mRNA_C-linearis_contig99.17186.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI) HSP 1 Score: 313 bits (801), Expect = 2.070e-90 Identity = 272/383 (71.02%), Postives = 283/383 (73.89%), Query Frame = 2 Query: 305 MADSGTG-TMPSEDMPRLGPTWSRGGGMFKPPKRPEGHPEGEDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARKAPPVFGHASRGGLEALASATTQRGFAPRDGSGGLSGGTPAVEAGAAGGVGGVRIAAGPXXXXXXXXXXX----WRERERAASMDKRKVQRFSPQDLVALRRAPTRPLGKMPILGADISVIVSEEPLEPVTAIPADEEAISKASSKSIKSDKIPLSFLIWAAAAERQPMRGRRSRWGSGEDGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRESEDDLWDDVGGXXXXXXXXXXXXXXXXDAGGGLHGVEGMDLLSMAQAADKFQEQMDSMARRMEGVELHEQ 1438
MADSGT M EDMPRLGPTWSRGGGMFKPPKRPEGH EGE+G XXXXXXXXXXXX +RKAPPVFGHA+RGGLEALASATTQRGFAPRDGSGGLSGGT AVE G GVGGVRIAAGPXXXXXXXX W ERERAAS+DKRKVQRFSP++L+ALRRAPTRPLGKMP+LG DIS+IVSEEPLEPVTA PAD+EAIS+ IWAAAAERQPMRGRRSRWG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D GGLHGVEGMDLLSMAQ ADKFQEQMDSM RRMEGVELHEQ
Sbjct: 1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEG-------VGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETG---GVGGVRIAAGPXXXXXXXXGLGPPGRW-ERERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISR----------------IWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-----------------------AADGSGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQ 333
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.730e-63 Identity = 156/255 (61.18%), Postives = 167/255 (65.49%), Query Frame = 2 Query: 305 MADSGTG-TMPSEDMPRLGPTWSRGGGMFKPPKRPEGHPEG---------------------------EDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA-----RKAPPVFGHASRGGLEALASATTQRGFAPRDGSGGLSGGTPAVEAGAAGGVGGVRIAAGPXXXXXXXXXXX----WRERERAASMDKRKVQRFSPQDLVALRRAPTRPLGKMPILGADISVIVSEEPLEPVTAIPADEEAISK 958
MADSGT M EDMPRLGPTWSRGGGMFKPPKRPEGH EG + G SA RKAPPVFGHA+RGGLEALASATTQRGFAPRDGSGGLSGGT AVE G GVGGVRIAAGPXXXXXXXX W +RERAAS+DKRKVQRFSP++L+ALRRAPTRPLGKMP+LG DIS+IVSEEPLEPVTA PAD+EAIS+
Sbjct: 1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHLEGVGHRTTLGEDWRVLGIGVSLNCWGVFRDKGLLLFAARDQEEGVGTGVPSPGTGAGGGRASTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETG---GVGGVRIAAGPXXXXXXXXGLGPPGRW-DRERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISR 251
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE) HSP 1 Score: 206 bits (523), Expect = 1.970e-51 Identity = 324/481 (67.36%), Postives = 332/481 (69.02%), Query Frame = 1 Query: 4204 APAQDPTRPPSPLVGPSGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKMKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKKSLAEIQAEEGKRQAQNA-VRTPAQAAALAXXXXXXXXXXXXXXXXXXXXAVPWGKDGAGGKKMSLLEIQQQEARMAKLQQQQDQAAVTNGERSHLIGTRQVERCRSIDAFVYRVRHSAWRCFLFSAYTQGVVLSAPPGASAXXXXXXXXXXXXXXXXXXXNWQQMRAQAPTVKGTSAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAFGGSGMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGRGXXXXXXXXXXXXX--------GASTSVKPAVVAQ-AGDGWAAAGKKGKKGKSKH 5616
APA DPTRPPSPLVGP+GEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKK+KQE XXXXXXXXXXXXXX PKKSLAEIQAEEGKRQAQ A + TPAQA +LA XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAFGGSGMSPAMASWA QQLKKM+GKDDLTLLEFCMSL+DASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGRGXXXXXXXXXXXXX GAS SVKP V+Q GDGWA+AGKKGKKGK KH
Sbjct: 257 APAADPTRPPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVATV-PKKSLAEIQAEEGKRQAQEAALHTPAQAQSLAEEHRXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAFGGSGMSPAMASWASQQLKKMSGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGRGXXXXXXXXXXXXXXXLVGGFGGASVSVKPVAVSQPVGDGWASAGKKGKKGK-KH 677
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A835ZDV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.840e-19 Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 Query: 5278 GMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQ 5469
GM P MA+WA +LKK+ G +D+TLL+FCMS +DASE+R+ LAAYLGSTP+VSSFAT FLQRKQ
