mRNA_C-linearis_contig97.17089.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: D7FU12_ECTSI (GST N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU12_ECTSI) HSP 1 Score: 531 bits (1367), Expect = 2.570e-185 Identity = 262/325 (80.62%), Postives = 286/325 (88.00%), Query Frame = 3 Query: 45 MYSGVALVAATVLCGLQGSLGFLPVPSVAPAVSRQRYFTEVSMAVKVNDQLPADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANAFPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
M+S V+ +A +L G + FL S A AVS QR ++SMA DQLPADAKRYYVRPDR LDV+TSAPQLL RLGSGALVDGY K+SREEEGDEGEYAVVRALGFKVTERGNTWD+QQPRKPIEIYEFEGCPFCRKVREA+NI+D+DV+FYPCPQGGPTFRPKAK MG AFPYMVDPN+KTSM ESD+I+ YL+ETYGEGAKVPFQLSLG TTL+AGLGMLPR LKG +YTPAKMPKK LELWGYE+SPFTKVVREKL ELEIPHKF+SSARGSPKRQ+LYEMAGAGQTPYL+DPNTGAKGYESSEINDYLD TYAL
Sbjct: 1 MHSAVSAIATMLLVGRTAA--FLTSSSAAIAVS-QRSTNKLSMAATKPDQLPADAKRYYVRPDRFLDVLTSAPQLLFRLGSGALVDGYTVKVSREEEGDEGEYAVVRALGFKVTERGNTWDRQQPRKPIEIYEFEGCPFCRKVREAINIVDIDVVFYPCPQGGPTFRPKAKEMGTTAFPYMVDPNTKTSMPESDEIVKYLFETYGEGAKVPFQLSLGFGTTLSAGLGMLPRGLKGSKYTPAKMPKKPLELWGYEASPFTKVVREKLSELEIPHKFVSSARGSPKRQKLYEMAGAGQTPYLIDPNTGAKGYESSEINDYLDKTYAL 322
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A6A5MS47_LUPAL (Putative thioredoxin-like protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A5MS47_LUPAL) HSP 1 Score: 310 bits (793), Expect = 2.320e-98 Identity = 157/273 (57.51%), Postives = 189/273 (69.23%), Query Frame = 3 Query: 204 DAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
+ KR+ VRPD +V+ +A L+ R +G V GY F ++E G+YA++ G+K+ E +P KPIEIYEFE CPFCRKVRE V ILD+DV+FYPCP+ GP FRPK +G FPYMVDPN+ TSM ESDDII YL YG+G VPF LSLG +TTLTAG GML R+ KG +YTPAK+P K L+LW YE SPF K+VRE L ELE+PH IS ARGSPKRQ LY+ G Q PYL DPNTG +ES+EI +YL TYAL
Sbjct: 61 EPKRFEVRPDMRGEVLGAALPLIFRFATGVFVSGYSFSFVPKDEIPPGQYAMLEVNGYKLKETSKANLSPRPEKPIEIYEFESCPFCRKVREIVAILDIDVLFYPCPRNGPNFRPKVVEIGGKQQFPYMVDPNTDTSMYESDDIIRYLVGQYGDG-NVPFTLSLGFLTTLTAGFGMLARSGKGSKYTPAKLPPKPLKLWAYEGSPFCKLVREVLVELELPHVQISCARGSPKRQILYDKTGHFQAPYLEDPNTGIGMFESAEIIEYLKTTYAL 332
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: UPI001FB14667 (uncharacterized protein LOC124912054 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14667) HSP 1 Score: 309 bits (791), Expect = 5.100e-98 Identity = 157/275 (57.09%), Postives = 192/275 (69.82%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
P KR+ VRPD+ILD++ ++ LL RLG+GALV GY + E +YA+ A GFKV E + P KPIEIYEFEGCPFC+KVRE V +LDLDV++YPCPQ GP FRPKA MG FPYM+DPN+ +M ESDDII YL + YG+G VP LSLG++TTLT G ++PR +G YTP+++P K +E+W YE SPF KVVRE L ELE+PH S ARGSPKRQ L+E G Q PYL DPNTG K +ES+EI +YL TYAL
