mRNA_C-linearis_contig99.17158.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: D7G7V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V7_ECTSI) HSP 1 Score: 445 bits (1144), Expect = 3.580e-152 Identity = 214/247 (86.64%), Postives = 224/247 (90.69%), Query Frame = 1 Query: 352 VAGKKRPREDATATQSSISKHHPFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGGVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRSAA 1092 +AGKKRPRE A HHPFPTEYGDHFETPLQAYRDIE LALL+KLL KKRKHLRIWDPYYCAGRTPRLL QLGFPKVEHSNQDFYK+ REK+QPKHDVL+TNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPE+KY FDHPEGTG+ADSPF+GVWYV CGSHTEAVF+G +KRGGVSVLRSLDELSQTGAV T RRLNPRQRKALKKKR AA Sbjct: 88 LAGKKRPRESLAAPH-----HHPFPTEYGDHFETPLQAYRDIEVALALLAKLLDKKRKHLRIWDPYYCAGRTPRLLGQLGFPKVEHSNQDFYKVVREKRQPKHDVLITNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPENKYYFDHPEGTGHADSPFTGVWYVHCGSHTEAVFEGTITQKRGGVSVLRSLDELSQTGAVTTERRLNPRQRKALKKKRMAA 329
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A6U0XTY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XTY6_9STRA) HSP 1 Score: 221 bits (562), Expect = 7.470e-66 Identity = 115/234 (49.15%), Postives = 152/234 (64.96%), Query Frame = 1 Query: 394 QSSISKHHPFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYV--VPESKYSFDHPEGTGYADSPFSGVWYVQC-GSHTEAVFQGATAEKRGGVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRS 1086 +++ ++ HPF TEYGDHFETPL AY+ + L ++K LGKK K LRI+DP+YCAG + LGFP++ H N+DFY+ E + P DVLVTNPPYS DHK+R L +C SGKPW LL+PNYVATK YY G + P PF+V +P S+Y + HPEGTG+ +SPF +W+V E + + + AE G V+ S+ +L Q V RRLNPRQRKA K+R+ Sbjct: 2 EAAEAEAHPFSTEYGDHFETPLIAYKHLRPVLCWIAKRLGKKPKELRIYDPFYCAGAVVGRMASLGFPRLIHRNEDFYRCESEGRVPAFDVLVTNPPYSLDHKERILNFCVTSGKPWALLMPNYVATKQYYTNLTSGGSGAPP-TPFFVAPLPGSRYQYTHPEGTGHDNSPFESMWFVDAMAGKKEVMGELSPAE---GSRVMLSIADLKQARCVRPGRRLNPRQRKAAAKRRA 231
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A8J4APU4_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APU4_9CHLO) HSP 1 Score: 218 bits (555), Expect = 2.710e-63 Identity = 111/238 (46.64%), Postives = 146/238 (61.34%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVF----------------QGATAEKRGG---VSVLRSLDELSQTGAVATARRLNPRQRKALK 1074 PF +Y DHFE+PLQA +DIE L LLS L K + L ++DPY+C G + QLGF H N+DFYK P +D+LVTNPPYS DHK+R LE+C SGKPW LL+PNYVATK Y+ + + PF++ P+++YS++HPEGTG+A+SPF +WY+ G +TE ++ Q A GG VSV R++D L Q AV TARRLNP+QR +K Sbjct: 108 PFRVDYNDHFESPLQAVQDIEPVLQLLSIKLKKSKSSLTVYDPYFCQGGIRQHYEQLGFKNFIHRNRDFYKDVDSGNVPSYDILVTNPPYSSDHKERILEFCLRSGKPWALLLPNYVATKAYFSELLDSVSTPAAQRPFFLTPQARYSYEHPEGTGHAESPFFSIWYIGLGEYTETIYKACKARLEPQSNGSSIQSEAAAGLGGRWRVSVARTVDALKQAKAVPTARRLNPKQRARMK 345
