mRNA_C-linearis_contig99.17174.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17174.1 vs. uniprot
Match: D7G7U1_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI) HSP 1 Score: 441 bits (1133), Expect = 4.580e-151 Identity = 214/303 (70.63%), Postives = 246/303 (81.19%), Query Frame = 1 Query: 391 IREISSASDLQRLARVLDHRRINTSCRETFAAALRDGNPAVIDMWLHHGKENKGAYFLEAFRSWGEVPVDT---GYGGGRSPPSLPLHLSCHAGSPEVVSVLLRFMAESYSSEDCKAMVNTRDLNGRTALHLSSWSPRLQCPGKRNSIVRNLLAHDADVRVKDSNGQTALHQACRAADCFAVEILLKGGANPLQEDNRQLTPLETATIRRHRRLLDAVFWKHLSTRRYLRLCAKIAAKATVKRIMNRFIPVCDTCRVRPAETCNAQKRDDFAAWVYKHQRWPKAGEGKWKEVVRPSCVEKKAR 1290
IREIS ASDLQRLARVLDHR+INTSCRETFAAA+RD NPA ++MWLHHGKE+KGAYFL+AFR+WGE G GG RSPPS+PLHLSCHAG+PE+VSVLLRFM ESYS +D AMVN RDLNGRTALHLSSWSPR +CPG RN+IVR LL+H A+V+ +D++G+TALH+ACRAAD FAVE ETAT +RH RLLDA+F K+LSTRRYL LCA++ AK +V RIM RF+P+CDTC+VRPAE CN QKRDDFAAWV+KH RWPKAGEGKW+EV RPSCVEKK R
Sbjct: 2 IREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAYFLDAFRAWGEAAAAGHVGGRGGNRSPPSIPLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVRELLSHGANVKAEDNHGRTALHEACRAADHFAVETXXXXXXXXXXXXXXXXXXXETATAKRHWRLLDALFRKNLSTRRYLHLCARVTAKTSVSRIMRRFVPLCDTCQVRPAEACNTQKRDDFAAWVFKHHRWPKAGEGKWREV-RPSCVEKKPR 303
BLAST of mRNA_C-linearis_contig99.17174.1 vs. uniprot
Match: A0A072PGR9_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PGR9_9EURO) HSP 1 Score: 63.9 bits (154), Expect = 1.270e-7 Identity = 54/178 (30.34%), Postives = 75/178 (42.13%), Query Frame = 1 Query: 496 DGNPAVIDMWLHHGKENKGAYFLEAFRSWGEVPVDTGYGGGRSPPSLPLHLSCHAGSPEVVSVLLRFMAESYSSEDCKAMVNTRDLNGRTALHLSSWS---PRLQC-------PGKRN----SIVRNLLAHDADVRVKDSNGQTALHQACRAADCFAVEILLKGGANPLQEDNRQLTP 987
D NP V D + N+G V V+T PLHL+ A V S+L + E+ V RD G+T LHL+S S P + P R+ + + L+AH ADVR +D G T LH A + AV L++ GA+PL ++ TP
Sbjct: 67 DSNPEVTDWIYSNSGNNQG------------VSVNTDG-------QCPLHLAASASKTGVASLLCKHFPET---------VTRRDHRGQTPLHLASASQIMPTMNSLFKTGTRPSPRSPEGVTCIETLIAHGADVRAQDDQGNTCLHNASAWGNLKAVRALIQAGADPLCKNKAGWTP 216
BLAST of mRNA_C-linearis_contig99.17174.1 vs. uniprot
Match: U1HKI6_ENDPU (Uncharacterized protein n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1HKI6_ENDPU) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-6 Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = 1 Query: 637 PLHLSCHAGSPEVVSVLLRFMAESYSSEDCKAMVNTRDLNGRTALHL------------SSWSPRLQCPGKRNS-IVRNLLAHDADVRVKDSNGQTALHQACRAADCFAVEILLKGGANPLQEDNRQLTP 987
PLHL+ E+V +L + +N + G T LHL S+ ++ +S V +LLAH+ADV +DSNG LH A + AV L++ GA+PLQ +N+ TP
Sbjct: 40 PLHLAASHSQTEIVELLCSHFPST---------INHANNEGATPLHLAIRAHPPSSALTSTQPVKISSKAAEDSSTVESLLAHNADVHARDSNGNGCLHYASTWGNLKAVRALIQAGADPLQRNNQGWTP 160
BLAST of mRNA_C-linearis_contig99.17174.1 vs. uniprot
Match: UPI00201EA8C8 (tyrosine-protein kinase HTK16-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201EA8C8) HSP 1 Score: 56.2 bits (134), Expect = 9.430e-5 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 640 LHLSCHAGSPEVVSVLLRFMAESYSSEDCKAMVNTRDLNGRTALHLSSWSPRLQCPGKRNSIVRNLLAHDADVRVKDSNGQTALHQACRAADCFAVEILLKGGANPLQEDNRQL--TPLETATIRRH 1014
LH + G +VV +L +YS+ C VN ++ G ALH +++ + IV LL ADV++KD+NG TALH+AC A VE+L+K G + E Q PL A +R H
Sbjct: 168 LHRAVLEGKKDVVKRIL-----AYST--CPD-VNAKNKIGSLALHDAAFHGYYE-------IVAQLLDRGADVKIKDTNGHTALHRACVANQPRVVELLIKKGRSLTSERCSQTGWVPLHEAAMRGH 279 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17174.1 >prot_C-linearis_contig99.17174.1 ID=prot_C-linearis_contig99.17174.1|Name=mRNA_C-linearis_contig99.17174.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=436bp MSNDAIASWLRVRQYTTVAGKILNKRLRPSVDESFKPKGNATLASLKSGQback to top mRNA from alignment at C-linearis_contig99:355254..358414- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17174.1 ID=mRNA_C-linearis_contig99.17174.1|Name=mRNA_C-linearis_contig99.17174.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3161bp|location=Sequence derived from alignment at C-linearis_contig99:355254..358414- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:355254..358414- >mRNA_C-linearis_contig99.17174.1 ID=mRNA_C-linearis_contig99.17174.1|Name=mRNA_C-linearis_contig99.17174.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2616bp|location=Sequence derived from alignment at C-linearis_contig99:355254..358414- (Chordaria linearis ClinC8C monoicous)back to top |