Homology
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
D7FMQ7_ECTSI (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ7_ECTSI)
HSP 1 Score: 330 bits (845), Expect = 1.720e-101
Identity = 164/194 (84.54%), Postives = 176/194 (90.72%), Query Frame = 1
Query: 478 GYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPLLRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEELDQ 1059
GYAR+ALVL SYYLAETNWKAS FYLVAFAGDAVDGH+AR F QASRFGAVLDMVTDRCSTAGLLLVLSRLY R HAFAFLVLMF+DLFSHWMHTHSVV++HHKST L+RRN L+R YYD+LPFFAFCCIG ELFYVLLYLLHFVS++SRAF LR CFWLCLP+CVLKQF+NIAQIFSAA LALEELDQ
Sbjct: 9 GYARVALVLASYYLAETNWKASSCFYLVAFAGDAVDGHVARKFKQASRFGAVLDMVTDRCSTAGLLLVLSRLYDRRHAFAFLVLMFIDLFSHWMHTHSVVEKHHKSTATLKRRNMLIRTYYDNLPFFAFCCIGAELFYVLLYLLHFVSEESRAFAPLRTSCFWLCLPACVLKQFVNIAQIFSAASCLALEELDQ 202
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A6H5JEV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV5_9PHAE)
HSP 1 Score: 316 bits (810), Expect = 7.970e-95
Identity = 164/211 (77.73%), Postives = 178/211 (84.36%), Query Frame = 1
Query: 427 EEHQRVRNVLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPLLRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEELDQ 1059
EE +RVR+VLLYYPNLIGYAR+ALVL SYYLAETNWKAS FYLVAFAGD VDGH+AR F QASRFGAVLDMVTDRCSTAGLLLVLSRLY R HAFAFLVL+ VV++HHKST L+RRN L+R YYD+LPFFAFCCIG ELFYVLLYLLHFVS++SRAF LR CFWLCLP+CVLKQF+NIAQIFSAA LALEELDQ
Sbjct: 119 EEQKRVRSVLLYYPNLIGYARVALVLASYYLAETNWKASSCFYLVAFAGDVVDGHVARKFKQASRFGAVLDMVTDRCSTAGLLLVLSRLYDRRHAFAFLVLI-------------VVEKHHKSTATLKRRNILIRTYYDNLPFFAFCCIGAELFYVLLYLLHFVSEESRAFTPLRTSCFWLCLPACVLKQFVNIAQIFSAASCLALEELDQ 316
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
D8LI10_ECTSI (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI10_ECTSI)
HSP 1 Score: 238 bits (606), Expect = 7.570e-68
Identity = 126/207 (60.87%), Postives = 152/207 (73.43%), Query Frame = 1
Query: 451 VLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLY-GRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFP------LLRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEE 1050
VL Y+PNLIGYARI VL SYYLA+TNWKAS Y++AF GDAVDG +AR FNQ+S+FGAVLDMVTDRCSTAGLL+VLSRLY G AF FL+LMF+DLFSHWMH S HHK+ L RN + R +Y PFFAFCC+GTELFYV LYLL FV + S A L +C+++ LP+CV KQ +N+AQ+ +A+ +LA E
Sbjct: 9 VLFYFPNLIGYARIIAVLASYYLADTNWKASFVCYVLAFVGDAVDGAVARYFNQSSKFGAVLDMVTDRCSTAGLLMVLSRLYEGGTPAFLFLLLMFIDLFSHWMHVQSTAGRHHKAADTLADRNVITRLFYGCYPFFAFCCVGTELFYVALYLLVFVPEASLALGGGGAAVSLHAVCYYVFLPACVCKQAVNVAQLCAASLSLASAE 215
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A835ZHK8_9STRA (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK8_9STRA)
HSP 1 Score: 211 bits (538), Expect = 9.310e-59
Identity = 115/205 (56.10%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 451 VLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDE-HHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPL-------LRKLCFWLCLPSCVLKQFINIAQIFSAAQTLA 1041
