mRNA_C-linearis_contig99.17171.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17171.1 vs. uniprot
Match: D7G7U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U6_ECTSI) HSP 1 Score: 481 bits (1238), Expect = 3.110e-160 Identity = 344/640 (53.75%), Postives = 408/640 (63.75%), Query Frame = 1 Query: 64 QDETSDELSSFDVLGGLPSFPATTAHDTFDHDHDASLLHP-ARSSQPP--YLYAPRAAEGIASGTGRSTESGLELDQALERANCDSDEELEAIRGSVRSLRAQRAAVEKLKEKARAEEGTAKALKRKLGEAERRIQELRAQGGRDVVRRLMDEVTELRARLQATSAALQTRENSVAELREAVHHLRLDLRAGQEKTKTQARKLEEQGRESQEQRVTIRRLEEECSRCEERAQVAEKTAEDKCAASGRELASLSALLREANATLDASKGTMQTTLAKQAKKLQAVRKDKESLLTQKGQAKERLQELTSLCERQRSQXXXXXXXXXXVERLASAAKDDTRLAEDQAARLRAELSAADRGRREEDAGATIKLRTATRQAEELTVELARVKLEAEDKARQLLRHRDEMSSFRQDVNKLREATAQQGDIRQALRDRDGTVRGLRQRLELERRERGQWGQARKQLLIEFCEEENKLRSTLQPAQQQRRXXXXXXXXXXXXXXXXXXXXXXXXXQPVFDQGPPARSERDPVEKNETLSRQSTMYSLHSYATSNGEAGDDGAEGLAFRNRSNSRVARRQEEKGGRGSGDGSLFDLARTTRAVVGNGTFDA-VGTVGTDRFGVRDVGGHEAEARDEFGMRPGQQLSQQA 1971 ++ S + SFDVLG LP+ P TT + SL+ R+ +P + YA EGIASGTG STESGLE Q ER + DSD+ELEAIRGSVRSLRAQRAAVEKLKEKAR RAQGGRDVVRRLMDEVTELRARL+ATS A QTRENSVA+LREAV L LDLRAGQEK + Q+RKLE+Q CAASGRELASLSALLREANATLDASKG+MQ T+AKQA+KL+A RK+KESLL +KGQ +ER++ELTS+CERQRS+ +ERLASAAK +TRLA++QAA+L+ ELSAAD+ RREEDAGATIKLRTA RQ EEL E+ VK EA +KARQL+RHRDEMS+FR+DV+KLREA QQGD+RQA+RDRD T+R LR++LELERRERGQWGQARKQLL+EFCEEENKLRSTLQPAQ Q Q + + PP S+R + +++ LSR +T+ ++ + S + + G A VAR +E+ G L DLA G G D GT+G G + A DEF MRPGQQLSQQA Sbjct: 2 ENTNSSQDLSFDVLGVLPTVPTTTPL-------EPSLIGSHTRTGRPQSHHSYA-LGGEGIASGTGGSTESGLE--QGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXXRAQGGRDVVRRLMDEVTELRARLKATSTAFQTRENSVADLREAVQTLTLDLRAGQEKARAQSRKLEQQ-----------------------------------CAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKEKESLLFEKGQTQERVKELTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQAAKLKTELSAADKRRREEDAGATIKLRTAARQVEELRSEVVLVKSEAAEKARQLVRHRDEMSAFREDVSKLREAAVQQGDMRQAVRDRDETIRDLRRQLELERRERGQWGQARKQLLLEFCEEENKLRSTLQPAQHQE----------------PRSTRRQGRKQAILEHAPPTGSDRR-LTRHKPLSRHATIRNIRTNGDSRRSSANSSLRGEAC-------VAREEEKVFGDSEAGEVLLDLA-------GGGVRDGGTGTLG----GYEEGNSSRTMASDEFEMRPGQQLSQQA 561 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17171.1 >prot_C-linearis_contig99.17171.1 ID=prot_C-linearis_contig99.17171.1|Name=mRNA_C-linearis_contig99.17171.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=658bp MISSLRCIAPSGSWAMGHERRQDETSDELSSFDVLGGLPSFPATTAHDTFback to top mRNA from alignment at C-linearis_contig99:337885..342956+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17171.1 ID=mRNA_C-linearis_contig99.17171.1|Name=mRNA_C-linearis_contig99.17171.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5072bp|location=Sequence derived from alignment at C-linearis_contig99:337885..342956+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:337885..342956+ >mRNA_C-linearis_contig99.17171.1 ID=mRNA_C-linearis_contig99.17171.1|Name=mRNA_C-linearis_contig99.17171.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3948bp|location=Sequence derived from alignment at C-linearis_contig99:337885..342956+ (Chordaria linearis ClinC8C monoicous)back to top |