mRNA_C-linearis_contig97.17094.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.300e-72 Identity = 187/405 (46.17%), Postives = 215/405 (53.09%), Query Frame = 3 Query: 87 DFDDGEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITG-DSEKSTATP---------SAAGTGLMSKLASATSLFSRKKTPAPAPAA---------AHXXXXXXXXXXXXXXXXXXXXNSAQPSKSPLPPPPSRVAGEGKPEAGAPTSTNDKEGDWRPPQEPTTVQEAVTAXXXXXXXXXXXXXXXXXXXXXXXXXAAAPAAQTPAGTEIAEQTATGPSKSEDKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVLPELKVVTFEVREPSLGAAVVGHVAILEGSCYVWAGTEGSSAQGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244 D D G+ +IFD ATSKKI +EH++DM DAAKAIG R M LI G + + TAT S G L+ KL ATS FSRKKTPAP PAA A N+ S + L PPP+ VA G PE APT T P +EP+ + PA++T A E E ++ + VE EAVLPELK+V+F+VREP+LGA+VVGHV +L GSCYVWA TEGS AQGSLAAAVGTRFDGG+PTATPLLAGEGAGEAG GGV +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D Sbjct: 12 DTDVGDIDIFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRGLERQTMTATTRITQSLTAGSLHGGRLLRKLTPATSFFSRKKTPAPTPAAEPVAGPKPAAAPAPTAPTLEQLLLAELHMATNAQSSSNATLEPPPT-VAESGSPETAAPTET--------PSEEPSAADDVDVGRKPPPV----------------------PASETAAAGEP-EPARRLDAEGKGSVETARFTSRESAEPAPSPPAAAPTEDAGS--------------------EAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGE-GGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 363
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI) HSP 1 Score: 244 bits (624), Expect = 3.110e-72 Identity = 196/399 (49.12%), Postives = 222/399 (55.64%), Query Frame = 3 Query: 99 GEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITG-DSEKSTATP---------SAAGTGLMSKLASATSLFSRKKTPAPAPAAAHXXXXXXXXXXXXXXXXXXXX-------NSAQPSKSPLPPPPSRVAGEGKPEAGAPTSTNDKEGDWRPPQEPTTVQEAVTAXXXXXXXXXXXXXXXXXXXXXXXXXAAAPAAQTPAGTEIAEQTATGPSKSEDKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVLPELKVVTFEVREPSLGAAVVGHVAILEGSCYVWAGTEGSSAQGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244 G+ +IFD ATSKKI +EH++DM DAAKAIG R M LI G + + +TAT S G L+ KLA ATSLFSRKK PAP PAA +AQPS + P VA G PE APT T P+EP + XXXXXXXXXXXXXX PA + A + + + A S+ EAVLPELKVV+F+VREP+LGA+VVGHV +L GSCYVWA TEGS AQGSLAAAVGTRFDGG+PTATPLLAGEGAGEAG GGV +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D Sbjct: 2 GDIDIFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRGLEKQTTTATTRITQSLTAGSLHGGRLLRKLAPATSLFSRKKPPAPTPAAEPLAGSEPAAQAPTAPTLEQLLLAEIHMATNAQPSSAATLELPPAVAESGSPETAAPTETT--------PEEPPAADDVGDVGRKPPPVPASXXXXXXXXXXXXXXGEPEPARRLKAEGKGSVEPARSASRE---------------------------------PAEPAPSPPAAAPTKDAGSEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGG-GGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 358
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-9 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 3 Query: 948 ILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244 +L +C+VW G +GS A+ GS++ AV TR+D +P A+ L+ G G V MAQRL RTG+ VFVSC+L ED L A VE ++V L+ Sbjct: 41 LLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGSG-------DEVEQQMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREEQ 132
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: W4FSB2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB2_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.660e-5 Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 948 ILEGSCYVWAGTEGSSA-QGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLK 1235 +L +C+VW G + + GS++ AV TR+D +P A+ LL G A MAQRL RTG+ VFVSC+L ED L A VE ++ L+ Sbjct: 41 LLAHACFVWVGLDETPVCMGSMSTAVKTRYDP-LPLASSLLGG-------GADDTEQQMAQRLVLRTGKQVFVSCNLPEDDMELGAYVERAILQRLR 129
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 3.520e-5 Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 3 Query: 948 ILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244 +L +C+VW G + ++ GS++ AV T++D +P A+ L+ G E MAQRL RTGR VFVSC+L +D L A +E ++ L Sbjct: 36 LLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLIGGGNEMEQ--------QMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQES 126 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17094.1 >prot_C-linearis_contig97.17094.1 ID=prot_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=388bp MDFDDGEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITGDSEKSTback to top mRNA from alignment at C-linearis_contig97:353750..356287- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17094.1 ID=mRNA_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2538bp|location=Sequence derived from alignment at C-linearis_contig97:353750..356287- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:353750..356287- >mRNA_C-linearis_contig97.17094.1 ID=mRNA_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2328bp|location=Sequence derived from alignment at C-linearis_contig97:353750..356287- (Chordaria linearis ClinC8C monoicous)back to top |