V LYYPNLIGY+RIA VL SYY+A TNWK S+ FY++AFAGD VDG +AR FNQ+S FGA LDMVTDRCSTAG+L VL+ LY +AF F+ LMF+D+FSHW+H SV + HHK+ L+ RN+L+R +Y PFF +CC+ TE FY+ LY+L F AF L +L F+ CLP+CV KQ +NIAQ+ +AA ++A
Sbjct: 9 VFLYYPNLIGYSRIAAVLASYYVAGTNWKLSVCFYVLAFAGDVVDGAVARRFNQSSSFGATLDMVTDRCSTAGMLFVLAGLYPA-YAFHFMCLMFLDIFSHWIHVASVATKGHHKAAGTLQGRNWLIRLFYSCYPFFGYCCVFTEFFYICLYMLAF---NKDAFITVGGVEVHLWQLTFYGCLPACVCKQAVNIAQLCAAAYSMA 209
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A2D4CBV6_PYTIN (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBV6_PYTIN)
HSP 1 Score: 189 bits (479), Expect = 7.510e-51
Identity = 107/208 (51.44%), Postives = 141/208 (67.79%), Query Frame = 1
Query: 451 VLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGR-LHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPL----LRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEELDQ 1059
V Y PN+IGY R+ L S +A ++K S+ Y ++F D DG AR FNQ S +GAVLDMVTDRCSTAGLL++LS LY + +H F FL+++ D SHW H +S HHK+ +A RNFL+R YY PFF +CC+GTELFY+LLY+LHF S P+ L LCF++CLP+CVLK INIAQ+ SAA T+A ++++Q
Sbjct: 14 VFFYVPNIIGYVRVVLSAYSLLIAMDDYKTSIICYALSFVCDYFDGFFARWFNQCSNYGAVLDMVTDRCSTAGLLVILSHLYPKFMHVFLFLLIL--DFSSHWYHMYSSKG-HHKTVSA--DRNFLLRLYYGVYPFFGYCCVGTELFYILLYVLHF--NASYVIPVIELPLHHLCFYVCLPACVLKNLINIAQLSSAAYTVAQDDVNQ 214
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A5D6XI13_9STRA (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI13_9STRA)
HSP 1 Score: 187 bits (474), Expect = 3.530e-50
Identity = 106/203 (52.22%), Postives = 138/203 (67.98%), Query Frame = 1
Query: 451 VLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQ---SRAFPLLRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEE 1050
V Y PNLIGYAR+AL S +A+T+ +AS+ Y ++F D DG AR F+Q S FGAVLDMVTDRCSTAGLL++LS LY + + AFL L+ +D SHW H ++ HHK+ A RN L+R YY + PFF FCC+GTELFY+LLY+LHF PL +LC+++C P+CVLK INIAQ+ SAA +A+E+
Sbjct: 12 VFFYVPNLIGYARVALTAYSLAVAQTSPRASVTCYALSFVCDYFDGFFARWFDQCSNFGAVLDMVTDRCSTAGLLVILSHLYPQ-YMLAFLFLLILDFSSHWYHMYASKG-HHKTVAA--ERNLLLRVYYGNYPFFGFCCVGTELFYILLYVLHFFPTALIPGVDVPL-AQLCYYVCGPACVLKNLINIAQLTSAAHAVAVED 209
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A8K1FF61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF61_PYTOL)
HSP 1 Score: 184 bits (468), Expect = 1.990e-49
Identity = 104/205 (50.73%), Postives = 135/205 (65.85%), Query Frame = 1
Query: 451 VLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQ---SRAFPLLRKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEELD 1056
V Y PNLIGY R+ L L S Y+A ++K S+ Y ++F D DG AR FNQ S FGAVLDMVTDRCSTAGLL++LS LY + + FL L+ +D SHW +S HHK+ RN L+R YY+ PFF +CC+GTE FY+LLY+LHF AFPL KL F++CLP+CVLK IN+AQ+ SAA +A ++++
