prot_C-linearis_contig10.566.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.566.1
Unique Nameprot_C-linearis_contig10.566.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length717
Homology
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BLAST of mRNA_C-linearis_contig10.566.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 5.230e-29
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0 
Query:  301 RGDYRYVRILDVDSDGLYQRVVNACERVGSYRVVGWCKRRWLMDMLFECRRDAVAAVDDVEHLHLRSARLGRPIKILLKPADFEAVFSAS 390
            R D RYVRILD+DSD LYQ V++AC+RVGS+RVVGWCKRRWLMD+LFE RRDA AA+DD++HL L S+R  RPIK LLKPA F+  F+++
Sbjct:   56 RDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGFTSN 145
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BLAST of mRNA_C-linearis_contig10.566.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.530e-28
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 0 
Query:  301 RGDYRYVRILDVDSDGLYQRVVNACERVGSYRVVGWCKRRWLMDMLFECRRDAVAAVDDVEHLHLRSARLGRPIKILLKPADFEAVFS 388
            R D RYVRILD+DSD LYQ V++AC+RVGS+RVVGWCKRRWLMD+LFE RRDA AA+DD++HL L S+R  RPIK LLKPA F   FS
Sbjct: 1088 RDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFS 1175
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQH0_ECTSI5.230e-2968.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1S2_9PHAE2.530e-2871.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44
NoneNo IPR availableCOILSCoilCoilcoord: 592..641
NoneNo IPR availablePANTHERPTHR22891EUKARYOTIC TRANSLATION INITIATION FACTOR 2Ccoord: 398..645
NoneNo IPR availablePANTHERPTHR22891:SF132ARGONAUT-LIKE PROTEINcoord: 398..645
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..716
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2444514..2449654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.566.1mRNA_C-linearis_contig10.566.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2444471..2451367 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.566.1 ID=prot_C-linearis_contig10.566.1|Name=mRNA_C-linearis_contig10.566.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=717bp
MNSTSPSASKRKHSRQLAAAAAVAAAATEQGESEEEKGEEKEEEQRYGGT
TERRRRKRSSSPGRKSRGRKRHRHRDRDRDRDRDRDRDRDSDRPPRPRPE
DPPTEPPEQPGELLLPGALTAQDAASLGSVPDDLPSPPGVGGAAAAAAAT
IGGLASQVSMDDGGRYGATKSPHGDGGGMARPWSASSGGKGPASASGIAA
AASAAAVAAGGEGKAAAERARAETKGWRRVSPAQVYHSSYGASERETTLS
AFHLSDGSPGSYAGGHNGGSASASASTAVDTTKMSASVTSRVPIELGEGG
RGDYRYVRILDVDSDGLYQRVVNACERVGSYRVVGWCKRRWLMDMLFECR
RDAVAAVDDVEHLHLRSARLGRPIKILLKPADFEAVFSASPGTGVSPAHA
ATAAVTPSPAAGRGASLPPPSDHPPLVDNNTGNNSKSPQSAWQPHAPPPA
ALTAAAKAVEAVVASPQPSSKAAVVGSLLAADGAAPAAATATEAAAQVAT
ASSRQGYRGPEVGVVSLSLPAPEQQAPVVPKRNGGAGGAGGDGCGGGDGS
SRVSKVGRPKQSRQKLRAPRQKQTRKRKHQEGLPSPVPRQTRQQKRQQKK
QQQQEDQQKQKRQLLQEDQQQQQQEQEQQEEQRRVQGQRQTTPLWSNPQQ
PVTAVVAPAAATPAVLTTNALPQQQEAAAAAAAAAEPSWPTDAGWESHSN
QLRAPASRADPAACQP*
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