mRNA_C-linearis_contig99.17190.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE) HSP 1 Score: 778 bits (2008), Expect = 1.990e-271 Identity = 380/466 (81.55%), Postives = 418/466 (89.70%), Query Frame = 1 Query: 79 MIIRPRQRII--ASVAVASVALL--STSPAVSGAPVVVTDYKQLVGTVGSTNDYNTGERFSREAMVLVHQG-EKCSPDFDRLGLLGFDKFPEMYALVSVDADHADKELMSNLGVNPADVSNPQLCPVLSIIPRRSTIEAPAVIVPQADRVGSYHLPAVKTQQVSVGVINEHDFKLDIHYQWWDDPIRPTHIRTLEPGTENWMLSYKTTYLVALNKETQEEVGRYLVTGHGLFTVADRACTAETCGTSEGAETPQDRASREARRQMNDGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGVLKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPEKWSNFI 1461
M +RPRQ + +VA+AS ALL ++SP VSGAPVVVTDYKQLVGT+GS NDY+TGERF+RE MVLVH+G E C+PDFD LGL F P+MY+LVSVDADHADKEL+ LGV+PA +S P+ CP LSI+PRRST+EAPAVI+P D+ GSYHL AVKTQQVSVG++NE DF LDIHYQWW++P++PTHIRTL PGTENWMLSYKTT ++ALNKETQEEV RYLV GHGLFTVA+R+CTAETCGTSEG ETPQD ASR AR+QM+ GRL NN++QPEGLPRFTEVGFKK TVPDDVWDL+KTYYEENK SPKKEKW KNNVFTNNVEAPSYMVNLPENG LKE IF GLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPS+FHGN+YANAFVHYKPKDPEKWS FI
Sbjct: 1 MSVRPRQSSLNPVAVALASAALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAREGMVLVHKGDESCAPDFDTLGLSVFGDHPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHLNAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTETPQDVASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKTTVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHYKPKDPEKWSKFI 466
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA) HSP 1 Score: 457 bits (1176), Expect = 8.160e-147 Identity = 237/458 (51.75%), Postives = 308/458 (67.25%), Query Frame = 1 Query: 100 RIIASVAVASVALL---STSPAVSGAPVV--VTDYKQLVGTVGSTNDYNTGERFSREAMVLVHQGEKCSPDFDRLGLLGFDKF-PEMYALVSVDADHADKELMSNLGVNPADVSNPQLCPVLSIIPRRSTIEAPAVIVPQADRVGSYHLP--AVKTQQVSVGVINEHDFKLDIHYQWWDDPIRPTHIRTLEPGTENWMLSYKTTYLVALNKETQEEVGRYLVTGHGLFTVADRACTAETCGTSEGAETPQDRASREARRQMNDGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGVLKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPEKW 1449
R +++VAV ALL S+ A A V+ V Y+ L+ G+ +D +TG+RF RE M+L+++G KC+ DF + GL + + PE ALV+ D + D+ + G+ D + CP +I +RS ++ P V +D + + +K+Q+V +G +N++DF + + + W D RP H+R LEPG E+WM +Y++T LVA + E+ R V HGLFTVA R C E CG E E D AR Q R+ NN +QP GLPRFT+VGFKKI VPDDVWD++ TYY +NK +PK E+WGK NV+TNN+EAPSYMVNLPE G LK IF GLRPILEEWSGVELV T+CYG+R YT SWLANHVDT+ATH +S I+ VDQ+V +DWPL I+DHAGND+NITM PRD+VLYESATCVHGRPS+F G FYAN F+HYKP DP KW
Sbjct: 6 RPLSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVDDTDTGKRFEREVMMLLYEGGKCTADFKKHGLDEYGRLQPEDVALVAADVNKVDQVFLEKFGI--VDDGDDMPCPTAVVIRQRSPLQNPTFEVVGSDPDDPFAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERP-HLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVELDEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKW 460
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7S2UT49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT49_9STRA) HSP 1 Score: 240 bits (613), Expect = 9.120e-66 Identity = 111/196 (56.63%), Postives = 142/196 (72.45%), Query Frame = 1 Query: 868 RLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGVLKEGIFEGLRPILEEWSGV-ELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPEKWS 1452
R+ +NK P +P FTEVGF+K+ P DVW++I+TYY NK E W +N +TN+ E+P+YM++LPENG +K IF L+P LEEWSGV EL TACYG+RVY + L HVD +THA+SVI+ VDQDVEE W L IYDH+G+ +N+TM P D+VLYESA+C HGRP GN+Y N FVHY+PKDP W+
Sbjct: 281 RIRHNKEHPSIVPHFTEVGFEKVRTPPDVWEMIQTYYHANKEHTALEVWDDSNTYTNHFESPTYMIHLPENGRMKPEIFRRLQPYLEEWSGVDELEGTACYGIRVYQEGAELRGHVDRISTHAISVIINVDQDVEEPWYLHIYDHSGSAHNVTMAPGDMVLYESASCQHGRPFPLKGNYYTNTFVHYRPKDPALWA 476
