mRNA_C-linearis_contig99.17161.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: D7G7V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V4_ECTSI) HSP 1 Score: 339 bits (869), Expect = 9.080e-108 Identity = 173/207 (83.57%), Postives = 184/207 (88.89%), Query Frame = 1 Query: 385 DMSPPCPSHAHAMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
D+ PP P+ A GPEETWALI+ LT+TLV ELEPER++EV+RGLA +A RVT TTDLEMV+PELIHLLG DGKALRALKMVDQGVVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVF+QYVQVYHKRREQSVDDMY Q GADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL
Sbjct: 13 DVLPPAPTQAQ--GPEETWALIARLTSTLVHELEPERMAEVERGLASIADRVTGTTDLEMVVPELIHLLGGDGKALRALKMVDQGVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDMYSQ-----TVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 212
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A6H5L330_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L330_9PHAE) HSP 1 Score: 318 bits (816), Expect = 6.340e-100 Identity = 162/196 (82.65%), Postives = 175/196 (89.29%), Query Frame = 1 Query: 418 AMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
A GPEETWALI+ LT+TLV ELEPE+++EV+RGLA +A+RVT TTDLEMV+PELI LLG D KALRALKMVDQ VVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVF+QYVQVYHKRREQSVDDM + GADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGD+IIL
Sbjct: 24 AQGPEETWALITRLTSTLVHELEPEKMAEVERGLASIAARVTGTTDLEMVVPELIDLLGGDSKALRALKMVDQRVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDM------SQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 213
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S2SSQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSQ3_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.170e-27 Identity = 90/239 (37.66%), Postives = 128/239 (53.56%), Query Frame = 1 Query: 286 VRRIWQRPAAEGSLCKDLPRLARRITIRTRRDEDMSPP-CPSHAHAMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGAD-GKALRALKMVDQGVVLLGVHHMKGSVTRG--LLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILG 990
+R + P E SL KDLPRLA RI I SP C + G EE + + + + L L+P++ +EV+ R+ D ++ EL+ LG D +RALK+V QGVVL + ++ G +LTKDVRS DGW++ +DV Q Q+ H R+EQS+D FG A HFE +FEV AT D ++ +TAA LRV + TM+P+ R +L+ +ILG
Sbjct: 10 LRPAFLAPFTETSLAKDLPRLASRIAIT-------SPTLCLDARGSGGEEERTSRVFQVVSLLSAVLQPDQCTEVEELCHAYDQRLAEGADPQIACTELLGALGGDESPVVRALKLVRQGVVLGAMELLRSQAPEGVDILTKDVRSVDGWRVYIDV-QQAFQIRHVRKEQSLD----MFGDAT------QHFEYEFEVSATLDSALSGVTAAWLRVLHAEYAETMKPDRRAELQ-QILG 229
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A2R5GCW9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCW9_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.630e-24 Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 1 Query: 445 LISHLTTTLVRELEPER--LSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
LI L L+ LEP+ + V + + + VT +DL++V+ ++I +G D K + LK + Q VVL +K +T TKDVRS+DGW+I + + + QV H RREQS+D FG +NH+E ++E+R TFD++M +TAA LRV RL+ S TM + +L++ ++ LI++
Sbjct: 294 LIVDLIVVLLAYLEPDEDVQAAVIEEVREIQASVTEASDLQLVVRQIIEAVGVDSKVTKVLKCIHQNVVLQSTVAIKEKLTMQFPTKDVRSSDGWRITITLSKGFAQVRHTRREQSIDS----FGNI------ENHWEFEWELRMTFDQQMQNMTAAQLRVTRLMLSETMDVGLAARLKATLVDGLIVM 472
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S2DNQ4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNQ4_9STRA) HSP 1 Score: 102 bits (255), Expect = 8.400e-20 Identity = 70/189 (37.04%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 448 ISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKAL-RALKMVDQGVVLL--GVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