Sbjct: 10 VFFYVPNLIGYVRVVLSLYSLYVALDDYKTSVLCYALSFVCDYFDGFFARWFNQCSNFGAVLDMVTDRCSTAGLLVILSHLYPK-YMIVFLYLLILDFSSHWYQMYSAKG-HHKTVAD---RNLLLRLYYNVYPFFGYCCVGTEFFYILLYVLHFDPAYVIPGTAFPL-EKLAFYVCLPACVLKNIINVAQLASAAHAVAQDDIN 208
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A0N7L8K7_PLAHL (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L8K7_PLAHL)
HSP 1 Score: 184 bits (468), Expect = 2.050e-49
Identity = 104/207 (50.24%), Postives = 137/207 (66.18%), Query Frame = 1
Query: 442 VRNVLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPLLR----KLCFWLCLPSCVLKQFINIAQIFSAAQTLALEE 1050
V V Y PNLIGY R+ L L S +A TN+K S+ Y ++F D DG AR NQ+S +GAVLDMVTDRCSTAGLLLVLS LY + + FL L+ +D SHW H +S HHK +A RNF++R YY PFF FCC+G ELFY+LLY+LHF + P++ KLCF++CLP+C+ K +N+AQ+ SAA ++A ++
Sbjct: 6 VMGVFFYVPNLIGYMRVLLTLYSLAVAFTNYKVSVLCYALSFTCDYFDGFFARLCNQSSTYGAVLDMVTDRCSTAGLLLVLSHLYPQ-YWIIFLYLLILDFSSHWYHMYSSRG-HHKVVSA--ERNFVLRFYYGFYPFFGFCCVGAELFYILLYVLHF--NPTVLIPIVNVPVMKLCFYVCLPACICKNIVNLAQLCSAASSIATDD 206
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
A0A3M6VUR7_9STRA (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUR7_9STRA)
HSP 1 Score: 184 bits (467), Expect = 3.270e-49
Identity = 105/211 (49.76%), Postives = 141/211 (66.82%), Query Frame = 1
Query: 430 EHQRVRNVLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPLLR----KLCFWLCLPSCVLKQFINIAQIFSAAQTLALEE 1050
+H+ V V Y PN+IGY RI L + S +A T++K S+ Y ++F D DG AR +Q S FGAVLDMVTDRCSTAGLL+VLS LY + + F+ L+ +D SHW H +S HHK +A RNFL+R YY PFF FCC+GTELFY+LLY+L+F K P++ +LC+++CLP+CV K F N+AQ+FSAA ++A E+
Sbjct: 7 KHRTVMGVFFYVPNVIGYMRILLSIYSLAVAFTDYKTSVLCYALSFTCDYFDGFFARLCDQCSSFGAVLDMVTDRCSTAGLLIVLSHLYPQ-YMMLFMYLLILDFSSHWYHMYSSRG-HHKLVSA--ERNFLLRFYYGCYPFFGFCCVGTELFYILLYVLYFDPKLL--IPIINVPVMQLCYYVCLPACVCKIFTNLAQLFSAAHSIASED 211
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Match:
F0W2D6_9STRA (CDP-diacylglycerol--inositol 3-phosphatidyltransferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2D6_9STRA)
HSP 1 Score: 183 bits (465), Expect = 1.120e-48
Identity = 104/204 (50.98%), Postives = 134/204 (65.69%), Query Frame = 1
Query: 445 RNVLLYYPNLIGYARIALVLTSYYLAETNWKASMGFYLVAFAGDAVDGHIARAFNQASRFGAVLDMVTDRCSTAGLLLVLSRLYGRLHAFAFLVLMFVDLFSHWMHTHSVVDEHHKSTTALRRRNFLVRKYYDHLPFFAFCCIGTELFYVLLYLLHFVSKQSRAFPLL--RKLCFWLCLPSCVLKQFINIAQIFSAAQTLALEE 1050
+NV LY PNLIGY R+AL L S +A ++K S+ Y +FA D DG AR NQ S FGAVLDMVTDRCSTAGLL +L+ LY + FL ++ +D SHWMH +S HHK T L RNFL+R YY P F FCC+G+E+FY+LLY+L F + F L LC+++CLP+CVLK +N+AQ+ SAA +A E+
Sbjct: 28 KNVFLYVPNLIGYLRVALSLYSLSIALIDYKISLLCYACSFACDYFDGLFARWLNQCSSFGAVLDMVTDRCSTAGLLFILAHLYPDKRIY-FLYILLLDFSSHWMHMYSSRG-HHK--TGLNERNFLLRVYYGCYPLFGFCCVGSEVFYMLLYVLAFEASYKIPFTQLPLTHLCYYVCLPACVLKNIVNLAQLLSAANAIATED 227
