mRNA_C-linearis_contig97.17106.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5K7Z6_9PHAE (DUF4440 domain-containing protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z6_9PHAE) HSP 1 Score: 200 bits (509), Expect = 1.210e-55 Identity = 105/186 (56.45%), Postives = 127/186 (68.28%), Query Frame = 2 Query: 371 GIMMNACKASGRTAARLGKGAMRPSVSKLPMRQLPAQIGASSFLSTANWSADQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADGWKIVSHHSSGMPAAPAGLK 928
G MNA S R+ + + A R + KLP+RQ+ Q + AN+++DQKAV AT NWRDTVTSNT+ APK+TAA+YA DALFWGTVSEQVR TP+HV DYF+FFAR PKL M +P ++HGD IH G YTF W ADG+ E AR+TF+YRRE W +V HHSS MP AP GLK
Sbjct: 34 GGSMNAL-LSTRSGLTVTQAATRLTAVKLPVRQMSGQADYA-----ANYTSDQKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLK 213
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.290e-52 Identity = 88/140 (62.86%), Postives = 106/140 (75.71%), Query Frame = 2 Query: 509 ANWSADQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADGWKIVSHHSSGMPAAPAGLK 928
AN++ADQKAV AT +WRDTVTSNT+ APK+TAA+YA DALFWGTVSE+VR TP+HV DYF+FFAR PKL M +P ++HGD +H G YTF W ADG+ E AR+TF+YRRE W ++ HHSS MP AP GLK
Sbjct: 9 ANYTADQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMIEHHSSAMPKAPPGLK 148
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 164 bits (416), Expect = 3.620e-40 Identity = 81/141 (57.45%), Postives = 97/141 (68.79%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG----WKIVSHHSSGMPAAPAGLKAV 934
DQKAV T W+DTVT TD APK+TAALYAPDA+ WGTVSE+VR TP+ + DYF+FFAR PKLR+ P V+V+G+ + G YTF WQ DG VE AR++F++RR G W IV HHSS MP APA LK V
Sbjct: 293 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKRARFSFTFRRGKPGSPQPWTIVEHHSSSMPIAPAELKPV 433
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 166 bits (419), Expect = 2.690e-39 Identity = 84/158 (53.16%), Postives = 107/158 (67.72%), Query Frame = 2 Query: 473 PAQIGASSFLSTANWSADQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG----WKIVSHHSSGMPAAPAGLKAV 934
P + A S +A + D++AV + T W+DTVTS T APK+TAALYAPD WGTVSE+VR TPQ + YF++FAR P+LR+ P V+V+GD + G YTF WQA DG+ VE AR++F++RR+ G W IV HHSS MP APAGLKAV
Sbjct: 155 PGSLRAPSPAKSATEAEDRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGAIVEKRARFSFTFRRDNPGTERPWTIVEHHSSSMPTAPAGLKAV 312
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 162 bits (409), Expect = 7.250e-39 Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG----WKIVSHHSSGMPAAPAGLKAV 934
D++AV + T W+DTVTS T APK+TAALYAPD WGTVSE+VR TPQ + YF++FAR P+L++ P V+V+GD + G YTF WQA DG+ VE AR++F++RR+ G W IV HHSS MP APAGLKAV
Sbjct: 27 DRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELKVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGTIVEKRARFSFTFRRDNPGTDRPWTIVEHHSSSMPTAPAGLKAV 167
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.250e-38 Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG----WKIVSHHSSGMPAAPAGLKAV 934
DQKAV + T W+DTVT TD APK+TAALYAPDA+ WGTVSE+VR TP+ + DYF+FFAR PKLR+ P V+V+G+ + G YTF W+ DG VE AR++F++RR G W IV HHSS MP APA LK V
Sbjct: 322 DQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRRGKPGSPRPWTIVEHHSSSMPDAPAELKHV 462
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 162 bits (410), Expect = 1.800e-38 Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG----WKIVSHHSSGMPAAPAGLKAV 934
DQKAV T W+DTVT TD APK+TAALYA DA+ WGTVSE+VR TP+ + DYF+FFAR PKLR+ P V+V+G + G YTF WQ DG VE AR++F++RR+ G W IV HHSS MP APA LK V
Sbjct: 287 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPV 427
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.510e-35 Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRRE----ADGWKIVSHHSSGMPAAPAGLKAVSN 940
D KAV + T W++TVT T+ APK+TAALYA DA+ WGTVSE+VR TP+ + DYF+FFAR PKLR+ P +V+G + G YTF WQ DG VE AR++F++RR+ W IV HHSS MP+AP GLK V N
Sbjct: 1417 DMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPDGLKRVEN 1559
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 151 bits (381), Expect = 1.140e-34 Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRRE----ADGWKIVSHHSSGMPAAPAGLKAVSN 940
+ KA + T W+DTVT T+ APK+T+ALY DA+ WGTVSE+VR TP+ + DYF+FFAR PKLR+ +P +V+G + G YTF WQ D VE AR++F++RR+ W IV HHSS MP+APAGLK V N
Sbjct: 292 EMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYTFAWQGNDDETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPAGLKRVEN 434
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.160e-32 Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 2 Query: 524 DQKAVLKATENWRDTVTSNTDSAPKETAALYAPDALFWGTVSEQVRTTPQHVDDYFEFFARNPKLRMTRLNPGMVQVHGDIGIHLGDYTFMWQAADGSDVEVDARYTFSYRREADG---WKIVSHHSSGMPAAPAGLKAV 934
D+K V + T W++ VT T AP++TA LYA D + WGTVSE+VR TP+ + DYF++FAR P LR++ P ++V+GD G YTF WQ DG E AR++F++R + + W IV HHSS MP +P LK V
Sbjct: 103 DRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHV 242 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17106.1 >prot_C-linearis_contig97.17106.1 ID=prot_C-linearis_contig97.17106.1|Name=mRNA_C-linearis_contig97.17106.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=257bp MVSPTQLPTLQTFTGIMMNACKASGRTAARLGKGAMRPSVSKLPMRQLPAback to top mRNA from alignment at C-linearis_contig97:424182..428912- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17106.1 ID=mRNA_C-linearis_contig97.17106.1|Name=mRNA_C-linearis_contig97.17106.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4731bp|location=Sequence derived from alignment at C-linearis_contig97:424182..428912- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:424182..428912- >mRNA_C-linearis_contig97.17106.1 ID=mRNA_C-linearis_contig97.17106.1|Name=mRNA_C-linearis_contig97.17106.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at C-linearis_contig97:424182..428912- (Chordaria linearis ClinC8C monoicous)back to top |