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA) HSP 1 Score: 225 bits (573), Expect = 1.120e-61 Identity = 129/309 (41.75%), Postives = 175/309 (56.63%), Query Frame = 1 Query: 547 QVSVGVINEHDFKLDIHYQWWDDPIRPTHIRTLEPGTENWMLSYKT-TYLVALNKETQEEVGRYLVTGHGLFTVADRACTAETCGTSEGAETPQDRASREARR--------QMNDGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPE---NGVLKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKD 1437
+ +G ++ D LDI W + + + P ++W+ SY ++ LN + +VG V F+VA C G E +R RR N+ R N+ QP+ L FTE+GF+K +PDDVW+L+++YYE NK+S EKW N + N+ E+ +M+ LPE K IFEGLRP LEEWSG EL T YG+RVY N ++L NHVD ATH VS IM + + WPL IYDH GN++NIT+ P ++VLYESATCVHGRPS F G +Y NAF H++PK+
Sbjct: 29 EAHIGFGSDCDSDLDIF--WVNPQGEEVSVTKVAPQGQSWIGSYLNHKFVYRLNGK---KVGEATVKSKSQFSVAQ---CGHPCHEHYGEEPCLERLDGRIRRAQLQPVWDSQNEDRRQTNRIQPQNLKNFTELGFEKRKIPDDVWELLRSYYENNKDSIVLEKWPSTNPYINHWESVPFMIWLPELHTGDETKRKIFEGLRPHLEEWSGTELEHTDLYGMRVYKNNTFLENHVDRVATHVVSAIMHIADKQDIPWPLNIYDHYGNEHNITISPGEMVLYESATCVHGRPSLFQGEYYVNAFAHFRPKN 329
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7R9UF35_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF35_9STRA) HSP 1 Score: 194 bits (492), Expect = 6.600e-51 Identity = 96/213 (45.07%), Postives = 138/213 (64.79%), Query Frame = 1 Query: 829 RASREARRQMNDGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGV----------LKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKD 1437
R R + R ++D R+ N QP+ FT+VGF+K+ VP+D+W I+ Y++ + K E+W K N++ N+ E P+YMVNL ++ LK+ I++G +PI+E+W+G EL T+ YG+RVY N + LA+H D + S I+ VDQDV+E WPL IYDH+G +N+TM P D+VLYES CVHGRP G +YAN FVH++P D
Sbjct: 133 RYDRRSCRAVDDQRIKMNVNQPKTQNHFTDVGFRKMRVPEDIWKEIQNYWKWSPKKEKDEEWPKGNIYVNHWEVPTYMVNLEDHSEDPKGSLTGWQLKKRIWDGTKPIIEKWTGKELKSTSLYGIRVYHNGAILASHCD-RLPLVSSAIINVDQDVDEPWPLEIYDHSGKAHNVTMAPGDMVLYESHVCVHGRPFPLKGRYYANLFVHFEPMD 344
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7S1D171_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D171_CYCTE) HSP 1 Score: 188 bits (478), Expect = 2.000e-47 Identity = 99/244 (40.57%), Postives = 149/244 (61.07%), Query Frame = 1 Query: 868 RLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENG------VLKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPEKWSNFIT*NTSERTNDKMRSRSW*DIPLQYKQT----MGWYCVERG 1569
R+A + RQP+ + +T++GFKKI P+ V+ LIK ++++NK++ K E+WG N +TNN +P+YMV++ ++ VLK+ I++ R +EEW+G EL Q + YG+RVY S LA HVD + S I+ VDQDV+E WP+ +Y H G N+TM+P D+VLYES + +HGRP G FYAN F+H++P S R N KM + D+ +YK+ +G + E+G
Sbjct: 150 RVAMSLRQPQSMQNYTDIGFKKIKAPEKVFKLIKEFWDKNKDNRKLEQWGTGNTYTNNWASPTYMVSVEDSSLRGGGVVLKQHIWDAARETIEEWTGQELTQCSLYGIRVYEEGSLLATHVD-RLPLVSSAIINVDQDVDEPWPIEVYGHDGKATNVTMEPGDMVLYESHSVLHGRPFPLKGRFYANIFIHFEPI-----------GHSLRHNAKMEADHGKDVHAKYKEAAARGLGGHEAEQG 381
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7R9W969_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W969_9STRA) HSP 1 Score: 179 bits (454), Expect = 4.060e-45 Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 1 Query: 853 QMNDGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGV------LKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKP 1431
Q+ RLA + RQP+ + +T+ GFKK+ P+++ L++ Y+ ENK K E+W +TN+ EAP+YMV++ + G+ LK ++ RP +EEW+G+EL T+ YG+RVYT + LA HVD + S I+ V QDV+EDWPL +Y G YN+TMKP D+VLYES + +HGR G +YAN F+H++P
Sbjct: 65 QVEKDRLAMSIRQPQSVMNYTDTGFKKVRAPEELRKLLENYWNENKEKKKVEQWSTGYTYTNHWEAPTYMVSIEDGGLRGGGNSLKHKLWNAARPTIEEWTGMELAPTSLYGIRVYTEGAILAPHVD-RIPLISSAIINVAQDVDEDWPLEVYGRDGMAYNVTMKPGDMVLYESHSLIHGRVFPLKGRYYANIFIHFEP 262
