prot_C-linearis_contig1.120.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig1.120.1
Unique Nameprot_C-linearis_contig1.120.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length354
Homology
BLAST of mRNA_C-linearis_contig1.120.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.350e-143
Identity = 210/280 (75.00%), Postives = 235/280 (83.93%), Query Frame = 0
Query:   74 PGKMALTVMAALVPCAVLIGVATNGGGTNGMTSKAVDGGGGAGRRLQTATYSFATQLEMTICLTEDHGTDSATASGEQFKEAVMNIFGLEDPDLVKVDEEVTRCNVDDWQRRISIYNTESESGSAADVASAQVDQIYPEPKTSVFFGDIAADITAQDPEISFPAEDLDLESLGFLVIWLDSSGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRRDKEAELDSYGGGTAGKDMGAPAPPSATSSNPYGGHYSAEEHKSGK 353
            PGK+ L  +AAL+P  VLIGV+T+G G NG TSKAVDG   AGRRLQTATY FATQLEMTICLTE+H +DSAT++ +Q K AVM IFG+E  D V VD+ +TRC VD+WQRR+SIYN   E+GSAAD+ASAQVDQIYP   T+ F  DIA  I AQD E+ F   DLDL SLGFLVIWLDS+GDVV  QGTTTSK+VV+IGGTDVWWPWWAWLIYA VVLCCICPMLFFFFKWRRDKEAELDSYGGG+ GKDMGAPAPPSATSSNPYGG+YSAEE+KSGK
Sbjct:    7 PGKLVLKALAALIPLMVLIGVSTSGNGMNGATSKAVDG---AGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDAELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS-GKDMGAPAPPSATSSNPYGGNYSAEENKSGK 282          
BLAST of mRNA_C-linearis_contig1.120.1 vs. uniprot
Match: A0A835YQ20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ20_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.420e-26
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = 0
Query:  115 AGRRLQTATYSFATQLEMTICLTEDHGTDSATASGEQFKEAVMNIFGLEDPDLVKVDEEVTRCNVDD-WQRRISIYNTESESGSAADVASAQVDQIYPEPKTSVFFGDIAADIT-AQDPEISFPAEDLDLESLGFLVIWLD-SSGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWRR 308
            AG R          Q  + +CL  D     AT +    + A  +  GL     VK    V  C  +  WQ RIS++NT +   SA+ +ASAQVD IY     ++FF  ++  +T A    +  P++ L LESLG+LV+WLD ++G    T G T+S + + IGGT V+WP W W +Y  VV+C +CP + F F +RR
Sbjct:   13 AGLRSAHGAAFGEAQAAIILCLKPDVTAPDATEA--MVEGAARSALGLSADVPVKASLAVDVCTANAAWQARISVWNTATAVNSASGIASAQVDGIY--YNRTLFFRSMSTGLTDAGATNVPDPSQ-LTLESLGYLVVWLDGTNGSSGGTTGGTSSNDTLEIGGTTVYWPGWMWAVYVAVVVCLVCPCMGFIFAYRR 204          
BLAST of mRNA_C-linearis_contig1.120.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.620e-8
Identity = 48/191 (25.13%), Postives = 90/191 (47.12%), Query Frame = 0
Query:  123 TYSFATQLEMTICLTEDHGTDSATASGEQFKEAVMNIFGLEDPDL------VKVDEEVTRCNVDDWQRRISIYNTESESGSAADVASAQVDQIYPEPKTSVFFGDIAADITAQDPEISFPAEDLDLESLGFLVIWLDSSGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPMLFFFFKWR 307
            TY+  TQ ++      +   D+  A        +M++F +E          V+  E    C+    +  I+I N  S++ SAA +++ Q++ +    ++S F   +A+ +  +D  +S     L   SLG++V++ D    V +    +   + V+  G D WWPW   L++  V+LCCICP+    + +R
Sbjct:  208 TYTSRTQFDLCAAPGSELEEDALRAG-------IMDVFEVEQEQTEGTTGTVEKREVTEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELV----RSSEFTTLLASSL--EDSNLSVNPAGLTYSSLGYIVLY-DEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPLAACIYYYR 384          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIZ7_ECTSI1.350e-14375.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ20_9STRA2.420e-2637.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JL50_9PHAE5.620e-825.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 305..353
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..281
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 282..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1721711..1728177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.120.1mRNA_C-linearis_contig1.120.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig1 1721711..1728177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig1.120.1 ID=prot_C-linearis_contig1.120.1|Name=mRNA_C-linearis_contig1.120.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=354bp
IRWFAGNFETLTPRVSLVLESCRSRQKGKKKRERRERGITVIPALSKDGE
RRQHRERGGESRNGERTSVGMASPGKMALTVMAALVPCAVLIGVATNGGG
TNGMTSKAVDGGGGAGRRLQTATYSFATQLEMTICLTEDHGTDSATASGE
QFKEAVMNIFGLEDPDLVKVDEEVTRCNVDDWQRRISIYNTESESGSAAD
VASAQVDQIYPEPKTSVFFGDIAADITAQDPEISFPAEDLDLESLGFLVI
WLDSSGDVVSTQGTTTSKNVVSIGGTDVWWPWWAWLIYAGVVLCCICPML
FFFFKWRRDKEAELDSYGGGTAGKDMGAPAPPSATSSNPYGGHYSAEEHK
SGK*
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