mRNA_C-linearis_contig98.17118.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: D7G9J1_ECTSI (Chromosome 10 open reading frame 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J1_ECTSI) HSP 1 Score: 233 bits (594), Expect = 7.420e-68 Identity = 177/277 (63.90%), Postives = 194/277 (70.04%), Query Frame = 3 Query: 648 MASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGARGDGKSTGKRRNSDGTSVSSR---GGDSTRGEENIEDDL-EGHDLVRRAVAXXXXXXXXXXXXXXXXSAKKRTRPSRWGDKINQSQEGAAAATAKSDGGSGSSGVATGSGGAVGDEAARQAWAGELERDRTAEDDMDDYLSSLLL 1466
MA+KYYKLLFKEYALADLSRYREDKVGLRWRTE+DVVSGKGQFECGALRCQERKDLHSYELNF+YKEAG VKNELVKVRVCPQCARKLFRKKIEALRR+ XXXXXXXXXXXXXXXXXXXXXXXXXX +S SVS+ D G + E EGHDL+R+AVA AKKR RPSRWGD+++ S+ A GD+A+R+AWAGELERDRTAED+MDDYLSSLLL
Sbjct: 1 MAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQRKAXXXXXXXXXXXXXXXXXXXXXXXXXX---------------SSPSGSVSATPDGNADDRHGRKLRETSAGEGHDLIRQAVAAAGGTQT---------DAKKRNRPSRWGDRLDSSERTAXXXXXXXXXXXXXXXXXXAM---AGDDASRKAWAGELERDRTAEDEMDDYLSSLLL 250
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: L8GSW9_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW9_ACACA) HSP 1 Score: 157 bits (398), Expect = 5.320e-40 Identity = 82/173 (47.40%), Postives = 115/173 (66.47%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKK 923
MNAY RHQ IR+Y Y+ K+P A+ KP +D++ L++Q+RF+R +E+D A+ AWE R+A +YY+ L++EY +ADL+RYRE +VG+RWR E++V+ GKGQF CG C+ ++DL SYE+NF+Y EAG KN LVK+R+CP CA KL KK
Sbjct: 1 MNAYERHQRYIRDYVLYYGRGKLP---AVPQKPT-----KSDDDILKQQYRFIRTEEDDR----------ADDSREAWEKRLARRYYERLYREYCIADLTRYREGQVGMRWRVEKEVIIGKGQFICGNKHCEAKEDLKSYEVNFQYAEAGETKNALVKLRLCPPCAYKLNYKK 155
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A7S1SWE2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWE2_9CHLO) HSP 1 Score: 150 bits (378), Expect = 2.520e-38 Identity = 86/180 (47.78%), Postives = 116/180 (64.44%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQL-TDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRR 941
+NAY RH++ + +Y ++ K+PS PG + TD ++++ HRF+R +E+D K L WEV++A KYY LFKEY LADLSRY+E K+G+RWRTE++VVSGKGQF CG +C R+ L SYE+NF YKEAG K LVK+RVCP+CA KL + +A RR
Sbjct: 12 LNAYERHKKFVHDYLTFY-GGKLPSR-------EPGDATVKTDWDSVKEHHRFLRSEEDD------KEL--------TWEVKLARKYYAKLFKEYCLADLSRYKESKIGMRWRTEKEVVSGKGQFVCGNKQCGNRQGLGSYEVNFGYKEAGEHKQALVKLRVCPECADKLNYNRKKAYRR 169
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A5J4XDC7_9CHLO (FRA10AC1 domain-containing (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC7_9CHLO) HSP 1 Score: 150 bits (379), Expect = 8.320e-38 Identity = 86/177 (48.59%), Postives = 110/177 (62.15%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEAL 935
++A+ RHQ L++N +Y+ P ++ TD + L+ Q+RFVR E+D +W+VRMA +YY LFKEYA+ADLSRYRE KVGLRWRTER+VV GKGQF CGA C ER+ L SYE+NF YKEAG K LVKVRVCP+ A +L K+ + L
Sbjct: 25 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDD--------------STDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 177
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A8K1C360_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C360_PYTOL) HSP 1 Score: 150 bits (379), Expect = 3.140e-37 Identity = 91/175 (52.00%), Postives = 112/175 (64.00%), Query Frame = 3 Query: 414 YARHQELIRNYH--RYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEA 932
+ RHQEL+R Y H +A A + +P D +ALRR +F+RD EED + +G E W+VRM+ +YY+ LF+EYALADLSRY E K+GLRWRTE++VVSGKGQF CG RC ER+ LHSYEL F Y E G K LVKVR C CARKLF KK++A
Sbjct: 25 HERHQELMRVYQDATQHEHAD-----ATDVRPE-------DLDALRRNFQFIRDDEEDIK----RGSED-------WQVRMSVRYYRQLFREYALADLSRYEEGKIGLRWRTEQEVVSGKGQFSCGNKRCDERRRLHSYELLFAYVEQGEKKRCLVKVRACEACARKLFYKKLKA 176
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A7S2WRJ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRJ6_9STRA) HSP 1 Score: 149 bits (376), Expect = 4.450e-37 Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 3 Query: 522 LTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKL 911