Sbjct: 66 PPKPKRFAVRPDKILDIMGASLALLFRLGTGALVSGYSVSFVPKNEIPSDKYALEFA-GFKVKETSKLGPR--PEKPIEIYEFEGCPFCKKVREIVAVLDLDVLYYPCPQNGPNFRPKAIQMGGKKQFPYMLDPNTGVAMYESDDIIKYLVQKYGDG-NVPIMLSLGLLTTLTEGFALIPRMGRGSSYTPSRIPPKPIEIWAYEPSPFCKVVREVLVELELPHLLYSCARGSPKRQVLFEKVGHFQAPYLEDPNTGVKMFESAEIVEYLKATYAL 336
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A2J6KUV4_LACSA (GST N-terminal domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KUV4_LACSA) HSP 1 Score: 307 bits (787), Expect = 2.310e-97 Identity = 156/275 (56.73%), Postives = 191/275 (69.45%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
P + KR+ VRPD++ DV+T++ LL R G+G V GY + E G+Y + G+ V E + P KPIEIYEFEGCPFCRKVRE V +LDLDV+FYPCP+ GPTFRPK MG FPYMVDPN+ +M ESDDII YL + YG+G+ VP LSLG++TTLTAG M+ R KG YT AKMP + LE+W YE+SPF+K+VRE L ELE+PH S ARGSPKRQ+L+E G Q PYL DPNTG K +ES+EI +YL TYAL
Sbjct: 70 PPEPKRFAVRPDKVADVITASLNLLFRFGTGVFVSGYSVSFVPKNEFPSGQYGLE-VSGYIVKESSKLGPR--PEKPIEIYEFEGCPFCRKVREIVAVLDLDVLFYPCPRNGPTFRPKVGQMGGKQMFPYMVDPNTGVAMYESDDIIKYLVQKYGDGS-VPLSLSLGLLTTLTAGFAMIGRMGKGSIYTKAKMPAQPLEVWAYEASPFSKLVREVLVELELPHILHSCARGSPKRQELFERVGHFQAPYLEDPNTGVKMFESAEIVEYLRATYAL 340
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A2K2A5Q3_POPTR (Uncharacterized protein n=9 Tax=Saliceae TaxID=238069 RepID=A0A2K2A5Q3_POPTR) HSP 1 Score: 305 bits (781), Expect = 1.240e-96 Identity = 153/274 (55.84%), Postives = 193/274 (70.44%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYA 1016
P + KR+ VRPD+ D++ ++ L+ RLG+G V+GY ++ +Y++ A G+KV E + P KPIEIYEFEGCPFCRKVRE V +LDLDV+FYPCP+ GP FRPK MG FPYMVDPN+ T+M ESDDII YL + YG+G+ +PF LSLG++TTLT G M+ R KG YTP+K+P K LELW YE SPF K+VRE L ELE+PH F S ARGSPKRQ L+E AG Q PY+ DPNTG + +ES+EI +YL +TYA
Sbjct: 57 PPEPKRFAVRPDKTWDIIGASLALIFRLGTGVFVNGYSVSFVSKDAIPPDQYSLEVA-GYKVKETSKLGPR--PEKPIEIYEFEGCPFCRKVREIVAVLDLDVLFYPCPKNGPNFRPKVAQMGGKQQFPYMVDPNTGTAMYESDDIIKYLVQKYGDGS-IPFTLSLGLLTTLTEGFAMIGRMGKGSSYTPSKLPPKPLELWAYEGSPFCKIVREVLVELELPHIFRSCARGSPKRQILFEKAGHFQAPYIEDPNTGVQMFESAEIVEYLKVTYA 326
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A804IFI6_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804IFI6_MUSAM) HSP 1 Score: 305 bits (780), Expect = 1.870e-96 Identity = 154/276 (55.80%), Postives = 191/276 (69.20%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAV-VRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
P + KR+ VRPD+ LD++ ++ L RLG+G V GY + E++ GEYA+ + L FK T N + +P KPIEIYEFEGCPFCRKVRE V+ILDLD+++YPCP+ P FRPK MG FPYMVDPN+ +M ESDDII YL + YG+G P LSLG++TTLT G M+ R KG Y+P+K P LE+W YE SPF K+VRE L ELE+PH F S+ARGSPKRQ+LY+ G Q PYL DPNTG K +ES+EI DYL TYAL
