mRNA_C-linearis_contig99.17175.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: D7G7U0_ECTSI (Ephrin_rec_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U0_ECTSI) HSP 1 Score: 402 bits (1034), Expect = 9.270e-140 Identity = 218/270 (80.74%), Postives = 242/270 (89.63%), Query Frame = 1 Query: 1 MKSDG-LLRAYLVPATLALAWQAWTT-----PRLFVAATLEQCHLDCAGNTTSELMADTALNGGTWSVWDTQRLVGPTEPAPELNATYPFARAPFPLPFHSFCQLGCSFFFAGSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCANGVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSCVPKWQNFQRDSTPYIGR 792 MK DG LLRA++VP T ALAWQAWTT LFV+ATLEQCHLDCAGNTT+EL+AD ALNGG+WSVWDTQRLVGPTEPA E+NATYP+ARAP PLPFHSFCQLGCS+FFAGSPR T+C CD+FY R+VSVGINDYAEKARLECRDGC+IAVLRC+PGYSCA GVMS C+PGT+RNTSYDMINTC +CP+GTYRAK K GV XXXXXXXXXXXXXXXXXXXXXXXXXXXXYA+EEGTAEC+C+TEDSC+P+WQNFQRDS P+IGR Sbjct: 1 MKPDGGLLRAFVVPTTFALAWQAWTTLTASNSSLFVSATLEQCHLDCAGNTTAELVADAALNGGSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPRNTTCSGLCDDFYVRNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAAGVMSECSPGTYRNTSYDMINTCTQCPKGTYRAKGKGSGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAKEEGTAECSCVTEDSCLPEWQNFQRDSMPHIGR 270
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S1TV74_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV74_9STRA) HSP 1 Score: 135 bits (340), Expect = 4.970e-35 Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 91 AATLEQCHLDCAGNTTSELMADTALNGGTWSVWDTQRLVGPTEPAPELNATYPFARAPFPLPFHSFCQLGCSFFFAGSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCANGVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKAR 591 AA L+ C DC+ D R VGPT P P +P+ AP P P+ FCQ GCS FF P T C A CD Y DV+V ND AE ARLECRDGC++ +LRC+ GY C G M C GT+R+ + + C++CPRG YR+ + R Sbjct: 16 AADLDHCKADCS---------------------DAARPVGPTRP-PNTRG-HPWFPAPNPNPYLQFCQTGCSLFFESYPVLTDCQAECDRIYRYDVTVAYNDQAEVARLECRDGCEMGLLRCQAGYYCTAGSMLQCPIGTYRDVDFAAVEACVDCPRGRYRSDPRGR 159
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A835ZBR7_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR7_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.240e-32 Identity = 90/171 (52.63%), Postives = 114/171 (66.67%), Query Frame = 1 Query: 286 FCQLGCSFFFAGSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSC--ANGVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSCVPKWQNFQRDSTPYIGR 792 FC+ GC++F++ SP SC CDE Y + S ++D+AEKARL+CRDGC I C+PGY C A+G++ C PGT+RN S + C+ CP G YR G+ XXXXXXXXXXXXXXXXXXXXXXXXXXX Y EG A C +T DS P++QN +S P++GR Sbjct: 35 FCEAGCAYFYSSSPTLQSCDVNCDEMYRQRTSFNVSDWAEKARLDCRDGCRIGFRVCQPGYKCEHAHGMVE-CEPGTYRNASDADVTQCIACPAGHYREAPGGAGLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXLYTLVEGQAACANITYDSGNPEFQNLLNESEPFLGR 204
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S3HQK9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQK9_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.940e-30 Identity = 97/214 (45.33%), Postives = 125/214 (58.41%), Query Frame = 1 Query: 199 RLVGPTEPAPELNATYPFARAPFPLPFHSFCQLGCSFFFAGSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCANGVMSVCTPGTHRNTSYDM-------INTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSC---------VPKWQNFQRDSTPYIGR 792 RL GPT+ + +P+A A FP FCQLGC F+ P+ T+C C+ FY ++VG ND AE+A+LEC+DGC+IA+ C+ GY C G+M C GT+R D+ +C +CP G YR+ K + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX G C C+T SC ++ R+S P+IGR Sbjct: 44 RLTGPTKM--QQTKQHPWAMAAFPTKQKGFCQLGCQLFYTEVPKNTTCKRLCNYFYRYKITVGYNDLAEEAKLECQDGCEIALQVCQAGYYCDEGIMLPCPAGTYREPVTDVSILALEKATSCTKCPYGRYRSTNKGKSADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRLCKCITPGSCGSIIDDNVVFSNGVDYYRESIPFIGR 255