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A2J8ADG8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADG8_9CHLO) HSP 1 Score: 214 bits (544), Expect = 1.690e-61 Identity = 112/245 (45.71%), Postives = 147/245 (60.00%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQ-------------GATAEKRGG-----------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080 PF +Y DHFET +A +DI L LSK L K L ++DP+YCAG LG K H N+DFY ++ P +D+LVTNPPYSGDHK+R LE+C SGKPW LL+PNYVATK Y+ + P PF++ P ++YS+DHPEGTG+ +SPF +WYV G+HTE V+ GA +++GG V++ RS+D L Q AV T +RLNP+QRK LK+K Sbjct: 119 PFAADYNDHFETDFRAVQDILPVLQQLSKRLCKPLSELAVYDPFYCAGGVRAHYAALGITKFIHRNRDFYDDVKKGALPSYDILVTNPPYSGDHKERILEFCLRSGKPWCLLMPNYVATKAYFGQLQDAASTPPLQRPFFLTPHARYSYDHPEGTGHTESPFFSIWYVCLGAHTEGVYGSCRSRLDAAPAAGGAADQRQGGAPAGXXXAAWGVALARSVDALRQAKAVPTGKRLNPQQRKRLKQK 363
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A150GNL1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GNL1_GONPE) HSP 1 Score: 199 bits (507), Expect = 8.960e-58 Identity = 100/210 (47.62%), Postives = 132/210 (62.86%), Query Frame = 1 Query: 472 DIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGG-------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080 D++ L L K L K+ L ++DP++C G + LGF H N+DFYK P +D+LVTNPPYS DHK+R L++C SGKPW LL+PNYVATK Y+ + A P PF++ P +Y++DHPEGTG+A+SPF +WYV GSHTEAV+ A+ G VS+ RS++ L Q AV TA+RLNP+QR LKKK Sbjct: 17 DLQPVLTALCKKLKKRPSQLVVYDPFFCKGGIRKHYEALGFTSFVHENRDFYKDVEAGALPDYDILVTNPPYSEDHKERILDFCLRSGKPWALLLPNYVATKAYFSSLLADTATPPPQRPFFLTPRVRYTYDHPEGTGHAESPFYSIWYVGLGSHTEAVYGSCRAKLDAGGGGGSWDVSLARSVEALRQAKAVPTAKRLNPKQRLRLKKK 226
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL) HSP 1 Score: 202 bits (514), Expect = 9.930e-58 Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 1 Query: 430 EYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAE--KRGGVSVLRSLDELSQTGAVATARRLNPRQRKAL 1071 EYGDHFET QAY+DI L ++L+ + L I+DP+YC G R L LGF V H +DFY + + P+HD+L+TNPPYSGDHK+R LEYC ASGKPW LL+PNY+ATK+YY+ + A EPFY V +Y F HPEGTG+ SPF G W++ G HTE ++Q + + ++ R++D+L Q V A R+NP++RKAL Sbjct: 96 EYGDHFETCDQAYKDITPLLKEAARLMQRDASSLGIYDPFYCDGAVKRHLAALGFHTVHHEKRDFYADVKNGQVPEHDILITNPPYSGDHKERILEYCCASGKPWALLLPNYIATKNYYQSTL----AKHKQEPFYFVSRERYMFYHPEGTGHDTSPFEGFWFLYLGPHTEHLYQWSVQNLPRSSYKALTRTVDDLLQKRLVP-APRMNPKRRKAL 306
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835SR82_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SR82_9CHLO) HSP 1 Score: 201 bits (511), Expect = 6.740e-57 Identity = 107/246 (43.50%), Postives = 138/246 (56.10%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVF-----------QGATAEKRG--------------GVSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080 PF +Y DHFET A DI+ L L K L K L I+DP++C G R GF H +DFY + P +D++VTNPPYS DHK+R L++C SGKPW LL+PNYVATK YY + P PFY+ P ++Y+++HPEGTG+A+SPF +WYV G HTEAV+ GA A V++ RS+D L + AV TA+RLNP+QR LKKK Sbjct: 96 PFEVDYNDHFETSSAAVDDIQPVLTALCKRLKKTPAQLAIYDPFFCKGGIRRHYEARGFTNFIHRKRDFYADVANGQLPAYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYAELIEAAGTPPQQRPFYLTPITRYAYEHPEGTGHAESPFYSIWYVGLGQHTEAVYGACRTRLDLSTSGAAAAASXXXXXXXXXXXXXGWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKK 341
