mRNA_C-linearis_contig98.17120.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: D7FMR1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR1_ECTSI) HSP 1 Score: 1134 bits (2934), Expect = 0.000e+0 Identity = 1124/2184 (51.47%), Postives = 1216/2184 (55.68%), Query Frame = 1 Query: 2026 LWPTTAAGRGDGLPETEGGWGHVDTNGLLKEDEEGDKGGAKARARSEATLAGGPGASSCWAGRGEGEDGEFRCDGGLGLESAPAAEG---------EKADHDHDRVVIDLD---ADEVGDGSNIDTLGDADNVGGLPGEMSLYLAGARFDHYAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSGGEAVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEDVDVXXXXXDGVDDVDDGDSFGLQDDASFEQSWDDLVEGVADEGVLHAHGRAGLPDPTHDDTGIDAGTDALLEEAMSGDSIGDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHESSCEEPEGKFPPQQSPTLALAPLASQGNNGNGXXXXXXGQTLLSALAQAIGAREGASPELLGHFVRAGGGDVGKAASLYLAMADEFVELRAMARRRXXXXXXXXXXXXXXXXXXAAVGATTASPGPEQPAAPLXXXXXXXXXXXXSSARPADGGGXXXXXXXXXXXXSTAGGDGTSPEREGDPPSSFATPALGGRNDGGGGCLPSPGEVGEAGPRPGAGEQHDQGQDQELQPQALDEDFPSFEADPADLDSGRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTKNSSHFEVIELLRVANRPLTLRLRREEESRQAQLTRLLLEFSGLLERDWCRARRDEHRHGQNGIHGDGSVGNPGGGXXXXXXXXXXXXRRIENMGVLLEQLAPLLDWDSESVAAVEPELRELLCVLLDADLRFDLSSSKYPHIVGGAVAAILQEDLALGVHRRKLCDPAPGMVSKRPRIQAPALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAGVADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGAPDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILLGFAMSGYAEQQPASPPPA------AESAPSXXXXXXXXXXXXXLGESKSGGEEETESVPCPSRAPEEGGAGSPVVES-NSVGDVKSSGQSARE--AEQEERPVV----VEGSAVSSREKTE-GKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASEVRHAGSVGVXXXXXVRGRLTQAGQKARKGILGALMPAAACLVDDPAAEVRGTTAVTLGEMLRLMVGFEDYVATLGSSARKPSAPLTPIGNGHGRVVGATVGGAGEGASTAVARGGADGNGGSSGTGIYGGGSMETCCCVTEQDEDEGGYEAEDSGDGYVGQRRRVCHGRVMQAAMAXXXXXXXXXXEAAMTAELIDLAGFEGMGDEDEGMDGGIGIGEDAGSITFGGELQQXXXXXXXXG-------VMEGLPFAKHDGVEAGGQELVSLCDSTATATAVLEDGA-ERGEGAGCADVETPAAQEXXXXXXSSEERSSERSRDDRPVPPGTDSGDASAPAA----EFTTGPEDWAPATQHSGGTSRDDARAAGTIESGHPEGGEATVASEFNPVRGCDGAEVE-----------------TAEER-------DDRXXXXXXXGSLDSNDAVNGRDDLGEDAEAQEALPAGSSAPAVGTXXXXXXXXXXXDNGIGMVGSNSGSNSNSDPLIVLVTRLLLDADANVACTMLQALRPGETESGSPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVPRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNRLRDEVLNLGRRMLLDQVDAVRRSAAEQLIMAARIDLDRCQHRLLHHVPGSCSRQSG-LPALASSAPLSPPVXXXXXXXXXXRAGVPTRGGLVAGLGSTSLIGFEKGNDSATFAAADSEEASGEGGSQAGGSVGGVDAAAVAAKSPVGXXXXXXEDTGGGHGVAEDRIEEPLGGLVAAAATAGEGKTSPPSPSSPGRQIGGAAGEDEGRVEPLDRAGSCGLWLRLVMMPLVVECLEGSYRTKLLALHMAQAAFRLGVTTPAVMSAVIVPVLLRGLCDHLPN 8388
LWP T GRG+G+PE EGGWGHVDTNGLL ED++ E G P E +G LGL AP + + D D V+IDL+ A+EV G + LPG LYLAG R DHYAAA +GG+ V XXXXXXXXX GDSFG QDDA+F QSWDDLVEGVADEGVLH HGRAGLPDP TDALLEE S D A E + EE EG FPPQ+ P+ ++G G TL+ A+A+AIGAR GAS ELLGHF+RAGGGDV KAASLY MADEFVELR MARRR XXXXXXXXXXXXX XXXXXXXXXXXX XXXXXXXXXXXX A E Q QD +L PQ LD DFPSFEADP DL +GRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTKNSSHFEVIELLRVANRPLTLRLR EEE Q + RLLLEFSGLLERDWCRARRDE + GQN DGS GNPG XXXXXXXXX RRIENMGVLLEQLAPLLDW+SE+VAAVEPELRELLCVLLDADLRFDLSS+KYPH VGGAVAAILQE + G+ L P + RP + PALA RL LSNSVCARGACCALVAQTYS+PPLPRQLQ RGILSRLLHDRTPGVRGEAVKALALVA VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRL+G E++ R+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RE HALRCKVMPIL+RLAGD DWQVRVEIACRLDSLCVALGEQWSVVT +ILPALVAD DPDVRCEAIRCLPRLARILLGFAMSGYAEQ A SA XXXXXXXXXXXXX E+ PS P AG ++ + D + +S+R+ E++P EG SS +E G+ XXXXXXX XXXXXXXXXXXXXXXXXX +G G VRGRLT AG+KARKGILGALMPAA CL+DDPAAEVRGT AVTLGEMLRLMVGFEDYVATL S+AR + +GG A D G G RRRVCHGR M+AA+AXXXXXXXXXXEAAMTAELIDLAGFE GD G D G+ +DA S G Q G V+ GLPFAKHD V+AGG+ELV+LC+ A +LEDG +R E VETPA XXXXXX DD PP + S AP + + +T P D+ DD G G E V T +ER D GSL S+DAVNG DDLGE A P ++ XXXXXXXXXXX IVLVTRLLLDADANVACTMLQ G +G G XXXXXXXXXXXXXXX T V RRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCN LRDEVL+L RRML D+VDAVRRSAAEQLIMAARIDLDRC RLLHHVPG+C Q G LP+L+SS S V AG + G LV L G E+ AT XXXXXX E GG A G G GGA E EP DRAG+CGLWLRLV++PLVVECLEGSYRTKLLALHM QAAFRLGVTTPAVMS+V+VPVLLRGL D LP
Sbjct: 343 LWPATT-GRGEGIPEAEGGWGHVDTNGLLHEDDD---------EEFEKKGRGAPEGGIXXXXXXXXXXXEGIVNGDLGLGMAPLSVSPLKGGGRHRDAGDADGLPVLIDLEEEGAEEVSGGDDE-----------LPGARKLYLAGGRGDHYAAAAAST-----------------------------AGGKGVVDETGDXXXXXXXXX--------------------------------------GDSFGGQDDATFGQSWDDLVEGVADEGVLHGHGRAGLPDPLE--------TDALLEEGRS-----DPAAPPPPDGSGGVGGADVMASDGRF-------------ERAGEEQEGGFPPQEQEQ----PVPGASSSG-------LGPTLVGAMAEAIGARRGASLELLGHFLRAGGGDVEKAASLYATMADEFVELREMARRRHIRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------XXXXXXXXXXXXXXXXAQEVEGQ-QDDQLLPQELDVDFPSFEADPTDLATGRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTKNSSHFEVIELLRVANRPLTLRLRPEEE--QGSIVRLLLEFSGLLERDWCRARRDEPQ-GQNAT--DGS-GNPG--XXXXXXXXXTAGRRIENMGVLLEQLAPLLDWESEAVAAVEPELRELLCVLLDADLRFDLSSTKYPHFVGGAVAAILQESRS-GIESLPLI-PIKSCRTSRPLSKPPALAQRLVLSNSVCARGACCALVAQTYSVPPLPRQLQFRGILSRLLHDRTPGVRGEAVKALALVAAVADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLVGVLGESTPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------REGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTAEILPALVADIDPDVRCEAIRCLPRLARILLGFAMSGYAEQXXXXXXXXXXXXXXARSALGXXXXXXXXXXXXXXXXXXXXXXLGEEAFLVPSPVPPAAEAGGDSGKTYHGYTDANDADRSSRDETGAPEQQPARDDAGTEGQRSSSAVASESGQIGXXXXXXXTAGAATGADDSGVVGETGGDXXXXXXXXXXXXXXXXXXXXXXXXXSGYQG-----GVRGRLTLAGRKARKGILGALMPAAGCLIDDPAAEVRGTAAVTLGEMLRLMVGFEDYVATLASTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXDSDGGDGAVDVGFG-PRPRRRVCHGRAMRAAVAXXXXXXXXXXEAAMTAELIDLAGFETAGD---GSDRTAGL-DDADSKGAAGAAVQVMAPTTSGGEQQGEGEVVGGLPFAKHDDVDAGGRELVALCEPAA----LLEDGGGDRSEEG----VETPAEXXXXXXXXXXXXX-----XDDYLPPPRSLSAAGDAPVSVSLEDDSTPPPDY------------DDVLRGRDRAGGGSAGAERLVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPDERLDLSLRDDHDEEDCGGGGSLGSDDAVNGCDDLGEPLLPSNA-PGATAVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLVTRLLLDADANVACTMLQVA--GGEATGCVG--TGDAGDGQGHEGLAVGGGDCADQGGEFRECGXXXXXXXXXXXXXXXXTPVLRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNLLRDEVLHLSRRMLFDRVDAVRRSAAEQLIMAARIDLDRCPLRLLHHVPGACPGQDGGLPSLSSSP--SAAVAAVTTAGVAPDAGAGSAGSLVV-----PLKGEEESPQLATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-SGGAPAGDCLDVSG----------GGDGGGARSEGVPVEEPWDRAGACGLWLRLVVVPLVVECLEGSYRTKLLALHMTQAAFRLGVTTPAVMSSVVVPVLLRGLRDPLPK 2278
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A6H5KXG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG2_9PHAE) HSP 1 Score: 723 bits (1866), Expect = 6.620e-221 Identity = 701/1430 (49.02%), Postives = 767/1430 (53.64%), Query Frame = 1 Query: 4498 IQAPALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAGVADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGAPDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILLGFAMSGYAEQQPA-------------------SPPPA----AESAPSXXXXXXXXXXXXXLGESKSGGEEETESVPCPSRAPEEGGAGSPVVESNSVGDVKSSGQSAREAEQEERPVV----VEGSAVSSREKTEGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASEVRHAGSVGVXXXXXVRGRLTQAGQKARKGILGALMPAAACLVDDPAAEVRGTTAVTLGEMLRLMVGFEDYVATLGSSARKPSAPLTPIGNGHGRVVGATVGGAGEGASTAVARGGADGNGGSSGTGIYGGGSMETCCCVTEQDEDEGGYEAEDSGDGYVG------QRRRVCHGRVMQAAMAXXXXXXXXXXEAAMTAELIDLAGFEGMGD--------EDEGMDGGIGIGEDAGSITFGGELQQXXXXXXXXGVMEGLPFAKHDGVEAGGQELVSLCDSTATATAVLEDGA-ERGEGAGCADVETPAAQEXXXXXXSSEERSSERS-RDDRPVPPGTDSGDASAPAA----EFTTGPEDWAPATQH---SGGTSRDDAR---AAGTIESGHPEGGEATVASEFNPVRGCDGAEVETAEERDDRXXXXXXXGSLDSNDAVNGRDDLGEDAEAQEALPAGSSAPAVGTXXXXXXXXXXXDNGIGMVGSNSGSNSNSD------PLIVLVTRLLLDADANVACTMLQALRPGETESGSPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------------------------------------TLVPRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNRLRDEVLNLGRRMLLDQVDAVRRSAAEQLIMAARIDLDRCQHRLLHHVPGSCSRQSG-LPALASSAPLSPPVXXXXXXXXXXRAG------VPTRGG-----LVAGLGSTSLIGFEKGNDSATFAAADSEEASGEGGSQAGGSVGGVDAAAVAAKSPVGXXXXXXEDTGGGHGVAEDRIEEPLGGLVAAAATAGEGKTSPPSPSSPGRQIGGAAGEDEGRVEPLDRAGSCGLWLRLVMMPLVVECLEGSYRTKLLALHMAQAAFRLGVTTPAVMSAVIVPVLLRGLCDHLPNVRLSAARVADDILSVAAISSWP 8454
++APALAHRLALSNSVCARGACCALVAQTYS+PPLPRQLQ RGILSRLLHDRTPGVRGEAVKALALVA VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGH L+G E + R XXXXXXXXXXXXXXXXXX E HALRCKVMPIL+RLAGD DWQVRVEIACRLDSLCVALGEQWSVVT +ILPAL+ADTDPDVRCEAIRCLPRLARILLGFAMSGYAEQ +P PA + XXXXXXXXXXXXX E+ G E P P A G +G D SS + A E++PV EG SS +E XXXXXXXXXX X XXXX +++ +G VRGRLT AG+KARKGILGALMPAAACLVDDPAAEVRGT AVTLGEMLRLMVGFEDYVATL S+AR S+ + AG D GDG V RRRVCHGR M+AA+AXXXXXXXXXXEAAMTAELIDLAGFE GD +D G G + T G QQ V+ GLPFAKHD V AGG ELV+ C+ +LEDG +R E VETPA ++ SSE+RS ERS R D PP + AP + + +T P D+ + +GG S R +G XXXXXXX +DAVNG DDL E LP+ ++ XXXXXXXXXXX PLIVLVTRLLLDADANVA TMLQALRPG PG XXXXXXXX G T V RRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCN LRDEVL+L RRML D+VDAVRRSAAEQLIMAARIDLDRC RLLHHVPG+C Q G LP+L+S XXXXXXXXXX VP RG L G K+P G ++GG A D ++ GG G+G GGA E EP DRAG+CGLWLRLV++PL+VECLEGSYRTKLLALHM QAAFRLGVTTPAVMS+V+VPVLLRGL D LPNVRLSAARVADDILSVAA+SSWP
Sbjct: 20 LEAPALAHRLALSNSVCARGACCALVAQTYSVPPLPRQLQFRGILSRLLHDRTPGVRGEAVKALALVAAVADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHHLVGVLGETTPRQXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTTEILPALIADTDPDVRCEAIRCLPRLARILLGFAMSGYAEQXXXXXXXXXXXXXXXXXXXXXMAPDPARSALGDXXXXXXXXXXXXXXXXXXXEAVPGDEAFVVPSPVPPAAEAGGESGETHDGYTDANDADSSSRDETGAP-EQQPVRSDAGTEGPRSSSAVASESGQXXXXXXXXXXTAGAATGADDSGVVGHTGGDGXEVXXXXADAPPGGRMSAAAEGSGD---GYQGGVRGRLTLAGRKARKGILGALMPAAACLVDDPAAEVRGTAAVTLGEMLRLMVGFEDYVATLASTARTTSSRVR----------------AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDDGDGTVDVGFGPRPRRRVCHGRAMRAAVAXXXXXXXXXXEAAMTAELIDLAGFETAGDGGDRTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGE-----VVGGLPFAKHDDVNAGGGELVAFCEPAV----LLEDGGGDRSEEG----VETPAGKD------SSEKRSEERSSRSDDLPPPRSLGATGDAPVSVSLDDDSTPPPDYDDVLRGRDGAGGGSTGAERLVDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAVNGCDDLRE-----PLLPSNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIVLVTRLLLDADANVARTMLQALRPGWVPELGPGPGPKPYRPISXXXXXXXXTGGETPPSYVEVAGGEANGGMGTGDAGDGQGHEGLGVGGGDGADRGGEFREGEGXXXGGXXXXXXXXXXXXTPVLRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNLLRDEVLHLSRRMLFDRVDAVRRSAAEQLIMAARIDLDRCPLRLLHHVPGACPGQDGGLPSLSSXXXXXXXXXXXXXXXXXXXXXXXXXLVVPPRGEGESPPLATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKTPGGE-----RESGGAP--ARDCLDV-CGG--------GDG--------------GGARSEGVHVEEPWDRAGACGLWLRLVVVPLMVECLEGSYRTKLLALHMTQAAFRLGVTTPAVMSSVVVPVLLRGLRDPLPNVRLSAARVADDILSVAAMSSWP 1358
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A6H5L3J4_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J4_9PHAE) HSP 1 Score: 305 bits (780), Expect = 8.190e-80 Identity = 419/1241 (33.76%), Postives = 450/1241 (36.26%), Query Frame = 1 Query: 2026 LWPTTAAGRGDGLPETEGGWGHVDTNGLLKEDEEGDKGGAKARARSEATLAGGPGASSCWAGRGEGEDGEFRCDGGLGLESAPAA----EG-----EKADHDHDRVVIDLD---ADEVGDGSNIDTLGDADNVGGLPGEMSLYLAGARFDHYAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSGGEAVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEDVDVXXXXXDGVDDVDDGDSFGLQDDASFEQSWDDLVEGVADEGVLHAHGRAGLPDPTHDDTGIDAGTDALLEEAMSG------DSIGDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHESSCEEPEGKFPPQQSPTLALAPLASQGNNGNGXXXXXXGQTLLSALAQAIGAREGASPELLGHFVRAGGGDVGKAASLYLAMADEFVELRAMARRRXXXXXXXXXXXXXXXXXXAAVGATTASPGP---------EQPAAPLXXXXXXXXXXXXSSARPA------DGG----------------------------------------------GXXXXXXXXXXXXSTAGGDGTSPEREGDPPSSFATPALGGRNDGGGGCLPSPGEVGEAGPRPGAGEQHDQGQDQELQPQALDEDFPSFEADPADLDSGRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTK------------NSSHFEVIELLRVANRPLTLRLRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EE---------------ESRQAQLTRLLLEFSGLLERDWCRARRDEHRHGQNGIHGDGSVGNPGGGXXXXXXXXXXXXRRIENMGVLLEQLAPLLDWDSESV------AAVEPELRELLCVLLDADLRFDLSSSKYPHIVGGAVAAILQE 4425
LWP T GRG+G+PE EGGWGHVDTNGLL+ED+E E G P C G E DG LGL AP + EG + D D V+IDL+ A+EV G G LPG LYLAG R DHYAAA A +GG+ V G D X DDGD FG QDDA+ QSWDDLVEGVADEGVLH HGR GLPDP TDALLEE S D G G E +G +PPQ+ L+S GQTL+ A+A+AIGAR GAS ELLGHF+RAGGGDV KAASLY MADEFVELR MARR XXXXXXXXXXXXXXXXXX PAA + + RP D G XXXXXXXXXXX + AG G+ SS P P EV EA QD +L PQ LD DFPSFEADP DL +GRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTK NSSHFEVIELLRVANRPLTLRLRR EE E Q + RLLLEFSGLLERDWCRARRDE + GQN G G XXXXXXXXX RRIENMGVLLEQLAPLLDW+SE+V AAVEPELRELLCVLLDADLRFDLSS+KYPH VGGAVAAILQE
Sbjct: 418 LWPATT-GRGEGIPEAEGGWGHVDTNGLLQEDDE----------DFEKKGRGAPEGGICSRSGGXXXXXEGIVDGDLGLGMAPLSVSPLEGGGRHRDAGDADGFPVLIDLEEEGAEEVSGGD-----------GELPGARKLYLAGGRGDHYAAAA------------------------------ATAGGKGVV-----------------------------DETGDSDXXXXR---------DDGDPFGDQDDATLGQSWDDLVEGVADEGVLHGHGRDGLPDPLE--------TDALLEEGRSDPAAPPPDGSGGVGGADVMASDGRF--------------------------ERAGEVQGDYPPQEKEQPVPGVLSSS-----------LGQTLVGAMAEAIGARRGASLELLGHFLRAGGGDVEKAASLYTTMADEFVELREMARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHPAAEVAIEEGALEAALADAPRPGGSEEEQDRGEKFETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNVAGEIGSE--------SSXXXXXXXXXXXXXXXXXPPPAEVVEA------------QQDDQLLPQELDVDFPSFEADPTDLATGRDEYSVTISSQKLGMTVENVLERTVVRAAAPGGGAEAAGVETGSLLVALDGQSTKVPNGGGRSIERWNSSHFEVIELLRVANRPLTLRLRRVGRERLLRRRAEMRALTRPHGVFGGALNGQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPSLRGKMRRQDSFPLGDSRREAGGSSSVTGSCSGEAGRGQGNNGPGRSGRAPGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGVAGNWEAVEWAESCLLTSVVAAAADVRRRQQHCRAEACAAATITAAAPAFVPGEAAGIVPSATPAVDEEAAAKESGXXXXXXXXXDSLGKNSAGXXXXXXXIGGQDESASCATATEAGRDADKLPSPKVGDGEPAAGPPNMQAAGVVGNGSGQRGGFEESWRGEHGGGGGDGLPEEEQGSIVRLLLEFSGLLERDWCRARRDEPQ-GQNTADGSGXXX-----XXXXXXXXXTASRRIENMGVLLEQLAPLLDWESEAVSIIEAVAAVEPELRELLCVLLDADLRFDLSSTKYPHFVGGAVAAILQE 1497
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: B7G8Q5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8Q5_PHATC) HSP 1 Score: 115 bits (289), Expect = 1.030e-21 Identity = 83/253 (32.81%), Postives = 119/253 (47.04%), Query Frame = 1 Query: 4510 ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDAR----RETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
A+ HRLA S S+ AR C+L + P QLQLRG+++R LHD VR L VA V D+ V WL+L+ ERA D + +R A++ + L A D + +RR +PD + + L+CK++P+ RLA D VR+ +A + D LC ALG+ WS V +D+L A+++D D VRCEA+ C+PRLA I+L
Sbjct: 961 AVVHRLAASRSMSARITACSLGPVIWGHLDFPHQLQLRGVVTRALHDVEVIVRKATATVLHEVAELVFDSRCVPWLVLMCERAMTDPEPQLRSAAMTLTWHLAEHLPNAFLGDASQGSAYLRR------------------------------------------LPDRNDPIFADVYLLQCKLLPVATRLAEDRSPSVRLAVAAQCDRLCYALGDHWSSVVIDVLLAMLSDADERVRCEAVLCVPRLADIVL 1171
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A1Z5JV25_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JV25_FISSO) HSP 1 Score: 114 bits (286), Expect = 1.900e-21 Identity = 107/367 (29.16%), Postives = 153/367 (41.69%), Query Frame = 1 Query: 4273 LLDWDSESVAAVEPELRELLCVLLDADLRFDLSSSKYPHIVGGAVA--AILQEDLALGVHRRKL----CD--PAPGMVSKRPRIQAP-------------------------------ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
L D S A + EL LLC +LD D +LS + G + A DL KL C +PG S+ R P A+ HRLA S S AR C+L + P QLQLRG+++R LHD VR K L +A V D +V WL+L+ ER+ D + +R A++ + L A D + +RR + + + P E + L+CK++P+ RLA D VR+ +A + D LC ALG WS V +D L AL++D+D VRCEA+ C+PRL++I++
Sbjct: 745 LADTTSPPAALLRGELISLLCDILDIDTEMELSEEEALSATAGRTSQEAGAINDLGTAGSLLKLIVLSCPIMKSPGCDSESGRPLDPEMEAELRRRFGSKGEVSSSDIHRLHAGNRFLAVVHRLAASRSTSARITACSLGPVLWGHLDFPHQLQLRGVITRALHDVDVMVRKATAKVLHEIAELVFDPRSVPWLVLMCERSMTDPEPHLRSAAMTLTWHLAEHLPNAFLGDASQGSRYLRR-------------------------------------LPSRDDPTFA-EVYLLQCKLLPVATRLAEDRSPSVRLSVAAQCDRLCDALGAHWSSVVIDTLLALLSDSDERVRCEAVACVPRLSQIVM 1073
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A1Z5K9H7_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9H7_FISSO) HSP 1 Score: 114 bits (286), Expect = 2.230e-21 Identity = 106/368 (28.80%), Postives = 152/368 (41.30%), Query Frame = 1 Query: 4273 LLDWDSESVAAVEPELRELLCVLLDADLRFDLSSSKYPHIVGGAVA--AILQEDLALGVHRRKL------------CDPAPGMVSKRPRIQAP--------------------------ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