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S2CHA6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHA6_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.140e-30 Identity = 98/210 (46.67%), Postives = 126/210 (60.00%), Query Frame = 1 Query: 199 RLVGPTEPAP--------------ELNATYPFARAPFPLPFHSFCQLGCSFFFAGSP------------------RTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCANGVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTE 732 RLVGPT P+ +L +P+AR+P P P+ FCQ+GC++++ ++C ARC+ + D++ G +D AE ARLEC DGC IA LRC+PGYSC NG M+ C PGT+R+ Y + C +CP G YR R +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G A C+C+TE Sbjct: 142 RLVGPTRPSDSDVYLFGLHETIHLDLTRPHPWARSPEPNPYMKFCQIGCTYYYNQEQWGIYPQREVPSDVVENWNTLSACLARCNHTFRYDITTGYSDIAEMARLECWDGCQIANLRCQPGYSCFNGDMNPCKPGTYRHNEYTRVEQCYDCPNGRYRDAVGGREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHSPGQALCDCITE 351
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S0XEG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEG6_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.780e-26 Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 1 Query: 199 RLVGPTEPAPELNATYPFARAPFPLPFHSFCQLGCSFFFAGSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCANGVMSVCTPGTHRNTSYDM-------INTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTED 735 RL GP +P P+ T+P+ A FP +FC+LGC +FF+ +C +C Y + G +D AE A+LEC DGC+IA+ C+ GY C NG M+VC G +R + D+ ++TC+ CP G YRA +K R XXXXXXXXXXXXXXXXXXXXXXXXXXXX EEG+ C C+T + Sbjct: 44 RLFGPIKP-PDTR-THPWKVAQFPSTTTAFCKLGCQYFFSYYSNNNTCINQCKYQYRYQATTGYSDSAELAKLECLDGCNIALSICQAGYYCVNGNMTVCPAGKYRESVSDLSLITLEKVHTCINCPYGRYRALDKGRSANDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGSRYCKCITTE 227
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S1ZTF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZTF7_9STRA) HSP 1 Score: 110 bits (274), Expect = 6.510e-25 Identity = 90/205 (43.90%), Postives = 119/205 (58.05%), Query Frame = 1 Query: 277 FHSFCQLGCSFFFAGSP---RTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCAN-------------------------GVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSC----VPKWQNFQ-RDSTPYIGR 792 ++ FC++GC+ FF+ + C +CD+ Y +++VG ND E +RLECRDGC +A+ RC+PGY C+ G MS C G +R+ SYD I C++CP G +R K + + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX A C C+T DSC +P N + R++ PYIGR Sbjct: 96 YYKFCEVGCTLFFSSISDPMHLSECTHKCDQIYQYNITVGYNDLMEVSRLECRDGCQMALKRCQPGYFCSQVSLLNDDENSTLGPKSHGRDTRYTGGYMSHCPAGKYRDFSYDAIEMCVDCPPGRFREDTKGKSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFCKCITSDSCKKEQLPSPANSEKRETIPYIGR 300