Sbjct: 58 PPEPKRFSVRPDKFLDILGASLALPCRLGTGVFVLGYSVSLVSEDKIPPGEYALKIAGLTFKET--SNLGAQARPEKPIEIYEFEGCPFCRKVREIVSILDLDILYYPCPRNSPNFRPKVLQMGGKQQFPYMVDPNTGVAMYESDDIIKYLVQKYGDGTT-PLMLSLGLLTTLTEGFAMIGRMGKGSSYSPSKTPPMPLEIWAYEGSPFCKIVREVLVELELPHIFRSTARGSPKRQELYKRVGRFQVPYLEDPNTGVKMFESAEIIDYLRTTYAL 330
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: UPI0012637800 (uncharacterized protein LOC116125376 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI0012637800) HSP 1 Score: 305 bits (780), Expect = 2.060e-96 Identity = 158/274 (57.66%), Postives = 190/274 (69.34%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYA 1016
P + KR+ VRPD++LD+V ++ LL RL +GA V GY ++E G+YA+ A GFK+ E + P KPIEIYEFE CPFCRKVRE V +LDLDV++YPCP+ GP FRPK MG FPYMVDPN+ SM ESDDII YL YG+G+ VPF LSLG++TTLT G M+ R KG YTP+K+P K LE+W YE SPF KVVRE L ELE+PH S ARGSPKRQ LYE A Q PYL DPNTG + +ES+EI +YL TYA
Sbjct: 63 PPEPKRFGVRPDKVLDIVGASLALLFRLATGAFVSGYSASFVSKDEIPPGQYALDIA-GFKLKETSKLGPR--PEKPIEIYEFESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVAQMGGKQLFPYMVDPNTGVSMYESDDIIKYLVGKYGDGS-VPFMLSLGLLTTLTEGFAMIGRMGKGSSYTPSKLPPKPLEIWAYEPSPFCKVVREVLVELELPHLLRSCARGSPKRQVLYEKAKHFQVPYLEDPNTGVQMFESAEIVEYLRATYA 332
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A1Y1IQL2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQL2_KLENI) HSP 1 Score: 304 bits (779), Expect = 5.060e-96 Identity = 154/272 (56.62%), Postives = 192/272 (70.59%), Query Frame = 3 Query: 207 AKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
AKR+ R D++L + ++ LL+RLGSGALV GY + +++ + Y++ R G + E+G P KPIEIYEFEGCPFCRKVREAV LDLDV+F+P PQ GPT+RPKA +G FPYM+DPN+ SM ESD+II+YL TYG+G K+ FQL LG +T+LTAGL MLPR KG Y PAK P K LELW YE+SPF K+VRE L ELE+PH + S ARGS KRQ+L++ G Q PYL DPNTGA +ES +I DYL+ YAL
Sbjct: 80 AKRFTPRGDKVLALAAASVPLLMRLGSGALVAGYSTSLEKDDSDPQSTYSLFRVAGRRFVEKGAA--HTLPAKPIEIYEFEGCPFCRKVREAVTFLDLDVLFFPTPQDGPTYRPKAIELGGKKQFPYMIDPNTGYSMYESDEIISYLSRTYGDG-KMAFQLKLGPLTSLTAGLAMLPRLGKGSSYRPAKKPAKPLELWAYEASPFCKIVREVLVELELPHVYHSCARGSAKRQELFDRTGIFQAPYLEDPNTGAAMFESGDIIDYLEKEYAL 348
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A6I9QCY0_ELAGV (uncharacterized protein LOC105033756 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QCY0_ELAGV) HSP 1 Score: 304 bits (778), Expect = 5.340e-96 Identity = 156/275 (56.73%), Postives = 190/275 (69.09%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
