mRNA_C-linearis_contig99.17150.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17150.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE) HSP 1 Score: 419 bits (1076), Expect = 4.730e-130 Identity = 364/605 (60.17%), Postives = 394/605 (65.12%), Query Frame = 1 Query: 328 PQRMPFQVDARRVREASERRVAPGTPIHSLKKRLKRTGTSEAQKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLDAARTKEVSDYLKSQISEANMLMEISGVDAARALLADLRSCTDAARGVGELALYWAARAKLEEDAGEYRAARQLLDEGEAYISMPTQQKVMTKVMAAFEGRMNDREEVEVARLLEDSVGSMSLNDSATNSNSPASSAPFRYDPNDVSMGDDDNSGSPRSAIKNLNFSKIAREGDSSDLGAGSAXXXXXXXXXXXXXXXXXXXXXSAFSPDWMR-----------EAAAAGEGESEGAT-SGGGVASMSGVIYSDDESDLSVVSDIDEGVIARANAFAAEEEARKARMEAEAMEAEGAEESRTAVDNXXXXXXXXXXXXXXXXXXXXAPKEGQGNLDPARHGNEERESSHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPHPKPHVKRTTPKRGNKKASQGLSPGSFIAQVEATGKDGKRTLTPVRRSRRISGASTEATPAYLR 2106
PQR PFQVD R +++ASERRV PGTPIHSLKKRLKRT + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGH+NGVSRSLD+ARTKEVSDYLKSQISEANML+EI+GVDAAR LL DL RGVGELALYWAARAKLEEDAG Y AR+LLD+GEAYISMPTQQKVM KV+AAFEGRMN R E ++ RLLEDSV +SLN+SA NSNSPASSAPFRYDPND+S DD +GS +SAIKNLNFSKIA+E GA S SPDWMR ++ AA G GAT SG G+ S SGVIYSDD+SDLSV SDIDEGVIARANAFAAEE+ARKARMEAE +R VD+ G A GN+ER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPHPKP VKRTTP+RG + LSPGSFI QVE TGKDGKRTLTPVRRSRRISG + E TPA LR
Sbjct: 76 PQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAAXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHMNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLYSAGGGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVVAAFEGRMNARAEADIDRLLEDSVDGLSLNNSAANSNSPASSAPFRYDPNDLSTEDD--TGSAQSAIKNLNFSKIAKESGGRG-GASVDRASRAGSSTSGSGSNTSLTTRSGASPDWMRGANEEVEEDEKDSQAASSGAKGGATASGEGIESFSGVIYSDDDSDLSV-SDIDEGVIARANAFAAEEDARKARMEAEEAGRVPGGVARDVVDDGAGAKDGSLREEDVVAEVPEGADLDAGAAREATAGNDERAKK-------------------------------------SGANGDSNDRGVSSTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPHPKPLVKRTTPRRGKDVDGEELSPGSFITQVEGTGKDGKRTLTPVRRSRRISGVAKEPTPALLR 630
BLAST of mRNA_C-linearis_contig99.17150.1 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI) HSP 1 Score: 326 bits (836), Expect = 3.170e-98 Identity = 241/338 (71.30%), Postives = 261/338 (77.22%), Query Frame = 1 Query: 328 PQRMPFQVDARRVREASERRVAPGTPIHSLKKRLKRTGTSEAQKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLDAARTKEVSDYLKSQISEANMLMEISGVDAARALLADLRSCTDAARGVGELALYWAARAKLEEDAGEYRAARQLLDEGEAYISMPTQQKVMTKVMAAFEGRMNDREEVEVARLLEDSVGSMSLNDSATNSNSPASSAPFRYDPNDVSMGDDDNSGSPRSAIKNLNFSKIAREG------DSSDLGAGSAXXXXXXXXXXXXXXXXXXXXXSAFSPDWMREAAAAGEGESEGATSGG 1323
PQR PFQVD R +++ASERRV PGTPIHSLKKRLKRT A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLD+ARTKEVSDYLKSQISEANML+EI+GVDAAR LL DL SC A RGVGELALYWAARAKLEEDAG Y AR+LLD+GEAYISMPTQQKVM KVMAAFEGRMN R E ++ RLLEDSV +SLNDSA NSNSPASS PFRYDPND+S DD +GS +SAIKNLNFSKIA+E SS G+GS S SPDWMR+A EG+S+ A+S G
Sbjct: 76 PQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRT--------AVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCAGAGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVMAAFEGRMNARAEADIDRLLEDSVDGLSLNDSAANSNSPASSTPFRYDPNDLSTEDD--TGSAQSAIKNLNFSKIAKESGGRGGASSSTSGSGS---------------NTSLTTRSGASPDWMRDANEEQEGDSQAASSAG 388
BLAST of mRNA_C-linearis_contig99.17150.1 vs. uniprot
Match: A0A835Z189_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z189_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.400e-11 Identity = 42/97 (43.30%), Postives = 67/97 (69.07%), Query Frame = 1 Query: 655 VSDYLKSQISEANMLMEISGVDAARALLADLRSCTDAARGVGELALYWAARAKLEEDAGEYRAARQLLDEGEAYISMPTQQKVMTKVMAAFEGRMND 945
+SD L++ + +A + +I G +AA LL ++ + + + V E ALYWAARA+L ED G +R AR +LDEG+AY+S+ Q+ V+ K++AAFE R ++
Sbjct: 1 MSDILRTNVEQAEAIQKIGGTEAALTLL-EVLAKSRIYKDVTEFALYWAARARLHEDDGNWRIARSILDEGDAYMSLTPQKMVLGKIIAAFEKRCHE 96 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17150.1 >prot_C-linearis_contig99.17150.1 ID=prot_C-linearis_contig99.17150.1|Name=mRNA_C-linearis_contig99.17150.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=719bp MESNDGLSRKEKLAIWRANKAGTGASEGGGGKGKSKAVAVAVDSTGSRAGback to top mRNA from alignment at C-linearis_contig99:195499..205402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17150.1 ID=mRNA_C-linearis_contig99.17150.1|Name=mRNA_C-linearis_contig99.17150.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9904bp|location=Sequence derived from alignment at C-linearis_contig99:195499..205402- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:195499..205402- >mRNA_C-linearis_contig99.17150.1 ID=mRNA_C-linearis_contig99.17150.1|Name=mRNA_C-linearis_contig99.17150.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4314bp|location=Sequence derived from alignment at C-linearis_contig99:195499..205402- (Chordaria linearis ClinC8C monoicous)back to top |