6
score: 28.3
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 377..469

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2292299..2302597 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1287.1mRNA_C-linearis_contig11.1287.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2291682..2302846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1287.1 ID=prot_C-linearis_contig11.1287.1|Name=mRNA_C-linearis_contig11.1287.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=610bp
MEKWRRGGRVARPDRVCPGFVQPVRSRDHQPYSTETMTMPGARAFGESAG
PPPSSPPRRMAVGGNRCRRGRIIGSGVGRTGFVATTHAALLTVLLVGLGP
AGCRSFVVSPPTPGGAFVVRSFSGGGGGNGAAAGGSAARTGVACRLGAMG
DHAAGGGWVRAWESPHPARRKSSHLQGERLGEADGDENLRSKKVPAPAPE
DEIRDDDFSDEAMRRLMFDIDPDSDAKGPMYFGDAGMYGEEVDHMKYPEE
VRFPQCFLAFCMDREDSKDEAKNYVTWGVRKHAHWEHLKWARIAKRTFDD
DKDREAGILWDRSVLSPSKYRVIGNMFCIRSYTKEGALRLLEEDPYRKAG
LFGTVSVYRYPYNMGGEFNWHLSTFPYLALCMDKKGRGKAKLREENRAAH
LKYYEKTRRCIGVGPLLDSNLPEDDPKSKPIGSLVFFNAINDEEAKETAE
GDPYNQAGLFDSVFIARFNEIDLSGIGNGKANRIDPMRDIMAKEGLDREC
EYPVKFGKYDVFANMKWLQAEVEKKQHQQYMEHRLKLYQQRDRRIEREEI
NEGAIFRPGAYVYMGKRTETEWYDYWPTRIGPDSSGVDEEMFSLEASYPP
VDHMEDDLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005545YCII
IPR011008Dimeric_a/b-barrel