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17142.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.72e-101 / Id = 84.54 Expect = 7.97e-95 / Id = 77.73 Expect = 7.57e-68 / Id = 60.87 Expect = 9.31e-59 / Id = 56.10 Expect = 7.51e-51 / Id = 51.44 Expect = 3.53e-50 / Id = 52.22 Expect = 1.99e-49 / Id = 50.73 Expect = 2.05e-49 / Id = 50.24 Expect = 3.27e-49 / Id = 49.76 Expect = 1.12e-48 / Id = 50.98 Sequence D7FMQ7_ECTSI A0A6H5JEV5_9PHAE D8LI10_ECTSI A0A835ZHK8_9STRA A0A2D4CBV6_PYTIN A0A5D6XI13_9STRA A0A8K1FF61_PYTOL A0A0N7L8K7_PLAHL A0A3M6VUR7_9STRA F0W2D6_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 334.0 Seed ortholog evalue 8.4e-89 Seed eggNOG ortholog 2880.D7FMQ7 Preferred name PIS1 KEGG rclass RC00002,RC00031,RC00078,RC02795 KEGG ko ko:K00999,ko:K15893 KEGG Reaction R01388,R01802 KEGG Pathway ko00260,ko00562,ko00564,ko00630,ko01100,ko01110,ko01130,ko01200,ko04070,map00260,map00562,map00564,map00630,map01100,map01110,map01130,map01200,map04070 KEGG Module M00532 Hectar predicted targeting category signal peptide GOs GO:0003674,GO:0003824,GO:0003881,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576 EggNOG free text desc. CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity EggNOG OGs COG0558@1,KOG3240@2759 Ec32 ortholog description CDP-diacylglycerol-inositol 3-phosphatidyltransferase Ec32 ortholog Ec-23_001230.1 EC 2.7.8.11 COG Functional cat. I Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000 Exons 8 Model size 3741 Cds size 1011 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930844.8766708-UTR-C-linearis_contig98:574856..574913 1622930844.8766708-UTR-C-linearis_contig98:574856..574913 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 574857..574913 + 1690881279.0873652-UTR-C-linearis_contig98:574856..574913 1690881279.0873652-UTR-C-linearis_contig98:574856..574913 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 574857..574913 + 1622930845.0574849-UTR-C-linearis_contig98:579726..581927 1622930845.0574849-UTR-C-linearis_contig98:579726..581927 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 579727..581927 + 1690881279.191483-UTR-C-linearis_contig98:579726..581927 1690881279.191483-UTR-C-linearis_contig98:579726..581927 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 579727..581927 + 1622930845.0806065-UTR-C-linearis_contig98:582010..582482 1622930845.0806065-UTR-C-linearis_contig98:582010..582482 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 582011..582482 + 1690881279.2024763-UTR-C-linearis_contig98:582010..582482 1690881279.2024763-UTR-C-linearis_contig98:582010..582482 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig98 582011..582482 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930844.8931763-CDS-C-linearis_contig98:574913..575334 1622930844.8931763-CDS-C-linearis_contig98:574913..575334 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 574914..575334 + 1690881279.101008-CDS-C-linearis_contig98:574913..575334 