mRNA_C-linearis_contig99.17180.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI) HSP 1 Score: 207 bits (527), Expect = 3.520e-65 Identity = 108/125 (86.40%), Postives = 117/125 (93.60%), Query Frame = 1 Query: 1 LPEMPVLELVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 +PE+ +ELVTVGEL+GVPRSTR RLTIEQVNAAV +IQ+A ERRHAF+SKPRKKMSEKQR RLEELL QEVPAHGG PFI+EPDLRALP+FKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV Sbjct: 1 MPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 125
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE) HSP 1 Score: 205 bits (521), Expect = 4.220e-61 Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 1 Query: 1 LPEMPVLELVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 +P++ +ELVTVGEL GVPRSTR RLTIEQVNAAV +IQ+A ERRHAF+SKPRKKMSEKQR RLEELL QEVPAHGG PFI+EPDLRALP+FKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV Sbjct: 239 MPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 363
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A835YPY4_9STRA (C18orf24 protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY4_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.460e-23 Identity = 50/123 (40.65%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 10 MPVLELVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFK-KGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 MP ++LVT EL+ +P++TR RL ++ VNAA+ E+Q ++ +++P+ K++EK R R E+ E P H G F++E ++R+ A KGE TA+ ++ +LR+LKR + +R G+MTYVV Sbjct: 1 MPCIQLVTSAELQALPKTTRGRLQLDHVNAAITELQAVLTTKYTLLARPKSKLNEKLRRRYEQYAAAEAPEHEGAHFLTESEMRSCAALGGKGEATARLMLNSLRSLKRFRPLRANGVMTYVV 123
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7K6LCH4_9CORV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Falcunculus frontatus TaxID=254539 RepID=A0A7K6LCH4_9CORV) HSP 1 Score: 70.9 bits (172), Expect = 8.980e-12 Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T+ E E VP + RLT +Q+NA V E+ +A ++ + +P K MS RN ++ ++QE A G FI E D++A K + ++++ LR+ +R++ +RG+G++ YV+ Sbjct: 31 LITMEEFESVPAYMKGRLTYDQINAVVQEMNKAVAAKYKIMYQPLKNMSIPDRNLYDKFMEQETNATRGLFFIVEADIKAFTQLK-ADKRFHSILSILRHCQRVREIRGSGLVRYVI 146
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A852JT92_SPIPA (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Spizella passerina TaxID=40210 RepID=A0A852JT92_SPIPA) HSP 1 Score: 70.9 bits (172), Expect = 5.900e-11 Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 28 VTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 +TV E E VP + R+T +Q+NA V EI +A E ++ + +P K MS RN +++E G FI E D++A K + ++++ LR+L+R++ +RG+G++ YV+ Sbjct: 140 ITVEEFEKVPAYLKGRITYDQINAVVQEINKAVEGKYKILYQPLKSMSAPVRNLYHRFIEEETKDTKGSFFIVEEDIKAFTQLKL-DKRFHSIVSILRHLQRVREIRGSGLIRYVI 254
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7L0L6I0_9SYLV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Sylvietta virens TaxID=208069 RepID=A0A7L0L6I0_9SYLV) HSP 1 Score: 67.0 bits (162), Expect = 2.410e-10 Identity = 37/117 (31.62%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T E E VPR + R+T +Q+NA V ++ +A ++ + +P K MS RN +++E G FI E D++ K + ++++ LR+L+R++ VRG+G++ YV+ Sbjct: 31 LITTEEYESVPRYLKGRITYDQINAVVQQMNKAVVDKYKIVYQPLKSMSASVRNLYRRFVEEETKNTKGVFFIVEADIKEFTELKM-DKRFHSILSILRHLRRVREVRGSGLIRYVI 146
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7K7WXV1_9PASS (Spindle and kinetochore-associated protein 1 (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K7WXV1_9PASS) HSP 1 Score: 66.2 bits (160), Expect = 4.650e-10 Identity = 37/117 (31.62%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T E E VP + RLT +Q+NA V E+ +A ++ + +P K MS RN + +++E G+ FI E D++ K + ++++ LR+ +R++ VRG+G++ YV+ Sbjct: 31 LITTEEFESVPAYMKGRLTYDQINAVVQEMNKAMVAKYKILYQPLKSMSVPVRNLYDRFMEEETKDTRGQFFIVEADIKEFTQLKL-DKRFHSILSILRHCQRVREVRGSGLVRYVI 146
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7K6CG84_PTIVI (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Ptilonorhynchus violaceus TaxID=28724 RepID=A0A7K6CG84_PTIVI) HSP 1 Score: 68.2 bits (165), Expect = 5.200e-10 Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T E E VP + RLT +Q+NA V EI +A ++ + +P K MS RN ++ E GE FI E D++ K + ++++ LR+ +R++ VRG+G++ Y++ Sbjct: 135 LITTEEFESVPAYMKGRLTYDQINAVVQEINKAVVSKYKILHQPLKSMSVPVRNLYHRFMEDETKGTEGEFFIVEADMKEFTQMKM-DKRFHSILSILRHCQRVREVRGSGLVRYII 250
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7L2VD82_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2VD82_9AVES) HSP 1 Score: 65.9 bits (159), Expect = 6.310e-10 Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T E E VP + RL+ EQ+NA V E+ +A ++ + +P K MS RN L++E GE FI E D+R K + +++ LR+ +RL+ VRG+ ++ YV+ Sbjct: 30 LITAEEFENVPAYMKGRLSYEQINAVVQELNKAVVGKYKILHQPLKSMSAPVRNLYHRFLEEETKDTKGEFFIVEADIREFTQLKV-DKRFHSILNILRHCQRLREVRGSRLVRYVI 145
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Match: A0A7L4DWQ0_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=65 Tax=Aves TaxID=8782 RepID=A0A7L4DWQ0_9AVES) HSP 1 Score: 67.4 bits (163), Expect = 9.790e-10 Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 25 LVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRKKMSEKQRNRLEELLQQEVPAHGGEPFISEPDLRALPAFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 375 L+T E E VP + RLT EQ+NA V E+ +A ++ + +P K MS RN L++E GE FI E D+R K + +++ LR+ +RL+ VRG+ ++ YV+ Sbjct: 135 LITAEEFESVPAYMKGRLTYEQINAVVQELNKAVVGKYKILHQPLKSMSAPVRNLYHRFLEEETKDTKGEFFIVEADIREFTQLKV-DKRFHSILNILRHCQRLREVRGSRLVRYVI 250 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17180.1 >prot_C-linearis_contig99.17180.1 ID=prot_C-linearis_contig99.17180.1|Name=mRNA_C-linearis_contig99.17180.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp MPVLELVTVGELEGVPRSTRARLTIEQVNAAVAEIQRAGERRHAFISKPRback to top mRNA from alignment at C-linearis_contig99:386659..388443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17180.1 ID=mRNA_C-linearis_contig99.17180.1|Name=mRNA_C-linearis_contig99.17180.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at C-linearis_contig99:386659..388443- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:386659..388443- >mRNA_C-linearis_contig99.17180.1 ID=mRNA_C-linearis_contig99.17180.1|Name=mRNA_C-linearis_contig99.17180.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig99:386659..388443- (Chordaria linearis ClinC8C monoicous)back to top |