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835Y0N0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0N0_9CHLO) HSP 1 Score: 206 bits (524), Expect = 7.290e-57 Identity = 107/258 (41.47%), Postives = 141/258 (54.65%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRG----------------------------------GVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRSA 1089 PF +Y DHFETP+QA RD++ L L LGK L ++DP++C G R LG+ H +DFY PK+DVLVTNPPYS DHK+R LE+C SGKPW LL+PNYVATK Y+ + + PF++ P ++Y ++HPEGTG+A+SPF +WYV G HTE VFQ A GV + R ++ L GAV TARR NPRQR+ +K++ +A Sbjct: 266 PFEVDYNDHFETPIQAVRDLQPVLTALCGRLGKSPAQLAVYDPFFCQGGIRRHFEALGYTNFIHRKRDFYADVEAGNLPKYDVLVTNPPYSEDHKERILEFCLRSGKPWALLMPNYVATKAYFAELLDATSTPAPQRPFFLTPHTRYEYEHPEGTGHAESPFFSIWYVGLGPHTEPVFQACRARTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWGVDLARGVEHLKAAGAVPTARRPNPRQRRKIKEQMAA 523
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835SNK2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SNK2_CHLIN) HSP 1 Score: 201 bits (510), Expect = 5.050e-56 Identity = 107/246 (43.50%), Postives = 140/246 (56.91%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGG-------------------------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080 PF +Y DHFET A DI+ L L K L K L ++DP++C G R GF H +DFY + P++D++VTNPPYS DHK+R L++C SGKPW LL+PNYVATK YY V P PFY+ P ++Y+++HPEGTG+A+SPF +WYV G+HTEAV+ GA K V++ RS+D L + AV TA+RLNP+QR LKKK Sbjct: 161 PFEVDYNDHFETSAAAVDDIQPVLLALCKRLKKTPAQLAVYDPFFCQGGIRRHYTARGFTNFIHRKRDFYADVESGQLPEYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYSELVDEAGTPPQQRPFYLTPVTRYAYEHPEGTGHAESPFYSIWYVGLGAHTEAVY-GACRTKLDSPGPAAAXXXXXXXXXXXXXXXXSWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKK 405
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A7R9V2F9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V2F9_9CHLO) HSP 1 Score: 195 bits (495), Expect = 6.100e-55 Identity = 100/230 (43.48%), Postives = 142/230 (61.74%), Query Frame = 1 Query: 418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYR--LAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQ--GATAEKRGGVS--VLRSLDELSQTGAVATARRLNPRQRKALKKKRSA 1089 P+PT+Y DHFET +A D+E L L+ LGK + L ++DPYYC G + Q+G ++ H +DFY + P++D+LVTNPPYSGDHK+R L++C SGK W LL+PNYVATK Y+ + L EPF++VP KY + HPEGTG++ SPF +WY+ + T+ V K+G S +LRS+ EL ++ V T +R NP+QRK ++K+ A Sbjct: 82 PYPTDYLDHFETSKEAIADLEPALYRLATHLGKPKSELVVYDPYYCKGTIRQHWEQIGVKRLIHEKRDFYADVKSGSVPEYDILVTNPPYSGDHKERILQFCMESGKAWALLMPNYVATKLYFTSIASTLLQQESFSAEPFFLVPTIKYDYVHPEGTGHSSSPFFSIWYIHMANDTKRVLAWWDKLLSKKGTSSARLLRSVSELQESQCVPTGKRPNPKQRKKMRKEACA 311 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17158.1 >prot_C-linearis_contig99.17158.1 ID=prot_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=332bp MDRNKIDMETGERTTTTKVGREGKEGKAPRKKSRSKKCRDTEHEHPSESDback to top mRNA from alignment at C-linearis_contig99:239905..242714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17158.1 ID=mRNA_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2810bp|location=Sequence derived from alignment at C-linearis_contig99:239905..242714- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:239905..242714- >mRNA_C-linearis_contig99.17158.1 ID=mRNA_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at C-linearis_contig99:239905..242714- (Chordaria linearis ClinC8C monoicous)back to top |