mRNA_C-linearis_contig99.17176.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: D7G7T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T9_ECTSI) HSP 1 Score: 540 bits (1391), Expect = 1.760e-184 Identity = 341/583 (58.49%), Postives = 388/583 (66.55%), Query Frame = 1 Query: 52 EISKRLQEGWTLLNDHCPMPSCGTPLLKDHKKEIYCAKCQMYCISADKAKSLGIPDGGASAPAAAGDG-----------------AVPEQXXXXXXXXXXXXXXXXXRQSRAAAEAAMGEKLLLGWTMLAQECPTAGCCFPLMRDRSRNTKCVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXSAHSNGATEEPEPVISEEEFAAVRKKRDALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCDTRMR-EGEAGGLVVESTEASGNSTPVGVSLKRDSSGERNRSSAIRSLPPRITQSPPPRSAPAPVAFVFRFPNHPQVESEYELAEKARLRKQAAREQSSGGGAASATLAQRLLQGWAMLSTICPEAGCHNPLMRDRNGKEQCVGCSSASVEATAAAAPTPRHEA---TIPVQAAGDFAGEMETE--DAEDQALLDDGAGRMYAERRLEELLAASAGGAA-AETGRAVKSEAEDDAAVDQLRVQSQALDTLYRALDLAQQRLRACSSSL---GSLGVDETMRQADLIAKLAAATRAVSELPS 1719
EISKRLQEGWTLLN HCPMP+CGTPLL+DHKK++YCAKC+MYCI+ ++AKSLG P ++PA AG+G AV +QSRAAAEAAMGEKLL GWTMLA+EC TAGCCFPLMRDR R T+CVAC GN AA DD + QF DP + AAPASTV A S+ A EPV+SEE+FAAVRKKRDALS+SLGRYMLQGWSL D+ CP EGCEPGTPLLK+RST +CAGCDTR EG GGLV ES+ ASG + LKRDSSGER+R PPR+ + P P P + + P +VESEYE+AE+ARLRKQAAREQS G +SATLAQRLLQGWAMLST CP CHNPLMRDR G+EQCV CS S A A T A T PVQAAGDFAGE ETE + ED+A+L DGAGR+Y ERR+ E+LAA A AA AET RA A D +D RV+ QALDTLYRALDL+QQRLRA S S+ VDE+MRQADLIAKLA A RAV +LPS
Sbjct: 11 EISKRLQEGWTLLNQHCPMPNCGTPLLRDHKKKVYCAKCKMYCITPEEAKSLGSPT--CASPAGAGEGMATKSQDALGSDAATTGAVRGLSRGQDRQQPRAAPGPTKQQSRAAAEAAMGEKLLQGWTMLAEECETAGCCFPLMRDRGRVTRCVACDGNASAAAKDGL-----------DDRVAAGQFEDPTSAAAPASTVSAPKPPSDSSSITAAR--TEPVMSEEQFAAVRKKRDALSASLGRYMLQGWSLSDKTCPREGCEPGTPLLKDRSTGVFYCAGCDTRGTCEGGVGGLVDESSTASG--AKARLPLKRDSSGERSRG------PPRVDEDGP--GLPNPGSAKTKTP---EVESEYEVAERARLRKQAAREQSRDG-VSSATLAQRLLQGWAMLSTTCPAPECHNPLMRDRTGREQCVSCSRGSAPAAAGRQGTAAAGAAXXTAPVQAAGDFAGEKETENDEEEDEAMLGDGAGRIYTERRMAEILAAPAAAAAPAETSRATTVRA-DGIPLDPSRVKDQALDTLYRALDLSQQRLRAGFSQSPLESSVDVDESMRQADLIAKLAVAARAVLDLPS 563
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: A0A7S3FSB1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FSB1_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 6.060e-12 Identity = 64/196 (32.65%), Postives = 88/196 (44.90%), Query Frame = 1 Query: 352 MGEKLLLGWTMLAQECPTAGCCFPLMRDRSRNTK--CVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXS---AHSNGATEEPEPVISEEEFAAVRKKRDALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCDTRMREGEAGGLVVESTEASGNSTPV 924
+ E+LL GWTML++ CP GC PLMR R NT+ CV+C T ++ F AEA A+ + + + A A E P P+ + A R+K+ SL +LQGW+L DR CP++GC TPL++NR L C CD VV E G+S+P
Sbjct: 14 LSERLLQGWTMLSESCPRKGCTVPLMRSRD-NTEISCVSCA------------------------TRFSADFQPLEAEALGATGLESERHDPLALSMAAREPAAESPIPLSASP--APARQKKTDTPKSLAEKLLQGWTLTDRYCPVQGCL--TPLVRNREKQ-LMCVECDK---------WVVPENELHGDSSPA 170
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: A0A6G0X910_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X910_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.350e-10 Identity = 53/177 (29.94%), Postives = 74/177 (41.81%), Query Frame = 1 Query: 352 MGEKLLLGWTMLAQECPTAGCCFPLMRDRSRNTK--CVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXSAHSNGATEEPEPVISEEE---------FAAVRKKRDALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCD 849
+ EK+L GWT+LA CP CC PL+ + T+ CV C +PPA+ T P+PV E + + A RK+RDA S+ LG MLQGW+L++++CP C GTP ++NR L+C CD
Sbjct: 9 LAEKMLQGWTLLAVNCPEPHCCTPLVSSKKDKTRVLCVKC---------------------------DKWYSTEPPAQPELPHT-------------------PQPVQQEVKSDANEIDPSYEARRKRRDATSNKLGEKMLQGWALMNQVCPKADC--GTPFVRNRE-GKLYCVTCD 136