Sbjct: 2 GMPPDMAAWAQAELKKLGGGEDITLLDFCMSSTDASEVREVLAAYLGSTPQVSSFATNFLQRKQ 65
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A7S2LIW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.020e-16 Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 5266 FGGSG-MSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFL 5457
FG +G M+P M W Q++K+NG DDLTL+ FCM+L+D+ EIRQYL+AYLGSTP+V++FATEF+
Sbjct: 102 FGANGQMTPTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQVNNFATEFI 166
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A8K1C681_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C681_PYTOL) HSP 1 Score: 96.7 bits (239), Expect = 5.550e-16 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 5266 FGGSGMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGRG 5481
FGGS +S SW +QLK +NG DDLTL+E+C +L D EIR+YLAAYLGSTP+VS+FATEF+QRK+ G
Sbjct: 927 FGGSSVSSDFMSWCAKQLKSINGSDDLTLVEYCATLEDPGEIREYLAAYLGSTPKVSAFATEFIQRKKSAPG 998
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A7S2EIP2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIP2_TRICV) HSP 1 Score: 88.2 bits (217), Expect = 6.390e-16 Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 5266 FGGSG-MSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRK 5466
FG G MSPA+ +W +Q++K++G +DLTL+ FCM+LSD EIRQYL AYLG+TP+V++FA EF+ RK
Sbjct: 79 FGAGGKMSPALENWCKEQMRKISGSEDLTLVSFCMTLSDPVEIRQYLTAYLGTTPQVNNFAAEFINRK 146
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A7S1CZA9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZA9_CYCTE) HSP 1 Score: 92.0 bits (227), Expect = 6.510e-16 Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1 Query: 5272 GSGMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGR 5478
G+ MSPA+ SW +Q+ K+NG DDLTL+ FCM+L+D EIRQYL AYLGSTP+V +FATEF+ ++ G+
Sbjct: 225 GTTMSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQVGNFATEFISKRGLGK 293
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A7S1H1V4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1V4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.080e-15 Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 Query: 5272 GSGMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 5475
G+ MS + SW Q++K+NG DDLTL+ FCM+L+D +EI+QYL AYLGSTP+V++FATEF+ ++ G
Sbjct: 116 GASMSTTLESWCKDQMRKLNGSDDLTLVSFCMTLNDPAEIKQYLTAYLGSTPQVNNFATEFINKRGLG 183
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Match: A0A7S0CDA8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDA8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.990e-15 Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 5272 GSGMSPAMASWALQQLKKMNGKDDLTLLEFCMSLSDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGRG 5481
G+ MSP++ +W QL+K+ G DDLTL+ FCM+L D EI+QYLAAYLGSTP+V+SFATEF+ RK G+G
Sbjct: 840 GARMSPSLENWCKDQLRKLAGGDDLTLVSFCMTLKDPEEIQQYLAAYLGSTPQVTSFATEFINRKNGGKG 909 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17186.1 >prot_C-linearis_contig99.17186.1 ID=prot_C-linearis_contig99.17186.1|Name=mRNA_C-linearis_contig99.17186.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1265bp MADSGTGTMPSEDMPRLGPTWSRGGGMFKPPKRPEGHPEGEDGNGGGTGAback to top mRNA from alignment at C-linearis_contig99:421169..444330+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17186.1 ID=mRNA_C-linearis_contig99.17186.1|Name=mRNA_C-linearis_contig99.17186.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=23162bp|location=Sequence derived from alignment at C-linearis_contig99:421169..444330+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:421169..444330+ >mRNA_C-linearis_contig99.17186.1 ID=mRNA_C-linearis_contig99.17186.1|Name=mRNA_C-linearis_contig99.17186.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7590bp|location=Sequence derived from alignment at C-linearis_contig99:421169..444330+ (Chordaria linearis ClinC8C monoicous)back to top |