+TD++ LR+ HRFV E+ L G E ++WE RM+ KYYK LFKEYALAD+SRYRE K+GLRWRTE++VV GKGQF CG +C R LHS+E+NF+YKE G V+NELVK+R+C +CA+K+
Sbjct: 22 VTDQDVLRKHHRFVIHDED---------LSGME---NSWETRMSIKYYKKLFKEYALADMSRYREGKIGLRWRTEQEVVDGKGQFVCGNKKCDTRDGLHSFEVNFKYKEHGTVRNELVKLRLCRRCAKKM 139
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A5J4XDC1_9CHLO (FRA10AC1 domain-containing n=2 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC1_9CHLO) HSP 1 Score: 150 bits (379), Expect = 6.660e-37 Identity = 86/177 (48.59%), Postives = 110/177 (62.15%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEAL 935
++A+ RHQ L++N +Y+ P ++ TD + L+ Q+RFVR E+D +W+VRMA +YY LFKEYA+ADLSRYRE KVGLRWRTER+VV GKGQF CGA C ER+ L SYE+NF YKEAG K LVKVRVCP+ A +L K+ + L
Sbjct: 76 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDD--------------STDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 228
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A835Z2P9_9STRA (Folate-sensitive fragile site protein Fra10Ac1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P9_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.100e-36 Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGV--VKNELVKVRVCPQCARKLFRKKIEALRRR 944
M+AY +H+ L+R+Y ++ G + A P TD + L R ++F+RD+E A+A S+WEVRMA KYY+ L KEYA+ DLSR+R+ VGLRWRTE +V+ GKGQ+ECGA C R DLHSYE+NF + +A +NELVKVR+C CA+KL+ +K++ LRRR
Sbjct: 1 MSAYDKHKRLMRSYLQHKQEG---GGGGLPAGPE------TDMDILVRHNQFIRDEE-------------ADAKSSSWEVRMALKYYQRLCKEYAICDLSRHRDGAVGLRWRTEGEVLGGKGQWECGARGCDARDDLHSYEVNFAFVDAATREARNELVKVRMCADCAQKLYYRKLKELRRR 160
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A2P4XK42_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XK42_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.530e-36 Identity = 83/177 (46.89%), Postives = 108/177 (61.02%), Query Frame = 3 Query: 414 YARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRRR 944
+ RHQEL++ Y + +S P Q +D L+++ +F+RD E D AEA W+VRM+ +YY+ LF+EYALADLSRY+E K+GLRWRTE +V++GKGQF CG RC ER LHSYEL F Y E G K LVKVR C CA KLF KK+ ++R+
Sbjct: 16 FRRHQELMQLYSTSTRRSASIASTTSSITPHNDQASQSDLAVLKQKFQFIRDDEAD-----------AEAGEMDWQVRMSVRYYRQLFREYALADLSRYKEGKIGLRWRTEMEVIAGKGQFSCGNKRCDERTGLHSYELLFAYVEHGERKRCLVKVRACSVCAEKLFYKKLMEVKRK 181
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A1Y1IE55_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE55_KLENI) HSP 1 Score: 147 bits (372), Expect = 5.120e-36 Identity = 87/179 (48.60%), Postives = 112/179 (62.57%), Query Frame = 3 Query: 405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKL-FRKKIEALR 938
+NAY RH+ + +Y +++ + K A PV TD + LR +RF+R E+D AD S WE R+A +YY LFKEY +ADLSRY+E KVGLRWRTE++VV+GKGQF CG ER L SYE+NF YKEAG KN LVK+R+CP+CA KL +RK+ E R
Sbjct: 28 LNAYDRHKRFVEDYVKFYGDGKYEPPKA----PV-----KTDSDILRESYRFLRSDEDD-------------ADTS-WEARLAKRYYDKLFKEYCIADLSRYKESKVGLRWRTEKEVVAGKGQFICGNKEHGERNGLRSYEVNFAYKEAGEEKNALVKLRLCPKCAYKLNYRKEKELAR 183 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17118.1 >prot_C-linearis_contig98.17118.1 ID=prot_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=413bp MARRSEEYARLNDGGGYTQALTVGKGFSGEERRAAKQGGSSRGKGTGSSSback to top mRNA from alignment at C-linearis_contig98:281450..286432+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17118.1 ID=mRNA_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4983bp|location=Sequence derived from alignment at C-linearis_contig98:281450..286432+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:281450..286432+ >mRNA_C-linearis_contig98.17118.1 ID=mRNA_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2478bp|location=Sequence derived from alignment at C-linearis_contig98:281450..286432+ (Chordaria linearis ClinC8C monoicous)back to top |