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: G7E4D5_MIXOS (Uncharacterized protein n=2 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E4D5_MIXOS) HSP 1 Score: 63.9 bits (154), Expect = 2.760e-7 Identity = 65/189 (34.39%), Postives = 78/189 (41.27%), Query Frame = 1 Query: 712 LSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCDTRMREGE-------AGGLVVESTEASGNSTPVGVS----LKRDSSGERNRSSAIRSLPPRITQSPPPRSAPAPVAFVFRFPNHPQVESEYELAEKARLRKQAAREQSSGGGAASATLAQRLLQGWAMLSTICPEAGCHN-PLM 1242
+SS+LG YMLQGW+L DR+C GC PG PL+ S FCA CD +G A G VV + ST VS L E RS A P T P E E EL + + R QS AS + Q LL+GW ML CP+ C+ PLM
Sbjct: 8 VSSTLGHYMLQGWTLSDRICSKPGC-PGVPLMTKASQQ--FCARCDEPPVDGHSSRPQPIASGSVVPTLAHKRASTSASVSPAPSLPALGDFEDLRSGASTPPTPHSTA-----------------PGQTHDEEEPELVQFSATEIALRRAQSDR---ASEAIGQLLLKGWIMLGDACPDTSCYGVPLM 173
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: A0A1Y1WNQ7_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WNQ7_9FUNG) HSP 1 Score: 62.4 bits (150), Expect = 4.420e-7 Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 1 Query: 352 MGEKLLLGWTMLAQECPTAGCCFPLMRD-RSRNTKCVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXSAHSNGATEEPEPVISEEEFAAVRKKR---DALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCDTR 855
M + +L W MLA++CP GC PLMR+ + +KCV D++ F D E + + S G +EE E I E+ ++++R D S +G+ ML+GW+++D+MCP E C PL+K+R +C C+ R
Sbjct: 11 MSKLMLRRWPMLAEQCPKDGCHAPLMRNPETGESKCVW--------------------------HDAHELFPDELTEE-----EVQDKISETAEASVGESEEVEEPIDTEKERMLKERRAQSDLASELIGKKMLEGWAMMDKMCPNESCR-AVPLVKDRE-EVQYCVICERR 149
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: A0A4P9Y1V0_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y1V0_9FUNG) HSP 1 Score: 58.2 bits (139), Expect = 1.030e-5 Identity = 44/175 (25.14%), Postives = 72/175 (41.14%), Query Frame = 1 Query: 352 MGEKLLLGWTMLAQECPTAGCCF-PLMRDRSRNTKCVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXSAHSNGATEEPEPVISEEEFAAVRKKRDALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGCDTR-MREGE 870
+G+ LL GW +LA+ C C P+M+D T CV C + D + S +++ P T A G +E + +RD +S +G+++LQGW+LLD +CP + C G PL++ + C C + +RE +
Sbjct: 3 VGQHLLQGWVLLAESCEKPSCFLTPMMQDHQGRTLCVLC----------------------QHDEEHGSSIQGEGSKSIP--TPSAALSSQQEIQDKGEDKERRQI-----------QRDMCTSRIGQHLLQGWTLLDTLCPNDECH-GVPLIREPTGKECLCVVCSGKYLREAD 141
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Match: A0A1Y1Y3X0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y3X0_9FUNG) HSP 1 Score: 56.2 bits (134), Expect = 1.330e-5 Identity = 44/169 (26.04%), Postives = 63/169 (37.28%), Query Frame = 1 Query: 352 MGEKLLLGWTMLAQECPTAGCCFPLMRDRSRNTK-CVACGGNGVAAXXXXXXXXXXXXXXREDDTDSNSQFADPPAEAAPASTVIAXXXXXXSAHSNGATEEPEPVISEEEFAAVRKKR---DALSSSLGRYMLQGWSLLDRMCPLEGCEPGTPLLKNRSTSALFCAGC 846
+G LL GW ++ CP C PLMR + + + CV C D Q +P ++ PE S E V KKR S +G +LQGW++L+ +CP E C G PL++N+ L+C C
Sbjct: 11 IGNYLLKGWVLMDAVCPNPSCSVPLMRSKDKKIQFCVLC------------------------DDPERKQTQEPVIQS------------------------PENTNSTVELEEVEKKRAQSQTASKLIGEKLLQGWAMLNDICPNETCY-GVPLIRNKREKHLYCVIC 130 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17176.1 >prot_C-linearis_contig99.17176.1 ID=prot_C-linearis_contig99.17176.1|Name=mRNA_C-linearis_contig99.17176.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=576bp IPTRSAGAAERQTMVSTEISKRLQEGWTLLNDHCPMPSCGTPLLKDHKKEback to top mRNA from alignment at C-linearis_contig99:361496..363920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17176.1 ID=mRNA_C-linearis_contig99.17176.1|Name=mRNA_C-linearis_contig99.17176.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2425bp|location=Sequence derived from alignment at C-linearis_contig99:361496..363920- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:361496..363920- >mRNA_C-linearis_contig99.17176.1 ID=mRNA_C-linearis_contig99.17176.1|Name=mRNA_C-linearis_contig99.17176.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3456bp|location=Sequence derived from alignment at C-linearis_contig99:361496..363920- (Chordaria linearis ClinC8C monoicous)back to top |