+ + L L+P R S+V + D +M ++++ LGAD L R LK QGVVL G K + L+TKDVRSADGWQ+ + V D V + H RREQS+D +G A NHFE FEV TFD ++ ++ A LR+ L + TM+ E+R L S L+IL
Sbjct: 184 VHQVVRALTAILDPTRKELNLEAARMYDSQVQSGMDPQMACADMVNALGADDSPLVRLLKFTTQGVVLAAKGAILDKIGTEQHLMTKDVRSADGWQVAITVIDSVVMIRHVRREQSLD----LWGDAS------NHFEYTFEVACTFDTKLERIFATDLRILDLTLADTMESELRRTLTSAFTTGLLIL 362
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S3V399_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V399_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.530e-17 Identity = 73/231 (31.60%), Postives = 117/231 (50.65%), Query Frame = 1 Query: 286 VRRIWQRPAAEGSLCKDLPRLARRITIRTR---RDEDMSPPCPSHAHA--MGPEETWALISHLTTTLVRELEPERLSE-VQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEM 960
++ ++ R S KDL RL R+++ R + + + P S A G E I L +TL++ E + ++E R L V R + +V E++ L+G D ++ R LK ++Q +VL G MK ++T+ + TKDVR DGW I + + + +VQV H R+E +C + N +++++EVR TFDR M LTAA LR+ L M E+
Sbjct: 79 MKSVFDRNIETLSTYKDLGRLISRLSLLLRIPGQGDVVLNPIKSERTAGLSGGEAEIVAIVSLLSTLLKFFEEKHIAESFVRQLKEVRERYGEVENRHLV-KEMVALIGTDSRSARVLKCINQSIVLQGTFEMKSTLTKTVTTKDVREEDGWLIVVTLAE-FVQVKHTRKE------HCTYATRNEPH---NRWDIEWEVRLTFDRNMEDLTAAQLRITNLHLGDAMDEEV 298
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: L8GWR0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWR0_ACACA) HSP 1 Score: 69.3 bits (168), Expect = 1.390e-8 Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 1 Query: 448 ISHLTTTLVRELEP-ERLSEVQRGLAYVASRVTATT-DLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQL 972
+S L + LEP E +V+ + TA T D+ M++ ++ G + LK + QGV+L +K VT+ +LTKDVR+ DGW++ + + V H RRE S+ G G +N F ++ + F+ +T+L A LR+ L P E + +L
Sbjct: 256 LSSLVCRIAEALEPRETALQVKNSFDFYKKNGTAETMDMGMIMQAILKN-GVGPRTESILKAIHQGVILTTAFEIKHKVTKSILTKDVRTKDGWRVHVHLAPNGAVVTHTRREMSI-------GARGPEP--ENEFVFEWRLSMFFNAALTELEAVKLRLTDLQFGPQTTAENKQKL 422
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S0MTD2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MTD2_9CRYP) HSP 1 Score: 63.2 bits (152), Expect = 6.350e-8 Identity = 43/131 (32.82%), Postives = 62/131 (47.33%), Query Frame = 1 Query: 553 DLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRG--------LLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRV 921
DLE I EL L G +R K+++Q + + +K S L+TKDVRSADGW+I +D+ D + V H RREQS+ G + G + + + + F R+M LT L V
Sbjct: 18 DLEPYIRELFSSLDETGPTIRVFKLINQAALAAAITPLKLSAASRSANLRADMLMTKDVRSADGWRISIDIGDHEICVTHIRREQSLS-------GEASPEG----WSMTWRLAIFFPRDMADLTRTTLEV 137 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17161.1 >prot_C-linearis_contig99.17161.1 ID=prot_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp MSAYGSSYSYQEGRSGVGAGLCGRWPWGGGAHTPDAHPRWTNEDESEAFTback to top mRNA from alignment at C-linearis_contig99:252439..259085- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17161.1 ID=mRNA_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6647bp|location=Sequence derived from alignment at C-linearis_contig99:252439..259085- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:252439..259085- >mRNA_C-linearis_contig99.17161.1 ID=mRNA_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig99:252439..259085- (Chordaria linearis ClinC8C monoicous)back to top |