1690881279.101008-CDS-C-linearis_contig98:574913..575334 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 574914..575334 + 1622930844.9362316-CDS-C-linearis_contig98:576294..576358 1622930844.9362316-CDS-C-linearis_contig98:576294..576358 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 576295..576358 + 1690881279.1111758-CDS-C-linearis_contig98:576294..576358 1690881279.1111758-CDS-C-linearis_contig98:576294..576358 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 576295..576358 + 1622930844.9585238-CDS-C-linearis_contig98:576680..576751 1622930844.9585238-CDS-C-linearis_contig98:576680..576751 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 576681..576751 + 1690881279.1242228-CDS-C-linearis_contig98:576680..576751 1690881279.1242228-CDS-C-linearis_contig98:576680..576751 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 576681..576751 + 1622930844.9761376-CDS-C-linearis_contig98:577193..577350 1622930844.9761376-CDS-C-linearis_contig98:577193..577350 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 577194..577350 + 1690881279.1341817-CDS-C-linearis_contig98:577193..577350 1690881279.1341817-CDS-C-linearis_contig98:577193..577350 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 577194..577350 + 1622930844.9991238-CDS-C-linearis_contig98:577979..578083 1622930844.9991238-CDS-C-linearis_contig98:577979..578083 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 577980..578083 + 1690881279.1443136-CDS-C-linearis_contig98:577979..578083 1690881279.1443136-CDS-C-linearis_contig98:577979..578083 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 577980..578083 + 1622930845.016824-CDS-C-linearis_contig98:578778..578858 1622930845.016824-CDS-C-linearis_contig98:578778..578858 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 578779..578858 + 1690881279.1613977-CDS-C-linearis_contig98:578778..578858 1690881279.1613977-CDS-C-linearis_contig98:578778..578858 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 578779..578858 + 1622930845.0408754-CDS-C-linearis_contig98:579612..579726 1622930845.0408754-CDS-C-linearis_contig98:579612..579726 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 579613..579726 + 1690881279.1783726-CDS-C-linearis_contig98:579612..579726 1690881279.1783726-CDS-C-linearis_contig98:579612..579726 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig98 579613..579726 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17142.1
>prot_C-linearis_contig98.17142.1 ID=prot_C-linearis_contig98.17142.1|Name=mRNA_C-linearis_contig98.17142.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=337bp