P KR+ VRPD+ LD+++++ L RLG+GA V GY E++ EY V+ G K+ E + P KPIEIYEFE CPFCRKVRE V+ILDLDV+FYPCP+ GP FRPK MG FPY+VDPN+ +M ESDDII YL + YG+G P LSLG++TTLTAG M+ R +G YTP+K+P LELW YE+SPF K+VRE L ELE+PH S+ARGSPKRQ+LYE AG Q PYL DPNTG K +ES+EI DYL TYAL
Sbjct: 71 PPQPKRFSVRPDKFLDILSASLALPFRLGTGAFVLGYSASFVSEDKISSNEY-VMSIAGLKLKEASKLGPR--PEKPIEIYEFESCPFCRKVREIVSILDLDVLFYPCPRNGPNFRPKVLQMGGKQQFPYLVDPNTGVAMYESDDIIKYLVKKYGDGTT-PLMLSLGLLTTLTAGFAMIGRMGRGSMYTPSKLPPVPLELWAYEASPFCKIVREVLVELELPHLLHSTARGSPKRQKLYEEAGHFQVPYLDDPNTGVKMFESAEIIDYLRATYAL 341
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Match: A0A5N6PGQ0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGQ0_9ASTR) HSP 1 Score: 303 bits (777), Expect = 6.630e-96 Identity = 157/275 (57.09%), Postives = 191/275 (69.45%), Query Frame = 3 Query: 198 PADAKRYYVRPDRILDVVTSAPQLLLRLGSGALVDGYRFKISREEEGDEGEYAVVRALGFKVTERGNTWDKQQPRKPIEIYEFEGCPFCRKVREAVNILDLDVMFYPCPQGGPTFRPKAKGMGANA-FPYMVDPNSKTSMGESDDIINYLYETYGEGAKVPFQLSLGIVTTLTAGLGMLPRALKGGRYTPAKMPKKALELWGYESSPFTKVVREKLCELEIPHKFISSARGSPKRQQLYEMAGAGQTPYLVDPNTGAKGYESSEINDYLDLTYAL 1019
P + K + RPD+I+D++T++ LL RLG+G V+GY + E G+YA+ A GF E + P KPIE+YEFEGCPFCRKVRE V +LDLDV++YPCP+ GPTFR K MG FPYMVDPN+ SM ESDDII YL + YG+G VP LSLG++TTLTAG M+ R KG YT AKMP + LE+W YE+SPF+K+VRE L ELE+PH S ARGSPKRQ+LYE G Q PYL DPNTG K +ES+EI DYL TYAL
Sbjct: 67 PPEPKLFTPRPDKIVDLITASLNLLFRLGTGVFVNGYSVSFVSKNEIPPGQYALGVA-GFVAKESSKLGPR--PVKPIELYEFEGCPFCRKVREIVAVLDLDVLYYPCPRNGPTFRRKVLQMGGKQMFPYMVDPNTGVSMYESDDIIKYLVQKYGDG-NVPLSLSLGLLTTLTAGFAMIGRMGKGSMYTKAKMPPQPLEVWAYEASPFSKLVREVLVELELPHILHSCARGSPKRQELYEKIGHFQVPYLEDPNTGVKMFESAEIVDYLRATYAL 337 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17089.1 >prot_C-linearis_contig97.17089.1 ID=prot_C-linearis_contig97.17089.1|Name=mRNA_C-linearis_contig97.17089.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=326bp MYSGVALVAATVLCGLQGSLGFLPVPSVAPAVSRQRYFTEVSMAVKVNDQback to top mRNA from alignment at C-linearis_contig97:315924..322157+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17089.1 ID=mRNA_C-linearis_contig97.17089.1|Name=mRNA_C-linearis_contig97.17089.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6234bp|location=Sequence derived from alignment at C-linearis_contig97:315924..322157+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:315924..322157+ >mRNA_C-linearis_contig97.17089.1 ID=mRNA_C-linearis_contig97.17089.1|Name=mRNA_C-linearis_contig97.17089.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at C-linearis_contig97:315924..322157+ (Chordaria linearis ClinC8C monoicous)back to top |