mRNA_C-linearis_contig99.17144.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 236 bits (602), Expect = 3.170e-73 Identity = 128/303 (42.24%), Postives = 185/303 (61.06%), Query Frame = 1 Query: 28 MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGD--DCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQAN--ETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVK---PGVCTP-----ECPAWYRAKVYFEGLHADSTRQDKLLNESG---LLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMME 891 MNK+G ST+K +LA + + +Y + EG+D + FL +++ G YTE LRPFGG +CKWFT+FRHPI R++SA YCK +P + LC T L AN +TD + FAEHWG++GLRQ+A+AFV ++LL+ +VK G+CTP CP WY K+Y + + + + G G A +++L +PV LL+ YAAVG+LE+WE S++LF+ AL + +W ++ KN G F E+ ++L +W D RL+R +SLDLLLYD+AV V QQ+ YG+ E Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSD-GTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGE 302
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 229 bits (585), Expect = 3.590e-70 Identity = 119/300 (39.67%), Postives = 164/300 (54.67%), Query Frame = 1 Query: 10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPE-------CPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888 CW+F+HMNKSG T++ ++ + S ++ + + G +TF+ +NA GGYTE LR + D CKWFT+FRHP+SRV+SA YC+ + LC VL A++ D TFAEHWGNYGLRQ+A+A + +D+ EV C PAWYR K Y H D G + ++ +A LSTRYAAVGI+EEW+ SM LF+ L L + +W K +S KN G F L+ AW+ LK+ I LD+LLYDHA+ V Q+ G++ Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRD-CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDF--------CGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGIV 342
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 229 bits (583), Expect = 3.740e-70 Identity = 121/296 (40.88%), Postives = 179/296 (60.47%), Query Frame = 1 Query: 1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGL-LEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885 P CW++T MNK+G ++I+ ++ + T + ++ Y G+ ++ L + +++ G YTE LRP+ CKWFTM RHPI+R++SA YC PS+ LC T + + + D + FAEHWGN+G+ Q+A+AF D +D+L EVK P WY+AK+YFEG S + N S + + M + +PV LL ++YAAVGILE+WE SM+LFDHAL+L NW+ +SA S +N SK K+DLL + D LK+ + LD+LLY+HA V + Q+ YG+ Sbjct: 34 PPACWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKS-------PPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVH---DSKAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 205 bits (521), Expect = 8.140e-61 Identity = 109/293 (37.20%), Postives = 164/293 (55.97%), Query Frame = 1 Query: 10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAA-MANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885 CW+FTH NK+G +T+K L + + + Y G+ ++ L+ ++AGGY E LR CKWFTM RHPI+R+ISA YC + LC + + + D + FA+HWGNY L Q+A+ VDQ ++ + EV + PAW++AK+YFEG N + E + + ++ +PV LL + YAAVGILE W++SM+LFDHALE+ NW+ +SA + I EK +L A D L++ + LDLLLY++A + E+Q++ Y + Sbjct: 37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRT-SAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFAEEV-------DAPAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV--EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 196 bits (497), Expect = 1.050e-55 Identity = 123/326 (37.73%), Postives = 180/326 (55.21%), Query Frame = 1 Query: 1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGS-FRIYSQLLYGEGEDRLKTF---LSQNAT--VVAGGYTEALR---PFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPA-----------WYRAKVYFE-------GLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSA---RSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888 P CW+F H+ K G ST+K +L R + GS + IY + G+D F L++ T V+AGGYTEALR P G C++FT+FRHPI+R++SA YC+S + C + V+ A + D TFA+HWGN+ +RQ+A+ FV D V+ + TPE A WY+ K+Y E G+ S + + LE A + +L +P +L+ + Y AVGILE+W ++ LFDHALE+ + W A + R K + + S + L+ AW D LK+ + LDLLLY+HAV VF +Q +GYG++ Sbjct: 153 PDQCWVFMHLQKCGGSTVKYML----RRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAG--CRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDG-----VQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLE--APLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLES----ETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 195 bits (495), Expect = 2.080e-55 Identity = 114/311 (36.66%), Postives = 170/311 (54.66%), Query Frame = 1 Query: 