prot_C-linearis_contig1.10.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig1.10.1
Unique Nameprot_C-linearis_contig1.10.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length320
Homology
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BLAST of mRNA_C-linearis_contig1.10.1 vs. uniprot
Match: A0A6H5KDE4_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE4_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.370e-58
Identity = 112/182 (61.54%), Postives = 133/182 (73.08%), Query Frame = 0 
Query:  143 EENLARAGAAFDRGMKAYMREDAEVALVALVESLRVRERILHPFNKELLRTLRYASYAAVATQRWAVAHSFLSRWLHPMETMFGAAEVWDIAAMRIDAGLVLDKLHATT----DVPSRLEGSLQS-HSSSGQPDAADGRASNATCSELAEGLRWVWICLGRDSGLPAEADALEVCAEHGVSL 319
            EE L  A   F +GM+AYM+E+ +VALVAL +SL VRE +LHPFNKELLRTLRYASYAA+ATQ W  A+SFLSRWLHPM+ M+GAAEVWDIAAMR+DAGLVLDKL   T     VP ++  +L   +  SGQPD A G    A   E+A GLRW+W+CLGR SG+ AE  ALE  A HGV+ 
Sbjct:  324 EERLLGAARDFRKGMEAYMQEEPDVALVALQKSLLVRESLLHPFNKELLRTLRYASYAAIATQSWFKAYSFLSRWLHPMDVMYGAAEVWDIAAMRVDAGLVLDKLSEVTRGPGTVPPQVGEALPGLNKLSGQPDTA-GSMDPAAFGEMATGLRWIWLCLGRGSGISAEIAALESFAAHGVTF 504
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BLAST of mRNA_C-linearis_contig1.10.1 vs. uniprot
Match: D7FJ22_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ22_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.290e-58
Identity = 108/185 (58.38%), Postives = 131/185 (70.81%), Query Frame = 0 
Query:  143 EENLARAGAAFDRGMKAYMREDAEVALVALVESLRVRERILHPFNKELLRTLRYASYAAVATQRWAVAHSFLSRWLHPMETMFGAAEVWDIAAMRIDAGLVLDKLHATT--------DVPSRLEGSLQSHSSSGQPDAADGRASNATCSELAEGLRWVWICLGRDSGLPAEADALEVCAEHGVSL 319
            EE L  AG  F +GM+AYM+E+ +VALVAL +SL VR+ +LHPFNKELLRTLRYASYAA+AT  W+ A+SFLSRWLHPM+ M+GAAEVWDIAAMR+DAGLVL+KL   T         V   L G ++    SGQP+   G    A   E+A GLRW+W+CLGRDSGL  E  ALE   +HGV+ 
Sbjct:  212 EERLLGAGRNFRKGMEAYMQEEPDVALVALEKSLLVRQSLLHPFNKELLRTLRYASYAAIATHSWSKAYSFLSRWLHPMDAMYGAAEVWDIAAMRVDAGLVLNKLSEVTCGPGTVPPQVGEALPGLIEL---SGQPETG-GSMDPAAFGEMAAGLRWIWVCLGRDSGLSGEIAALESFGDHGVTF 392
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDE4_9PHAE1.370e-5861.54SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ22_ECTSI4.290e-5858.38SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 60..283
e-value: 1.4E-7
score: 33.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:291999..294127 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.10.1mRNA_C-linearis_contig1.10.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig1 291355..303393 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig1.10.1 ID=prot_C-linearis_contig1.10.1|Name=mRNA_C-linearis_contig1.10.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=320bp
MCYVLYCSLKEPSNDFRLGLGSPSLNNDHWGAHAGFCWPIRVCSCPGRVH
HLVGGSSTFCNKCGRGSQRPVGPRSASWEAGQGPPQGSAAAASAPGGRDA
AKQAHPHHPPDTGHHGRGGATMSLVDTMAEEQMRAKSESCCEEENLARAG
AAFDRGMKAYMREDAEVALVALVESLRVRERILHPFNKELLRTLRYASYA
AVATQRWAVAHSFLSRWLHPMETMFGAAEVWDIAAMRIDAGLVLDKLHAT
TDVPSRLEGSLQSHSSSGQPDAADGRASNATCSELAEGLRWVWICLGRDS
GLPAEADALEVCAEHGVSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf