Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 587 |
| Cds size | 456 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930828.335559-UTR-C-linearis_contig97:281870..281971 | 1622930828.335559-UTR-C-linearis_contig97:281870..281971 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 281871..281971 + |
| 1690881270.8031216-UTR-C-linearis_contig97:281870..281971 | 1690881270.8031216-UTR-C-linearis_contig97:281870..281971 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 281871..281971 + |
| 1622930828.3800092-UTR-C-linearis_contig97:282427..282457 | 1622930828.3800092-UTR-C-linearis_contig97:282427..282457 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 282428..282457 + |
| 1690881270.8228228-UTR-C-linearis_contig97:282427..282457 | 1690881270.8228228-UTR-C-linearis_contig97:282427..282457 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 282428..282457 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930828.3576992-CDS-C-linearis_contig97:281971..282427 | 1622930828.3576992-CDS-C-linearis_contig97:281971..282427 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 281972..282427 + |
| 1690881270.8129184-CDS-C-linearis_contig97:281971..282427 | 1690881270.8129184-CDS-C-linearis_contig97:281971..282427 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 281972..282427 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17082.1 >prot_C-linearis_contig97.17082.1 ID=prot_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MEFHTSACTFSVCFAPAVFAVAGATGAAAATAGGARAGPPRRRVQQGHRP
LVNRSRSYIHALSLLLYLTYDVSRAASCCREHDDDVLKKICGVFSSPTPT
PTPTQLSLQLLTFADFALALPCHGVALLSSPATGGLQNRGRGNVPGRRRN
V* back to topmRNA from alignment at C-linearis_contig97:281871..282457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig97.17082.1 ID=mRNA_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at C-linearis_contig97:281871..282457+ (Chordaria linearis ClinC8C monoicous)
TCACGCATGCCTTTTGCCAGCAAACCCTTTCGAGATCCTCCCTGGTGATC
CCTCGGCACCGCTCGTACCCGCCGGCGAGGACGAGATGCTTGGGCCCTGC
CATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGCACCGG
CTGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGGCGGGC
GGGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCACCGCCC
GCTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACTGCTGT
ATCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGCACGAC
GATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACACCCAC
ACCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGATTTCG
CGCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCGCAACG
GGAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGGCGGAA
TGTATGATAGTTTCCAGAGGAAGGGGGGGGAAGGGGG back to topCoding sequence (CDS) from alignment at C-linearis_contig97:281871..282457+ >mRNA_C-linearis_contig97.17082.1 ID=mRNA_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig97:281871..282457+ (Chordaria linearis ClinC8C monoicous)
ATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGCACCGGC
TGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGGCGGGCG
GGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCACCGCCCG
CTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACTGCTGTA
TCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGCACGACG
ATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACACCCACA
CCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGATTTCGC
GCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCGCAACGG
GAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGGCGGAAT
GTATGAATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGC
ACCGGCTGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGG
CGGGCGGGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCAC
CGCCCGCTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACT
GCTGTATCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGC
ACGACGATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACA
CCCACACCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGA
TTTCGCGCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCG
CAACGGGAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGG
CGGAATGTATGA back to top
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