mRNA_C-linearis_contig98.17131.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17131.1 vs. uniprot
Match: A0A6H5KRP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 6.730e-36 Identity = 199/501 (39.72%), Postives = 224/501 (44.71%), Query Frame = 3 Query: 2367 AGPSYSEVFEWDNERDALELKEIMIVERARERRKRLAKERARGQAVIQYLTKLQREERGRSNLLRAKGRILGDVARMLPERSAETSDLRHKISQTLSSSSGD----------------------TTKG-------------RXXXXXXXXXXXXXXXXXXXXXXXXXXADSMDVEGERNDERQGRKAL------------------------------------------------------------PPPIVSSVPGEAAA-DSEPDVHSRTVQSMLRCWNAVGERLAAARKVVTEVGM-------PVTNRAAVAAAATAAGGRQDGERRVKPKKIT--KGPRGMRTGAGGTGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPHQGP--GQAR--FRKRKLARILGXXXXXXXXXXXXXGRKAEXXXSGKRPESGGRAWAGAAAA--------ADVVPVERLKWPSTIVLRTPYDVPLLLSCLSTYPDKLAAALYPS 3518
+GPSY E+ EWD +RDALELKEIMI ER RERR+ L +E+A+GQAV+QYL KL+REERGRSNLLRAKG +L D+ARMLPER E +LR+KI + G + KG XXXXXXXXXXXXXXXXXXXXXXXXXX G G A P GE S PDVH+ T QSMLRCWNAVGERLAAARKVV EV G +DG +PK + KGPRG GG XXXXX P +G GQ R RKRK++R LG XXX ADVVP+ERL WPST++ RTPY VPLLLSCLSTYPDKLAAALYPS
Sbjct: 574 SGPSYGELMEWDAQRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLAKLEREERGRSNLLRAKGLMLADLARMLPERVKEVIELRNKIDKISQGLGGSXXXXXXXXXXXXXXXXXXXXECSVKGIAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAGASTPGSSACLDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFAATPSCGDDTSGEGLLLCSNPDVHALTAQSMLRCWNAVGERLAAARKVVREVNAGXXXXXXXXXXXXXXXXXXXXXGRAEDG----RPKGVGGGKGPRGGIRPTGGGXXXXXXXXKGGEAVDMDMDSDVSSCDESNNDNSPSRGAAHGQQRNATRKRKVSRELGPSNAASPFSNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVPMERLDWPSTVIPRTPYGVPLLLSCLSTYPDKLAAALYPS 1070
BLAST of mRNA_C-linearis_contig98.17131.1 vs. uniprot
Match: D8LJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU4_ECTSI) HSP 1 Score: 159 bits (402), Expect = 1.130e-35 Identity = 173/486 (35.60%), Postives = 200/486 (41.15%), Query Frame = 3 Query: 2367 AGPSYSEVFEWDNERDALELKEIMIVERARERRKRLAKERARGQAVIQYLTKLQREERGRSNLLRAKGRILGDVARMLPERSAETSDLRHKI---SQTLSSSSGDTTKG------RXXXXXXXXXXXXXXXXXXXXXXXXXXADSMDVEGERN----------------------------------------------DERQGRKALPPPIVSSVP---GEAAAD---------------------------------SEPDVHSRTVQSMLRCWNAVGERLAAARKVVTEVGM-------PVTNRAAVAAAATAAGGRQDGERRVKPKKIT--KGPRG--MRTGAGGTGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPHQGPGQARFRKRKLARILGXXXXXXXXXXXXXGRKAEXXXSGKRPESGGRAWAGAAAA--------ADVVPVERLKWPSTIVLRTPYDVPLLLSCLSTYPDK 3494
+GPSY EV EWD RDALELKEIMI ER RERR+ L +E+A+GQAV+QYLTKL+REERGRSNLLRAKG +L DVARMLPER E +LR+KI SQ L S + G + S EG N D +G ++ +V S+ GE A S PDVH+ T QSMLRCWNAV ERLAAAR VV EV +DG +P+ + KGPRG G GG G G + RKRK +R+LG XXXXXXXX XXX ADVVPVERL WPST++ RTPY VPLLLSCLSTYPDK
Sbjct: 279 SGPSYGEVMEWDARRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLTKLEREERGRSNLLRAKGLMLADVARMLPERVKEMIELRNKIDKISQGLGGSGTNDNNGXXXXXXKAGTAESSVEGTAAGTGSLAGEAKNKSKASRASEGSTNATANTQRTSPSSSGFDMASAGATTPGSSACSDGKDKGKGKARRRNDDNGKGGESAKSGVVDSMAEDEGEQEASXXXXXXXXXXXXXXFAATPSCGDDASGEGLLLGSNPDVHALTAQSMLRCWNAVRERLAAARNVVREVNAGXXXXXXXXXXXXXXXXXXXXXXXAEDG----RPRGVGGGKGPRGGIRPAGGGGRARSRKGGEAVDMDVDSDVSSCDESNNDNSPPRGAAHGQQRNATRKRKASRVLGPSNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVPVERLDWPSTVIPRTPYAVPLLLSCLSTYPDK 760 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17131.1 >prot_C-linearis_contig98.17131.1 ID=prot_C-linearis_contig98.17131.1|Name=mRNA_C-linearis_contig98.17131.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1185bp MSDPNNNVPIQSGPPSSHPQQAPPARPGGLIYQPSLGLGGQQQRSVGGVMback to top mRNA from alignment at C-linearis_contig98:455975..467772- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17131.1 ID=mRNA_C-linearis_contig98.17131.1|Name=mRNA_C-linearis_contig98.17131.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11798bp|location=Sequence derived from alignment at C-linearis_contig98:455975..467772- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:455975..467772- >mRNA_C-linearis_contig98.17131.1 ID=mRNA_C-linearis_contig98.17131.1|Name=mRNA_C-linearis_contig98.17131.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7110bp|location=Sequence derived from alignment at C-linearis_contig98:455975..467772- (Chordaria linearis ClinC8C monoicous)back to top |