prot_C-linearis_contig11.1150.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1150.1
Unique Nameprot_C-linearis_contig11.1150.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length519
Homology
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BLAST of mRNA_C-linearis_contig11.1150.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 1.910e-162
Identity = 319/448 (71.21%), Postives = 345/448 (77.01%), Query Frame = 0 
Query:   86 MYREQEAEEHSEDEDYEGPGKFDAFDRPAFKRRHIKNRAIQWALEDRKDYSKGGGIKYLGDKITQQMSRYATFKVDPDRPQTIEVTPIDEWWQFKKAPRDAGKMMSVKEAEEAMKKQENFLGPLSLANKILGKKTLEAAAREGGGSSRYGNLDREDTQVLQEAGVKLGGPED--GLDSLGNGGSGSEEDFGP-EKGDVDSDAGGEDXXXXDEVRSDXXXXXXXXXANEGGGTLHQDDEDLNDSXXEHVTDDEHHELQKLSRSVNAEGE--EEEDNYTVDGDPGRASPTAPALDAGAPAAPGATGDSSSPISAGGS--------GKRAAGAMEETGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RKAQKKGAQEITQANVVATLKRYGGRLASEPLLRHFVAALKANGKKNT-AALATLKEILKKVATKVDDAIDGTVWVLKKHYS 518
            MYREQEAEEHSEDEDYEGPGKFDAF+RPAFKRR IK RAIQWALEDR+D+++GGGIKY GDKITQQMSRYATFKVDP+RPQTIEVTPIDEWWQFKKAP+D GK M+VKEAEE MKKQENFLGPLSLAN+ILGKK+LEAAA+E    SRYG LD EDTQVL+EAG+KL  PED   +D  G+G SGS+   G  EKG+VDSDAGGED    DEVRSDXXXXXXXXX              LND X EH+TDDEHHELQKLSRSVNAEG   EEED+YTV GD GRASPT P      PAA    GD +                GKR A AME  G  XXXXXXXXXXXXXXX   X  XX      R AQKKGAQEI QANVVATLKRYGGRLAS+ LL HFVAALKA+GKKN  AA+A L+ ILKKVATKVDDAI+GTVWVLKKH+S
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGKNMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKEKAEQSRYGGLDHEDTQVLKEAGMKLASPEDTQAVDGFGDG-SGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXXLNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGADXXXXXXXXXXXXXXXGKRGASAMEVGGGEXXXXXXXXXXXXXXXTGSXGEXXSGSKRARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS 447
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKK6_ECTSI1.910e-16271.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 115..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:98296..105254 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1150.1mRNA_C-linearis_contig11.1150.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 98265..105958 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1150.1 ID=prot_C-linearis_contig11.1150.1|Name=mRNA_C-linearis_contig11.1150.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=519bp
MSRKAAPAGKRAAPRGPGGKGKAPPDKDGVIISVEEKVWTLRVGAKDPPC
NVARFEEMWVGKGDSKQKVPRPPFDDPSVFSKPAYMYREQEAEEHSEDED
YEGPGKFDAFDRPAFKRRHIKNRAIQWALEDRKDYSKGGGIKYLGDKITQ
QMSRYATFKVDPDRPQTIEVTPIDEWWQFKKAPRDAGKMMSVKEAEEAMK
KQENFLGPLSLANKILGKKTLEAAAREGGGSSRYGNLDREDTQVLQEAGV
KLGGPEDGLDSLGNGGSGSEEDFGPEKGDVDSDAGGEDDDFGDEVRSDDE
EEVGNDDANEGGGTLHQDDEDLNDSDDEHVTDDEHHELQKLSRSVNAEGE
EEEDNYTVDGDPGRASPTAPALDAGAPAAPGATGDSSSPISAGGSGKRAA
GAMEETGAAGAGAGGDATGVAGAGGGGGGSSSSSKRARKAQKKGAQEITQ
ANVVATLKRYGGRLASEPLLRHFVAALKANGKKNTAALATLKEILKKVAT
KVDDAIDGTVWVLKKHYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011039TFIIF_interaction