MRFASLLLAHVVVAVVATHGGGSTTKSEIRRGREVSTAAAVVGRSVPTSD back to top mRNA from alignment at C-linearis_contig98:574857..582482+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17142.1 ID=mRNA_C-linearis_contig98.17142.1|Name=mRNA_C-linearis_contig98.17142.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7626bp|location=Sequence derived from alignment at C-linearis_contig98:574857..582482+ (Chordaria linearis ClinC8C monoicous)ACCGCCGGCGCGAACGAGCCCGGACAAAACACCCAAGCCCTGCAGCATCA
CAGCATC ATGCGCTTCGCAAGCTTGCTGCTGGCACACGTAGTGGTGGCGG
TTGTGGCCACACACGGCGGTGGAAGCACGACGAAATCCGAAATTCGAAGA
GGTCGCGAAGTATCCACAGCAGCAGCTGTAGTAGGGCGCAGCGTACCGAC
TTCCGATAGCAGCCCACACGGTAATGCGGCTCTACGTAGATCACCAGCAC
CAGCTATGTGTTCATCGTCGTCTCCGCGAGGAGCGCGAGAAATTGCAAGC
CGGAGACGGAAAACTTCATCAAATCCCCACCGCCGCTTGAAAGCTCTTCC
ACCGCAACCGCCGCCGCTATGGTTGCTTCGGGGTGGGGGATCTACTGCTA
CGCGACGGGAAGAGAGACGGGCGTACGAGGAGCACCAGCGAGTGAGAAAT
GTGCTGCTGTACTACCCAAACCTGATAG GTAAGGTTTCTGAAGACGCAAG
GTTTCTGAAGACGCAAGGTTTCTGAAGACGCGAACAACAAGCAGCACATT
TCATCGCGGGCGGTCTCACAAACAAACGCAGCAGCTAGCAGCAGTTCGGT
GCGCAGATAGATACGGCGGTGCTCGAGATGTCTAGCGCTGCTGCTGTTTG
TCAAGGCTCTCATGTAGCAACAACGGCGGCGTTTCTAGATAGCAGAATCG
CTCTGTGGCTTCTGCTGCTGTTGTTGCTACTCCTGCACTTACTATGTTTG
CCTTCACCTTACATCAAGCCTGAAATGGGCTCGTGCTGAAACAAATTGAA
GTGAGGATCGCATCTAGACGAGCGTCAACGGCCACGCTGTGATCCCTACT
CCCCCTACTCACACCCTTGATACTTTTATTCTGCGCATTGAATCCGCCGG
TATTTTTTTCTCTACGCGGCAGGAACACCGAGCATGTACATACTGCTGTA
TGTCACATGACACATCGCTGTGTTTATTTGTTGATGCAAATGTGTAATTT
AGCATCGTGCACATCAACACTTCTTTATTGTAGGAGTATGTGTTTGAACA
CCACATTTCTATTTTGATTTTTCCGAAGTGTACCTACTGCTTCGTAGGAT
CGCTCGTGGAGGGTGCGTTTGGTGCGTTCGTTGCGCGTGGCACCCTAACC
CTCTGGTGCCGCCGGCGCTCACGGGTCGCTTCCAGGACATGGATGTCTCT
CTCAAAGAACAAGCTATAATAGCCGAGGACTTAGGGCACGTTTGTCGTGG
CTAGGGTTTTTACGTTTTTACTCGGCATACGAAATGAGGCATGCTGCCTA
AGCAGGACTGTCAGTTCGTTCACCGTCTTGGGTAGGGTTCCGCTCTCCCC
ATCAAATAATTTTCTAGCTCGCTATCCGTTGTTGGAAGCGAATTAAACTC
CGCCTGCCCCCTCGACCCCCGTTTTTTTCCACCTTCAGGCTACGCGAGAA
TAGCCCTGGTGCTAACGAGCTACTACCTCGCGGAGACCAACTGGAAAGCA
AG GTGGGGAGGGGGGAAGAGAGAGCGAGATGGAAAGGAGAACGTGCCCTC
TACTACTTACTGTCCATGTCCAGGCTTCCTTCGGCCAGACCATATTCGGA
ATCAGCTCAGCTTCTTTCAGGCGCCTGCTGCTCTTCGGAACTAATTATCA
TGCATAGGCTTACTTTGTCCATCCGACAACAACTGCAGATTCGGTCAGTC
GAAATACACTCATCATGTCTATAAAAAGATTAATTGTTTTTACTTGATCC
GCCATACGTCTTTCTCTCGCCCTTGCCGATTGTGTGACACCTAACCCCGA
CTTAATATGTTGTGCTTGTTTCAGCATGGGGTTCTACCTGGTGGCCTTCG
CGGGGGACGCTGTTGACGGACACATCGCGCGCGCCTTCAACCAAG GTGCA
GACAGGATTGTGTTTTTCATCAGCCCGCGAGATACATTTTCTACCTCCTG
TTTATATTAGTGCGCAATGCACTGCGCTGCACGGCGCTGTAGCTGTGTTG
CCGTAGCTGTACCAGGTGCTGTACTGCAAGTTAGGCTGCTAAAGTTTCGC
GAGTTGGACGTTCCAACGTTTGCTCCATCAAGTCGGATTGCCACGCCAGC
TTCACTTGCCACGCAAGGTTATCTTGAGACGATGAACCGCAACGAAAACC
CGAACAACAGCAATGAGTGCACTCACGACGCCCCCCGGTGGTGTCTTCTT
TTGCGTGTCAACCACAACGATGTACATAGTCGGAAAACCCCCGGTTGTAA
CTTCCTTTTTGCGCCGATCAACAGGCAGCAGGATAGTCACGAAACTGCTG
TCTGTCCCCGTCATGTCTTTGTTTTGTGTGTCGAAAGCCTCGCGGTTCGG
CGCGGTGTTGGACATGGTGACGGATCGGTGCTCGACGGCGGGGCTGCTGC
TGGTGCTGTCCCGGCTGTACGGGCGGCTTCACGCCTTCGCCTTCCTCGTC
CTCATGTTCGTCGACCTCTTCAGCCACTGGATGCACACGCACAG GCGAGG
