mRNA_C-linearis_contig99.17188.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: D7G0H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI) HSP 1 Score: 371 bits (953), Expect = 1.680e-119 Identity = 195/321 (60.75%), Postives = 239/321 (74.45%), Query Frame = 2 Query: 74 VNPRELVDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAP-EALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTPYLTAKIQNASACLEFLREKHGRPTPEEDSFDFWDATAAVFPKGSGSI 1033 +NPRELV++ +++GF ALH+AVMMGA DCA+KLL+AGADPKA T +GATPI MAAQG+G G PEL+EGG QT RD+ VGTVPLH AVY G V LLAGPGGEVA NTK+S+GAT + P A+ LL E CPV +DV DDSGRTPL A+H+GHA+VV+ LLAAG+DPSL+DS G+SPLSA AW GKE CL A+L T+ G+ATLE+ +NLGATPLIFACQEN+K IA++LIAAGASL+A DLTG+TPY+ AK Q ASACL+ L E+HGRP+ EE+SF+F D + V G G++ Sbjct: 1 MNPRELVNRREEQGFTALHIAVMMGAADCARKLLDAGADPKASTPEGATPITMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDKVVGTVPLHTAVYSGRLEVFNTLLAGPGGEVAVNTKDSQGATPLHSACRAKGAAGPVAAMALLEEGCPVAVDVSVRDDSGRTPLFDAAHHGHAEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNF-DGLSMVTNLGGGTL 320
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5KW25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.170e-23 Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 2 Query: 632 LLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDL 877 LLAAG+DPSL+DS G+S +SA W GKE CL +L T+ G+ TLE+ +NLGATPLIFACQEN+K IA +LIAAGASL+A DL Sbjct: 8 LLAAGSDPSLQDSSGLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIA-KLIAAGASLDAKDL 88
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM) HSP 1 Score: 84.0 bits (206), Expect = 6.570e-13 Identity = 93/324 (28.70%), Postives = 130/324 (40.12%), Query Frame = 2 Query: 119 RALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVA--------GHPELEEGGA--------------AKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPV----------------------------KMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTPYLTAKIQNASACLEFL 940 + L+VA+ G D K LLE GAD G P+ +AA + +A G EL+ G+ + ++ LL GAD TL DE +G PLHVA ++ EALL G+V + + T + L + D + K++VDA + T L A GH ++V+ LLA GAD +L D G +PL AA + C ALL SG ++ + T L A + H + + L+A GA D G TP A I N AC E L Sbjct: 621 KGLNVAIFSGRDDILKYLLEEGADATLAGAKGYAPLHIAAALNKLACAEALLGSGKVELDARGSHSSTALHLAVMQGHVEMVKLLLAVGADATLADE-IGNTPLHVAAFKNELACAEALLGS--GKVDVDARAEHILTALNMAVMQGHVEMVKLLLAVGADATLADEAGQAPLNVAAGNNELACAAALLIYGKVNVDARAEHSGTALNMAVIQGHVEMVKLLLAVGADATLADEIGNTPLHNAAINNELACAEALLG--SGKGDVDARAEHILTALNMAVIQGHVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEAL 939
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IPC4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IPC4_9HYME) HSP 1 Score: 81.3 bits (199), Expect = 4.870e-12 Identity = 93/336 (27.68%), Postives = 137/336 (40.77%), Query Frame = 2 Query: 92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFT-KDGATPIVMAAQGSGVAGHPELEEGGA-----------------------AKCIQHLLDAGADQT-------LRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWR--GKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAER-LIAAGASLEANDLTGKTPYLTAKIQNASACLEFLREKHGRPTPEEDSFDFWDA 997 V+ D+ G+ H A G D AKK L+ G DP K G +P+ +A + + L GA K + +L D+ RD+ G PLH A++ G ++E LL AN K G T + L L ++ +++ +DA D+ G TPL A+ G+ ++VERLL GADP+L ++ G +PL A R G E A+ DT V ++ + G TPL+ A + H R L+ GA + GKTP +N + L L F+ WDA Sbjct: 147 VNYTDESGYTHFHAACKCGLEDVAKKFLDRGQDPSCVVPKTGDSPLHLALKNNKKEVSKLLLRNGANLISANSKGKTPLHLICNLYVNNGKELAEMLFKFCDEKRLPVKIDARDDE-GNTPLHAAIFSGSIDLVEVLLRRGANPTLANDK---GKTPLHVICPRNGNVGLSKLFELNDELQLRVPIDARDNEGSTPLHLATSCGNEELVERLLRRGADPTLANAEGRTPLHYVAERSRGVERFFRAIEDTWHTVQ-IDARDSEGDTPLLLALKGGHDVQNVRGLLRRGADPSLANKDGKTPLHVICQRNENRVLLRL------------FFEIWDA 465