L D S A + EL LLC +LD D +LS + G + A DL KL CD G P ++A A+ HRLA S S AR C+L + P QLQLRG+++R LHD VR K L +A V D +V WL+L+ ER+ D + +R A++ + L A D + +RR + + + P E + L+CK++P+ RLA D VR+ +A + D LC ALG WS V +D L AL++D+D VRCEA+ C+PRL++I++
Sbjct: 746 LADTTSPPAALLRGELISLLCDILDIDTEMELSEEEALSATAGRTSQEAGAINDLGTAGSLLKLIVMSCPIMKSPGCDSESGRPLD-PELEAELRRRFGSKGELSSSDIHRLHAGNRFLAVVHRLAASRSTSARITACSLGPVLWGHLDFPHQLQLRGVITRALHDVDVMVRKATAKVLHEIAELVFDPRSVPWLVLMCERSMTDPEPHLRSAAMTLTWHLAEHLPNAFLGDASQGSRYLRR-------------------------------------LPSRDDPTFA-EVYLLQCKLLPVATRLAEDRSPSVRLSVAAQCDRLCDALGAHWSSVVIDTLLALLSDSDERVRCEAVACVPRLSQIVM 1074
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A7S1GI33_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI33_CYCTE) HSP 1 Score: 110 bits (275), Expect = 2.490e-21 Identity = 82/249 (32.93%), Postives = 115/249 (46.18%), Query Frame = 1 Query: 4510 ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
A+ HRLA S S+ AR C+L + P QLQLRG+++R LHD VR L +A V D+ AV WL+L+ ERA D + +R A++ + L A D + VRR + P E + L+CK++P+ RLA D VR+ +A + D LC ALG+ W V +D+L AL+ D D VR EAI C+PRL ++L
Sbjct: 84 AVVHRLAASRSISARITACSLGPVLWGHLDRPHQLQLRGVITRALHDVDVMVRKSTAAVLHEIAELVFDSRAVPWLILMCERAMTDPEPQLRAAAMTLTWHLAEHLPNAFLGDASQGSRSVRR-------------------------------------LPPKTDP-TYAEVYLLQCKLLPVATRLAEDRAPAVRLAVAAQCDRLCNALGDHWYSVIIDVLQALLGDGDERVRGEAILCVPRLTEVVL 294
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A7S0UH36_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH36_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.690e-21 Identity = 104/364 (28.57%), Postives = 151/364 (41.48%), Query Frame = 1 Query: 4249 VLLEQLAPLLDWDSESVAAVEPELRELLCVLLDADLRFDLSSSKYPHIVGGAVAAILQEDLALGVHRRKL---CDPAPGMVSKRPRIQAP-------------------------ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
VL + L D S A + EL LC +LDAD LS G A + + A G + + C M +R R ++ A+ HRLA S S AR C+L +S P QLQLRG+++R LHD VR L +A V D+ V WL+L+ ERA D + +R A++ + L A D + +RR ++ + + L+CK++P+ RLA D VR+ +A + + LC ALG+ WS V +D+L AL+ D+D VR EA+ C+PRLA I+L
Sbjct: 30 VLQRMMTFLADPKSPPAAMLRGELIACLCDILDADTEMKLSDEDNMSSAQGEGAGPIADLGAAGSLLKLIILNCTVMRTMECERQRSKSRKAKEESGETKEDDSALTLHAGNRFLAVVHRLAASRSTSARITACSLGPVLWSRLDFPHQLQLRGVITRALHDVEVIVRKSTATVLHEIAELVYDSRCVPWLVLMCERAMTDPEPQLRSAAMTLTWHLAEHLPNAFLGDASKGSRYLRRLPSREDPIFA--------------------------------------DVYLLQCKLLPVATRLAEDRAPHVRLAVAAQCERLCDALGDHWSSVIIDVLVALLTDSDERVRGEAVLCVPRLADIVL 355
