prot_C-linearis_contig105.945.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.945.1
Unique Nameprot_C-linearis_contig105.945.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length761
Homology
BLAST of mRNA_C-linearis_contig105.945.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.870e-103
Identity = 215/404 (53.22%), Postives = 245/404 (60.64%), Query Frame = 0
Query:    1 MDADETCLVVSPCNSCRINKNGVQACIIRKHNARLTAIKKEDLAARHRQCIKPDQAITIFKLVDRDTGEESVEFDPEMVFQRACPSCIHLKTCIQGGHELVDWTPDGGGGRTPRNKRXXXXXXXXXXXXXXXXXXX-----------SSKARKLSDE-SKPSL-LPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFGRMVEGAAETEE---------SEGRXXXXXXXXXXXXXXXXXARSGEPRYRAAGGADPDATDSEGDASADVGSVSNGCAP--------------PPQSIASQLDALAAQEDFLLQQYQADMRHLEEAKAARETEILVAQAALEDIKATRETTKSNIAEQRKKLVAERDRLTHLRCQEMIREEAEHRQKKDVLWSAVEPAAA 368
            MD D TCLVVSPCN+CRINKNGVQACI+RKHNARLTA+K+++LAARHRQC+KPDQ +TIFKLVDR+TGEESVE+ P+M+FQR C SCIHLKTCI GGHEL DWTP+GG GR  +NKR                              SSK RK++D   KPS+ +P                                      R  EGA    E         S+GR                 A   E  + AA  AD   TD + D + D   VSNG                 P QSIASQLDALAAQED LLQQ++ADMRHL+EAKA+RE EI VAQAALE IKATRETTKSN AEQRK++VAERDRLTHLRCQEM+REEAEHRQKKD +WSAVEPA A
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAA-------------------------------RKSEGATTAPEELGRSTRWSSKGRKVSAPEAFEEAVPSPAAAAPPEDEFCAA--ADAVDTDEDVDVN-DHACVSNGAVXXXXXXXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAMA 370          
BLAST of mRNA_C-linearis_contig105.945.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.950e-28
Identity = 51/111 (45.95%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 MDADETCLVVSPCNSCRINKNGVQACIIRKHNARLTAIKKEDLAARHRQCIKPDQAITIFKLVDRDTGEESVEFDPEMVFQRACPSCIHLKTCIQGGHELVDWTPDGGGGR 111
            MD D   L++  CN C  NK   + C+ R+HN R++ +++++L   HRQC+KPDQAITI+KL D +T E+ +EFD +++FQ AC  C+++K+C++ GH+L+DW P   GGR
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGR 111          
BLAST of mRNA_C-linearis_contig105.945.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.830e-20
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = 0
Query:    1 MDADETCLVVSPCNSCRINKNGVQACIIRKHNARLTAIKKEDLAARHRQCIKPDQAITIFKLVDRDTGEESVEFDPEMVFQRACPSCIHLKTCIQGG 97
            MD D   L++  CN C  NK   + C+ R+HN R++ +++++L   HRQC+KPDQAITI+KL D +T E+ +EFD E++FQ AC  C+++K+C++ G
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLG 97          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.945.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T9_ECTSI1.870e-10353.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0U1_ECTSI2.950e-2845.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE4.830e-2045.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 281..301
NoneNo IPR availableCOILSCoilCoilcoord: 309..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:166396..172636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.945.1mRNA_C-linearis_contig105.945.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 166337..173471 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.945.1 ID=prot_C-linearis_contig105.945.1|Name=mRNA_C-linearis_contig105.945.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=761bp
MDADETCLVVSPCNSCRINKNGVQACIIRKHNARLTAIKKEDLAARHRQC
IKPDQAITIFKLVDRDTGEESVEFDPEMVFQRACPSCIHLKTCIQGGHEL
VDWTPDGGGGRTPRNKRKSASSSPSKSPTAQQQQEPSSKARKLSDESKPS
LLPLPSPSPSITIPGPALKAAAAAAAAAAAAAAASPEPGFGRMVEGAAET
EESEGRPRRRSAKARMASAPAPAARSGEPRYRAAGGADPDATDSEGDASA
DVGSVSNGCAPPPQSIASQLDALAAQEDFLLQQYQADMRHLEEAKAARET
EILVAQAALEDIKATRETTKSNIAEQRKKLVAERDRLTHLRCQEMIREEA
EHRQKKDVLWSAVEPAAAPETTTGGSCSSGGGSGGVPEPITSLSLTAAHR
GLEGAAPASPSPSPAVNRPEEDGGEERCATLLPPSPPPSPSASASSPRSS
ASPRPAVTPVVAADEKLAVGERVEAAAAAAVEMDGGEAAAGCKEEANHKS
CSLPRDGGDGGDVVGDGAVQAPKAGENPVGGDVKSGAGTTSTAAEVGGES
LAFEAEKEEGGQEEEDGCSAAAGNGEAANGLRKEVKGHQGWQSSAVVVGA
GGSNGNHAAAAQRKGVVEDDEGPPPPQAAPGGKTPKNSSDAALVSVVAAG
PGPESEPVQKNGDTGQQDDGGDSDSMDVDRDEDEDEDEGEGEEEGDAEEG
NGGGGSDQNTPAPGSKEKGGGTPLEANGGGAAVRAPSTGSSGRTTRQGAR
QGPPHGDVVP*
back to top