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5I8N0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8N0_9HYME) HSP 1 Score: 74.3 bits (181), Expect = 4.430e-10 Identity = 86/307 (28.01%), Postives = 137/307 (44.63%), Query Frame = 2 Query: 107 DRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAG---ADQTLRD--EAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVK---MDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSG---VATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP-YLTAKIQNASACLEFLRE--KHGRPTPEEDSFD 985 + G LHVA+ + + LL+ GA+P G TP + Q G +L A K +Q + D G + + D + +G PLH+AVYR ++E LL E+ N ++EG+T D + +L + C K + V+ D G TPL+ A H ++E LL GADP+L +S G++PL R ++ L + A + +LG L FA ++H ++ E L+ GA + G T ++ AK ++ + +E L E K P D+ D Sbjct: 179 ETGDTPLHVALYSEKKEVFELLLKKGANPNVANIKGLTPFHVICQQYYANG--DL----ARKFLQAIYDIGLKLSSSFIIDAPDPLGQTPLHMAVYRRRKVLVELLL---NVEIDPNLTDAEGSTALHIVCKSI-DEDYKLTEMLFKGCDDKHRLLQVNTQDKEGDTPLIWAVQRQHRKLMEFLLRRGADPTLANSRGLTPLRIVCIRKDDESATILFEHSQDHYKSALVHTRDSLGQLSLNFALDKSHPTLLELLLKHGADPNSACADGWTSLHVIAKRRDLAPMMEKLFEPSKPNYKPPRVDARD 475
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A7S0SR91_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SR91_9CHLO) HSP 1 Score: 69.3 bits (168), Expect = 6.100e-10 Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2 Query: 578 RTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGA 856 RTPL A ++G+ V+ LL GADP+ +D+ SPL AAA +G+ D + AL+ G L++ LG TPL A Q HK + L++AGA Sbjct: 7 RTPLWAACYHGNTGAVQVLLKVGADPNAQDATFASPLVAAASKGRNDTVSALILAAGGKLDLDLTEMLGCTPLWAAAQGGHKDVVFTLMSAGA 99
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IS62_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IS62_9HYME) HSP 1 Score: 73.9 bits (180), Expect = 7.440e-10 Identity = 78/295 (26.44%), Postives = 120/295 (40.68%), Query Frame = 2 Query: 92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEA---VGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWR--GKEDCLGALLDT---DSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP--YLTAKIQNASACLEFLRE 946 +D + RG AL +A+ + + LL GADP G+TP+ G E + + Q D G +T++ +A G PLH+A+ +++ LL +A+ S D + ++ V+A D+SG TPL A G E LL A+P + G +PL R G+ D + AL + ++ NLG TPL A H+ +AE L+ GA A D G TP Y+ + ++ + LE L E Sbjct: 243 IDAKNKRGHTALQLAIGRRLKNVLELLLRRGADPNLAAATGSTPLHYIC----ARGFDEFDVALMQRYFQVCDDIGKTRTVQIDARDNEGRTPLHLAMLNYTWVMVKTLLERGADPTSADKHKS--TPLHNICKTHSGDGFIRKFFKSNDSEGKRVQVNAEDESGDTPLHLALRIGSKATCEYLLRRDANPDAANKKGWTPLHVVCGRRVGRNDLVNALFEVGCEQDKRKRVDARDNLGRTPLHLALARGHRRLAESLLVKGADPVAADAAGSTPLHYVCDREEDDAGSLELLFE 531