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S1FSZ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSZ0_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.490e-23 Identity = 87/206 (42.23%), Postives = 122/206 (59.22%), Query Frame = 1 Query: 265 FPLPFHSFCQLGCSFFFA---GSPRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSCAN---------------------GVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSC----VPKWQNFQ-RDSTPYIGRQ 795 +P + CQLGC+ FF+ + +SC + CD+ YA +++V ND E RLECRDGC +A++RC+PGY C G M C PG++R+ SY ++TC+ CP G +R + + + XXXXXXXXXXXXXXXXXXXXXXXXXXXX + E G C C+T +C +P + + R++ PY+GR+ Sbjct: 224 YPDQYFRACQLGCTLFFSLRENPKQLSSCLSLCDDKYAYNITVSYNDLMELVRLECRDGCHMALMRCQPGYFCLQPSTTLDDDGKHHLSSTSLPNGGSMHECLPGSYRDVSYHAVDTCVPCPPGRFREETRGLSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFTTEPGRHVCKCITPQACDKEQLPDPADAEKRNTVPYVGRR 429
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: A0A7S2SQ56_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ56_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.330e-18 Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 1 Query: 196 QRLVGPTEPAPELNATYPFA--RAPFPLPFHSFCQLGCSFFFAGS--PRTTSCGARCDEFYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSC----ANGV--------------MSVCTPGTHRNTSYD----------------MINTCLECPRGTYRAKEKAR 591 +R +GPT P+ + Y A + +P + FC+ GC+FF++ P +C RC YA + SVG ND A ARLEC DGCD+A++RC PGYSC G+ M+ C GT R Y+ +++C +CP G YR K + Sbjct: 86 RRPIGPTRPSEPRDHPYFHAVGKDAWPNTYAKFCEAGCTFFYSEPEYPSNITCKQRCSSTYAYEGSVGENDMAMVARLECYDGCDLALMRCRPGYSCDWPSTTGLGAVDAAAGWTRTANMTACPLGTWRGVLYNETSGSQTDEDLYSPGISVDSCRDCPSGRYRDFPKGK 255
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Match: K0QZJ0_THAOC (Ephrin_rec_like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZJ0_THAOC) HSP 1 Score: 93.2 bits (230), Expect = 5.250e-18 Identity = 98/244 (40.16%), Postives = 123/244 (50.41%), Query Frame = 1 Query: 88 VAATLEQCHLDCAGNTTSELMADTALNGGTWSVWDTQRLVGPTEPAPELNATYPFARAPFP--LPFHSFCQLGCSFFF----AGSPRTTS------CGARCDE-FYARDVSVGINDYAEKARLECRDGCDIAVLRCEPGYSC------------ANGVMSVCTPGTHRNTSYDMINTCLECPRGTYRAKEKARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEEEGTAECNCMTEDSCV 744 V AT EQC +DC +D W D P A L YP+ A + +FC+LGC++FF + P S C RC+E F + ND ARLECRDGC +A+ RC+PGY C A G M+ C PGT+R+ Y + C+ CP +R K R XXXXXXXXXXXXXXXXXXXXXXXXXXXX+A + + C C+T D+C Sbjct: 154 VLATEEQCRIDCN--------SDDRTPTRPWHEQD------PLRNALRLTRPYPYHAAADDDERDYPAFCRLGCNYFFVPESSDDPEDESKSTLDQCLERCEEEFEYTSTTPPYNDLVAIARLECRDGCLLALRRCQPGYYCSQVSFRDGNGTYAGGQMTPCPPGTYRDVDYGAVEACVPCPPNHFREDVKGRSASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXFASQPASY-CTCITPDACA 382 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17175.1 >prot_C-linearis_contig99.17175.1 ID=prot_C-linearis_contig99.17175.1|Name=mRNA_C-linearis_contig99.17175.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp MKSDGLLRAYLVPATLALAWQAWTTPRLFVAATLEQCHLDCAGNTTSELMback to top mRNA from alignment at C-linearis_contig99:358880..360447+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17175.1 ID=mRNA_C-linearis_contig99.17175.1|Name=mRNA_C-linearis_contig99.17175.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1568bp|location=Sequence derived from alignment at C-linearis_contig99:358880..360447+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:358880..360447+ >mRNA_C-linearis_contig99.17175.1 ID=mRNA_C-linearis_contig99.17175.1|Name=mRNA_C-linearis_contig99.17175.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at C-linearis_contig99:358880..360447+ (Chordaria linearis ClinC8C monoicous)back to top |