1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGS-FRIYSQLLYGEGEDRLKTF-----LSQNATVVAGGYTEALR---PFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADS-----TRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKD-DLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888 P CW+F H+ K G ST+K +L GS F IY + + G++ F L V+ GGYTEALR P G G C++FT+FRHPI+R++SA YC+S ++ C + V+QA + D TFA+HWGN+ LRQ+A+ FV DD+ Y+ K+Y E + R+ ++ DA + L +P +L+ Y AVGILE+W ++ LFDH L++ +NW + A S + I +K+ + + L+ AW D LK+ + LDLLLY+HAV VF QQ + +G++ Sbjct: 174 PGQCWVFMHLQKCGGSTVKDLLEDRW----GSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAG--CRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE---------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVD--IVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.860e-51 Identity = 115/312 (36.86%), Postives = 165/312 (52.88%), Query Frame = 1 Query: 10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEG-EDRLKTFLSQNA--TVVAGGYTEALR--PFGGGDD----CKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKP------GVCTPEC---PAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMME 891 CWIF H+ K+G +T+K +L ++ Y Q G+G + + L+ A + AGGY EALR P DD C+WFT+FRHP+SR++SA YC+ +PS+ LC + + + D TFA HWGN+ LRQ+A+ FV D + V P G+ + P WY K++ L+ S D E LE +F PV +LL YA VGILE+W ++ LFD AL++ + W + RS N F EK D+L+ A +D + + +SLDL LY AV +F QQ YG+ + Sbjct: 88 CWIFNHLQKAGGTTVKRLLFDSWGSESTTYDSY-QWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLF---LNDRSGVADDTSPEGTRLE------YMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTR-FKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.420e-50 Identity = 93/218 (42.66%), Postives = 136/218 (62.39%), Query Frame = 1 Query: 241 MFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPEC--PAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888 ++ PI R++SA YCK + LC + VL+A TD HTFA+HWGNYGLRQ+++AFV +D+ + E + G+ P WYR K YFE D ++ L+ E+G D AM+ L +PV +LLS Y+AVGILE+WE SM LF+ AL++ NW +S KN + + +E LR AW+D L +++ LD+ LYDHAV V +Q++ +G++ Sbjct: 17 QYKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQF-DVEQERALMQETGA-SNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAH-ALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.290e-32 Identity = 95/301 (31.56%), Postives = 144/301 (47.84%), Query Frame = 1 Query: 10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDL---------LRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885 CWIF HM+KSG S + + + R ++ + + G+ ++ + ++ GG E+LR CKW T+FRHPI+R++SA +C P + +C T FAE WGN+ +RQ+A+ V + + T WY K Y L G+ E D + ++ EPV LLST+YAAVGI +E E +MVLF AL + L+WS S A GI + K D R A + R+ ++ LD+ LY+HA+ VF+ Q+ +G+ Sbjct: 273 CWIFMHMDKSGASGARRVATERWRKDE---LVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERS-CKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPT----ESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTS-MWYLVKEY--------------LARGGIAE-DEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATL-------GINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 126 bits (316), Expect = 5.180e-31 Identity = 92/295 (31.19%), Postives = 140/295 (47.46%), Query Frame = 1 Query: 28 MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDL---------LRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885 M+KSG S + + + R ++ + + G+ ++ ++ GG E+LR G CKW T+FRHPI+R++SA +C P + +C T FAE WGN+ +RQ+A+A V + + T WY K Y L G+ E D + + EPV LLST+YAAVGI +E + +MVLF AL + L+WS S A GI ++K D R A + R+ ++ LD+ LY+HAV VF+ Q+ +G+ Sbjct: 1 MDKSGASGARRVATEQWRKDE---LVFDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRS-CKWITIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTS-MWYLVKEY--------------LARGGIAE-DEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATL-------GINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17144.1 >prot_C-linearis_contig99.17144.1 ID=prot_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVback to top mRNA from alignment at C-linearis_contig99:97968..99443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17144.1 ID=mRNA_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1476bp|location=Sequence derived from alignment at C-linearis_contig99:97968..99443- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:97968..99443- >mRNA_C-linearis_contig99.17144.1 ID=mRNA_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig99:97968..99443- (Chordaria linearis ClinC8C monoicous)back to top |