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IRR4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IRR4_9HYME) HSP 1 Score: 72.8 bits (177), Expect = 2.050e-9 Identity = 78/274 (28.47%), Postives = 117/274 (42.70%), Query Frame = 2 Query: 92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAV---GTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDS-APEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGA----LLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKT 889 +D D G LH+A+ G + LL GADP +G T + + + G ++ A K IQ D T+R +A+ G PLH+A+ ++E LL N ++EG T D E + ++ +KM +DA D GRTPL A YG + E LL GA+P+L +S G++ L A R +D L + + + LG TPL A ++ + + E L+ GA D G T Sbjct: 687 IDALDKLGQTPLHLALGTGKKKMVECLLRNGADPNIADAEGLTSLQL------ICG-TTYDDNSAEKFIQICDDM--QLTMRIDALDKLGRTPLHLALRNEKHKMVECLLRNG---TDPNIADAEGLTSLHLIALRGIDDDMMEWFLEIGDNMQLKMQIDALDKLGRTPLYTALAYGRRKIAETLLRRGANPNLANSEGLTYLHFIALRKIDDDLVEKFIKMCSDIQQTVQVNALNKLGRTPLHLALRKGKQKMVESLLRNGADPNIADEKGYT 948
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5HY31_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HY31_9HYME) HSP 1 Score: 71.6 bits (174), Expect = 3.520e-9 Identity = 84/309 (27.18%), Postives = 132/309 (42.72%), Query Frame = 2 Query: 2 TMQRLIQASLEGDVGRVTALVDNAVNPRELVDKGDDRGFR--ALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAV--------GTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXD-SAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYG-HADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP 892 T+ R+ + + ++ R+ + + + N +D D G LH+A+ G A LL+ GAD +G TP+ + + V H + L A DQ R+EAV G PLHVA+ + LL G G + N G T D E L + ++ V+ +DA D+ G TPL ++ G + E LLA GADPSL ++ G +PL + + LL+ + +++ G T L A + +H+ AE L+ GA A + G+TP Sbjct: 252 TLYRIFEKFSDVNLPRIVSEMIDKPNQPMPIDTRDKWGQHDTLLHLALRNGKKMTAALLLKRGADANLPNAEGETPLHIVCHRNAV--H-----------LAELFFASMDQ--RNEAVLLDAQNNRGDTPLHVALRHSTGRRMAELLLGKG--AVSTLVNEAGETLLHIVCKAARDVEMAEMLFRIYDERRVQAPLDARDNWGNTPLHNLAYAGRNVATCELLLARGADPSLANNVGRTPLHITCDGQDIELVRTLLNHER--VRVDVPDQEGNTALHLALERDHREAAESLLRRGADPNAANANGETP 541
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5I0V7_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0V7_9HYME) HSP 1 Score: 71.6 bits (174), Expect = 4.330e-9 Identity = 76/289 (26.30%), Postives = 118/289 (40.83%), Query Frame = 2 Query: 38 DVGRVTALVDNAVNPRELVDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAP-----EALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALL---------DTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASL 862 D+ + V R +D D+RG+ LH A++ + LL GADP +DG +P+ + + E+++ +AK + + RD+ G PLH A + +++ LL N N++G T D+ + E+ K+ VDA + G TPL A + G LL+ GADP+L + G +PL A R E GA + + D V L+ G TPL +A SI + L+ GA L Sbjct: 675 DLAEIFCDASEKVGQRLRIDAQDERGWTPLHFALIRRNSRLVELLLRRGADPNLADEDGTSPLHLIS---------EMDDPDSAKILFEICGELVKVDARDK-FGCAPLHAAAFHSDAELMQLLLRNG---ADPNPANADGTTPLHLVNCIDDDADAAHFWRSFFEISEEEMRRKVQVDARNARGWTPLHLALYSGSEAATRLLLSRGADPNLATARGETPLHVACRR-SEFHRGAAMARSFLRISEEVDRPVE-LDARDRKGRTPLQWAVANLEPSIVDLLLERGADL 948 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17188.1 >prot_C-linearis_contig99.17188.1 ID=prot_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp MQRLIQASLEGDVGRVTALVDNAVNPRELVDKGDDRGFRALHVAVMMGAPback to top mRNA from alignment at C-linearis_contig99:448450..451699+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17188.1 ID=mRNA_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3250bp|location=Sequence derived from alignment at C-linearis_contig99:448450..451699+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:448450..451699+ >mRNA_C-linearis_contig99.17188.1 ID=mRNA_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at C-linearis_contig99:448450..451699+ (Chordaria linearis ClinC8C monoicous)back to top |