CGAGGGAGACCCACCTTACCGTGTATTGAAGAGATGGCTTCGCTGTCCTG
CTGTGCAGGGCCCTAGACCCAACGCGTCCACTCTTAGCTACAAACCACTT
TTTTTGTGCAGAGGTTCTTTTGAAGGCGGTGTCGGGGTCCATTTTATTGT
AACTCTCCAGTTATTTCGTTTTTTTCCATGGGGGCAGGAGTAGAAGCAGG
TAATAGTAGATGTTGTTGCTGCTGGTGCTGTTGTTTGTCATGTCTTGTGT
CGGGTTGCTACAGGAAAACGTTGGTGATGAAAACGGTGCGGTCAGCAGCA
CGGGTGTGTGCAACCGTCAAGGAAGTTTTGGACAGCCTGACACAGATGGG
ATGGGGGGAAACAGGACACTAACAACGCCTAGCCGAGATCGGTCGAGGTT
GATAGTTTTCCACAAGAGACCAAACACCTGGGGGATAAAATGAGCAAAAG
GGCTAATAGAGTCTTCGGGAAACACGTTGGACGCGCCTAAGCGTAGGTAG
GTGCTTCTGGTATGGATAGCACCCGCCTCCAAATGTTCATGTTTCGGATC
GAGCGTTCAGAGCAAGCATCCCCTCCCGGCGCTCTTCTGTCGCTGCCGTG
TGTTTGTTCTCCCCCGTCTTCAGCGTTGTCGACGAACATCACAAGTCCAC
GACCGCTCTCAGGCGGAGGAACTTCTTAGTCCGCAAATACTACGACCACC
TTCCCTTCTTCGCCTTCTGCTGCATCG GTGAGGATACTTGCATTGATTGC
ATCGATAAGTTCAACCATGTCCAGAGCCGTGTAAACATCGTGCACGTTTC
ATGAAGGCACCCTACGAAGCAAAGGGCAGCTCGCTCTTGGGGAGATGGAC
ACTTTGATTGTACTGCTGTGCTGCATGTCGCACATCGTCTCCCTCCTTTA
CCCGCCCGGGGTGAGAGGAAAACTTGTCTCCCTTTTTATGAACTTGTCCA
CAAATAAATTTAGATTCGTTCGTGCACTAAGGGTTGGTGTTTACGCGTTC
GCTTGGCACAGCCAGTAGAGTTCATTCTTGGGCAAGTTTTTTCGCTGCGT
CAAAACCAGAAGAAGAAACTTGGGTTTGGGGTACGACACGGCATGCAAAC
GCTCTGAAACAACGACTCACGGTATCGTTTCGTTGAGCGCATGACGGAAA
GTACGTTTACCCGTTAAAAATCCCGTAAAAAAACACGGGAGAAGCTGCAG
TACATACGTAAAAAGACGCGCCTTCATGAAGGAATCACGCGGATTTGTTC
TTGACGTCGGCATCGATCATTCCAACCGCCTGGCAGTGCATAACTAACTT
CGAACGTGTGCCCAAGGCATGTGCAGCGAGAGAGGTGAAAACACACGACG
ACCGAAAGCTTGAGCTCCGAATCCCTGTGCCCCTTTTATCGGATCGCCTA
TTTTTCTGTATCTATCTCTAAGGCACCGAGCTGTTCTACGTGCTGCTTTA
CCTCCTGCACTTCGTGTCCAAGCAGTCTAGGGCCTTCCCACTGCTTCGCA
AG GTGAGACATCATCTGTATCTTCCATCTTCCATGCCATAATGAACCCGA
AATTGCACAGCAGCAGGGTACCGTTTACTTCAAGTTTAGTTTGTTTTGCG
CTTGGCTGCTGTTTTGGCTTTCGTTTCAATCGCCAGTCACGGTGCCGCCA
GTCACGGTGCCCCTACCCTTCGCGGAAAGACCTTGCTTATTATGTATCCA
AACGTAGACAACCGGAGCCGGTTTTAGTGCGCAGGCAGTGCCGGAAATTG
CCTGGACACTTTTTGCGGTTTGCTTTGTGGATGGACTCCATTTTTTTTGC
AAACCGTTCGGATCTACGCATTTTTGCATTTTGTCGCCCTTTGGGGATTG
AGTCGCGCTCGGAAAGTAATTCAAGTGCTGTGATCTGAAGTTGCCAAGGA
GGGAGAGAGATAGTCCAGGCAATCCATTTCGACCAAGAGTATGCGAATCG
ATTCAACGGTGCTTCTCCTTCTCCCGCGGGTCGGGTGAAATTCCTTCATG
GTGTAGAGGTGCTTGGTCTGGCCAGCAGCGTGTGAGCGAGCAACTCATTG
CTTTTTTTTACCTTCAGTTGTTTTGGGAGTAGATTAGACCGACCGCTTGC
TTTCTCGTGTCCGATCGCTGGCCGATGGTCGATTGATTCTCTCTTCCTGT
TGTAGCCCCAAAGGTAAGCAAGTTAAGGTAGTGTTGGCATGACGATTGTC
TTTTACTTCTCTCTCGCTCCCGCCCTCCCTCTCTCTTCCCCTTCCCCTGC
CGCCAGTTGTGCTTCTGGCTATGCCTGCCGTCGTGCGTCCTGAAGCAGTT
CATCAACATTGCCCAGATCTTCTCTGCCGCACAGACTCTGGCCCTTGAGG
AGCTGGACCAAAATATTTAA CTGCTGCTGCTGTCGCTTCCTCGTTCCGAG
AAGCTAACGAACCCCACTCATATGGAAGGCGCACGCAGTGACCTAGTTTC
ATACCCTCGAGTTTTGGAGGGGTAAAAAATGAGGTGACAAGGTGCGCGTT
CCATGAGTAGGGCAGGGCTCGTCAGCTCTCAAGAACGAGGCAGCACATTT
AGGAAAGACAGACAGACAGACAGCAGTGACGCTGCTGACAGTCTCTTAAG
ACCTCCTTTGTTGCGTTTGTTGCACGACCGTGAGTACAGAGCAGCACCAA
AACGGCTCGGCTGTTTTGTTGACAGAACGGGTTGAAACGACTCTTCCTAT