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7S2PFM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PFM3_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.480e-44 Identity = 87/198 (43.94%), Postives = 126/198 (63.64%), Query Frame = 1 Query: 862 DGRLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSP--KKEKWGKNNVFTNNVEAPSYMVNLPENGV------LKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKP 1431
D R+ + RQP G+ +T++GFKKI P VWD +K ++E NK+ + E W K N +TN+ AP+YMV++ + + LK I+ + +EEW+G EL + + YG+RVYT S LA HVD + S I+ VDQDV+E WP+ +Y H G YN+TM+P D++LYES + +HGRP G +YAN FVH++P
Sbjct: 159 DDRVEMSLRQPAGMQNYTDIGFKKIKAPPAVWDQVKVFWEANKDRKNWQDENWPKGNTYTNHWVAPTYMVSVEDGRLRGAGSKLKNRIWNAAQSTIEEWTGQELTKCSLYGIRVYTEGSILATHVD-RMPLVSSAIINVDQDVDEPWPIEVYGHDGKAYNVTMEPGDMILYESHSVLHGRPFPLKGRYYANIFVHFEP 355
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A482SEQ1_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEQ1_9ARCH) HSP 1 Score: 179 bits (455), Expect = 2.380e-44 Identity = 90/198 (45.45%), Postives = 127/198 (64.14%), Query Frame = 1 Query: 868 RLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGV-----LKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPEK 1446
RL N QP +TEVGFKKITVP WD + +Y+ N + K EKW K +++ N+ AP M++ ++ + LK+ I+ ++PI+EEW G + T+ YG+RVY N S LA HVD + S I+QV QD++E WP+ +YDH+G +NITM+P D+VLYES T +HGRP G +YAN FVH++P D E+
Sbjct: 76 RLEMNLDQPAKQHNYTEVGFKKITVPKSAWDPLLHFYKNNVQNEKPEKWPKGSIYVNHWVAPPSMISFEDSSLRGGVQLKQLIWNTVKPIIEEWVGRVVEPTSLYGIRVYKNQSILATHVD-RLPLVSSAIIQVAQDIDEPWPIEVYDHSGKAHNITMQPGDMVLYESHTVLHGRPFPMKGRYYANVFVHFQPVDHEQ 272
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Match: A0A7S3MEL8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEL8_9STRA) HSP 1 Score: 180 bits (456), Expect = 4.630e-44 Identity = 86/197 (43.65%), Postives = 128/197 (64.97%), Query Frame = 1 Query: 868 RLANNKRQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENKNSPKKEKWGKNNVFTNNVEAPSYMVNLPENGV-----LKEGIFEGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPKDPE 1443
R+ NK QP +T +GFKK+ P W+ + ++YE NK+ K E W + N + N+ ++P+YMV+L + + +K I+ G++PILEEW+G +L T+ YG+RVY + + L+ HVD + S I+QV QD++E WP+ +YDHAG YN+TM+P ++VLYES T +HGRP G YAN FVH++P D E
Sbjct: 85 RMDMNKAQPSSQHNYTAIGFKKLKAPAAAWEPLISFYEANKDKEKLENWPRGNTYVNSWDSPTYMVSLEDQQLRGGMTVKAQIWAGVKPILEEWTGHKLEPTSLYGIRVYKDGAMLSTHVD-RLPLVSSCIIQVAQDIDEPWPIEVYDHAGKAYNVTMQPGEMVLYESHTVLHGRPFPMKGRTYANVFVHFQPVDHE 280 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17190.1 >prot_C-linearis_contig99.17190.1 ID=prot_C-linearis_contig99.17190.1|Name=mRNA_C-linearis_contig99.17190.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=463bp MIIRPRQRIIASVAVASVALLSTSPAVSGAPVVVTDYKQLVGTVGSTNDYback to top mRNA from alignment at C-linearis_contig99:459108..470747+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17190.1 ID=mRNA_C-linearis_contig99.17190.1|Name=mRNA_C-linearis_contig99.17190.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11640bp|location=Sequence derived from alignment at C-linearis_contig99:459108..470747+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:459108..470747+ >mRNA_C-linearis_contig99.17190.1 ID=mRNA_C-linearis_contig99.17190.1|Name=mRNA_C-linearis_contig99.17190.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2778bp|location=Sequence derived from alignment at C-linearis_contig99:459108..470747+ (Chordaria linearis ClinC8C monoicous)back to top |