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A7S1VWL7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VWL7_9STRA) HSP 1 Score: 112 bits (280), Expect = 9.950e-21 Identity = 83/249 (33.33%), Postives = 115/249 (46.18%), Query Frame = 1 Query: 4510 ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
A+ HRLA S S+ AR C+L + P QLQLRG+++R LHD VR L +A V D+ AV WL+L+ ERA D + +R A++ + L A D + +RR + P E + L+CK++P+ RLA D VR+ +A + D LC ALG+ W + VD+L AL +D D VR EAI C PRLA I+L
Sbjct: 586 AVVHRLAASRSISARVTACSLGPVLWGHLDFPHQLQLRGVITRALHDVDVIVRKATATVLHEIAELVFDSRAVPWLVLMCERAMTDPEPQLRAAAMTLTWHLAEHLPNAFLGDASQGSRSLRR-------------------------------------LPPRTDPTFA-EVYLLQCKLLPVATRLAEDRAASVRIAVAAQCDRLCSALGDHWYNIIVDVLQALFSDADERVRGEAILCFPRLAEIVL 796
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Match: A0A1E7FMC6_9STRA (ARM repeat-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMC6_9STRA) HSP 1 Score: 109 bits (273), Expect = 6.620e-20 Identity = 80/249 (32.13%), Postives = 118/249 (47.39%), Query Frame = 1 Query: 4510 ALAHRLALSNSVCARGACCALVAQTYSLPPLPRQLQLRGILSRLLHDRTPGVRGEAVKALALVAG-VADASAVRWLLLLGERASLDIDLSVRRASVDSLLQIGHRLLGA--PDEASTRTGVRRDGQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDTNNMPDARRETHALRCKVMPILLRLAGDTDWQVRVEIACRLDSLCVALGEQWSVVTVDILPALVADTDPDVRCEAIRCLPRLARILL 5247
A+ HRLA S S AR C+L +S P QLQLRG+++R LHD VR L +A V D+ V WL+L+ ERA D + +R A++ + L A D + +RR ++ + + L+CK++P+ RLA D VR+ +A + + LC ALG+ WS V +D+L AL++D+D VR EA+ C+PRLA I+L
Sbjct: 620 AVVHRLAASRSTSARITACSLGPVLWSRLDFPHQLQLRGVITRALHDVEVIVRKSTATVLHEIAELVYDSRCVPWLVLMCERAMTDPEPQLRSAAMTLTWHLAEHLPNAFLGDASKGSQYLRRLPSREDPIFA--------------------------------------DVYLLQCKLLPVATRLAEDRAPHVRLAVAAQCERLCDALGDHWSSVIIDVLVALLSDSDERVRGEAVLCVPRLADIVL 830 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17120.1 >prot_C-linearis_contig98.17120.1 ID=prot_C-linearis_contig98.17120.1|Name=mRNA_C-linearis_contig98.17120.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2776bp MSDIITEAMREDDGGVEQRQVETSSVVATATGALATVAEGAAAAAAAAAGback to top mRNA from alignment at C-linearis_contig98:297160..316036+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17120.1 ID=mRNA_C-linearis_contig98.17120.1|Name=mRNA_C-linearis_contig98.17120.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=18877bp|location=Sequence derived from alignment at C-linearis_contig98:297160..316036+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:297160..316036+ >mRNA_C-linearis_contig98.17120.1 ID=mRNA_C-linearis_contig98.17120.1|Name=mRNA_C-linearis_contig98.17120.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=16656bp|location=Sequence derived from alignment at C-linearis_contig98:297160..316036+ (Chordaria linearis ClinC8C monoicous)back to top |