CATCAGGTGCGGGGTGCAGCATGCATGTTTCCCTTCTTCTGCGCAGGCGG
CGTGGACCGATCTACCTGTCTGTGCGGGTTGTCATTCTCCCGTGTTTTTA
TGTCTACATAGGCGGTGGTTTTCTGTGTACAGTAGCCACTCACCCGCGCA
TGGGACCGGCGATCTGTTATTTATTCTTCACCATTATCTATTTCGGTTCA
AGTGTACAATCAATAGTTGTCCGTAGACACCGCTTTCGGACCAAGGACAG
GGGGAGTCGTGGGTGGTGTTGATCGTATTCGGCAGCGAAGAATGGGTGGG
CGCGTGCTCGTTGTATCTACTGTTGTATGTAGGCCGACGACCAACAGCGT
ATCAATCTGTTCTTTCTTCGTAAATATGAGTAGATTGCTTCGCGAGACTG
CTGTCTATTGAGGGGCTGTTTCCCAGCTGCCCGGATTGTGTATTCGACGG
AGCGTGTCTTTGTTTTTGTCCATGCATGCGCTCGAAAAAGGAAAAAGCCT
CGTCCTCGTCCTCTCGACGAGGTTTCAAGGCTGCTGTAGGCAGATACATG
TATGTACGTTTTAGACGCCAAACGTTGAAACTGGTTCAGCTAGCAGAGAT
TACCGCTGTGTCCGCGCTTCTAACTGCGAGTACGATACGTAGCTTTCAGC
ACGCAGGAGAATGTTGACGATTTCATTTTTTTGTGTTTGTTTATTGTTAA
TTGTTCCCTGGATATACTACATGTACTCGACCCCGGTTGGTTCTAGTTGT
ACAGAAAAATACACTGAACAAGTGTAGTACTCTAAATACACCGCAACGTG
TAGTACACGTCTCGCCTTGATAGGAAAGGGACTGTCACCAAAATAAATTA
AATGGGACGAAAACACACACACACACACACACACACACTCGTAGTGCGAA
GAAGAAAACCGGTCTATTATATTCCACGTCAAAAATCTAAATCTTTGTTC
CACCCGGACCTGCATACATAACTAACTGTTGTAGGTTGCGTTGCCGCCAG
CAACACGCCCAACAGCTTTCTTTCTTTGCGCTTCGGCCGAAAAACAGCAA
AGCGAGGTGTACAGCAGTACATGTATATCAAAGTCGAAGCGCTGAGAGCG
CGGGTGAACATTGATATTTTGTTGTTAATTCAATTAATAAGTTAATGGGT
AAAAGACGACGAAAAAGACAGACAGGTGGACAAACCAAAACCACTTGCTT
GCGTCACCGTTCCCGTTGAATTATGAGAAAAAAAGCCGCCCCAAAACGTC
AGTATTTCCGAGCCAGTTCTTGTTTCCATAACGTGTGGGACAAATCAGTG
GCATCACCTCCCGCTGCCGGTGTCGGCCATTCCCCCCTTACTCGGCAAGC
CTCATATTTTTATTAATACTTTTTTTATCAGAGAACGGAAAAAGAAGAAA
GCAACTGGTGGTACCTAGTATGGAGTATATAACTCCATCCAACGCGAGAG
ACAAGACAAGACACCACGCACCAAATCAGGCACAAACAAAAAAACCAAGC
CAGTTGTTGAACTACCAAAAGCCATTGCATTGCGTGCACGGTTCGGTGGT
GGTTGTACGGAGAAGAACAACACAAGAAAACGCCACCAATGAAGCCACAC
TAAATAAAGAGACCTAAAATATAAAATATAAAATAAAATAAAACACTTCC
AATGAAAAATCCGAACTCTCATCTACTGGCTAGGATGCAATGAGCGGTCA
ACGCCGGATCAGGGTGCGGCACTTGAGTTGACACTCGCAGAAGTCCGGTG
TACGTATCGGAAAACATCCTCTCGAGCGATAGAGCAGAGAAATCCACGCA
CACACCCCTTTCCGCCCATAAAGCACGCAAACGAGCACCCGGCGAGCAGG
CATACAACACGCCAAAAAAGA GCAACAACCACAACTACGCATGCAGCACC
CCGGTATATCTTGAGGACGTTCGAAAGCGAACATGGCATGGTACGCCAAA
AAAGAGCAACAACCACAACTACGCATGCAGCACCCCGGTATATCTTGAGG
ACGTTCGAAAGCGAACAGGGCATGGCATCCGCGGGTCGAACAGCACTCAC
TCGCAGCCCTCATCAATCGGAGGGTGAAAAAACGAAACACATTCATCAGT
TTTCTGATCACAGCGATGTAGCCAAATATCAATAGCACAAAATACACGAC
AGTTAACAGCTGGCTCCCGGCCAACAAAGATCTCCTCCTCCTTCACTGAG
TGGCACTCGTGCGAGGCGAATGACACAACGAACGATCCTGTCCCGCTGCC
TGCCTGCCTGCCCCGCCCCACAACCGAGAATTCTCATCATATTCCACCAA
CTTGTCCAACAGCAGCAAACAGAGTGCAGCAGCGGCAAAGCGTATCCTAC
AAAGGACAAAAGCCCCCAAAAGCACCCGTGGTCGCTGATGACGTTTACCC
GCCCCGCCCACCCCGCGGTCTATGAT back to top Coding sequence (CDS) from alignment at C-linearis_contig98:574857..582482+
>mRNA_C-linearis_contig98.17142.1 ID=mRNA_C-linearis_contig98.17142.1|Name=mRNA_C-linearis_contig98.17142.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at C-linearis_contig98:574857..582482+ (Chordaria linearis ClinC8C monoicous) back to top