Homology
BLAST of mRNA_C-linearis_contig96.17053.1 vs. uniprot
Match:
D7G4B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B9_ECTSI)
HSP 1 Score: 90.5 bits (223), Expect = 4.870e-18
Identity = 77/185 (41.62%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 238 MAAVRGGSGGIEDELVGAAVQISELRQEKKRLTLARDSALVEIEEFKKIRVENSRQIQEHEARRAEVAATHAKELEDV-------KRNEREAIETAKKACAELQKRNEETTKLKTELSEAKAAAAETAAGPPV---NRRRVTATGLKPVSPGPVAAAAGGAGAPLRRGVRYAMDEGEEKDGNGGA 762
MAA+RGG GGIED+L+GA +IS+L +E K T+ RD A E N+R ++ HE R ++ HAKE+ED+ K+NEREAIETA+K AEL+ E K+KTEL NRRRVTA G++ +SP GG P G +YAM++GE+ +G G A
Sbjct: 1 MAAMRGGRGGIEDDLIGAVKEISKLSKENK--TVKRDLASAVSE--------NARLVKTHEDSRKKLELAHAKEIEDMTKAIEDAKKNEREAIETAEKTFAELKNCTIEKEKIKTELGXXXXXXXXXXXXXXXXXXNRRRVTAIGVRQISP------VGGGAGPKGGGSQYAMEDGEDDNGRGTA 169
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17053.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.87e-18 / Id = 41.62 Sequence D7G4B9_ECTSI
Match Name E-value Identity Description
D7G4B9_ECTSI 4.870e-18 41.62 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-02_002110.1 Exons 4 Model size 785 Cds size 783 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930818.9961827-CDS-C-linearis_contig96:577617..577890 1622930818.9961827-CDS-C-linearis_contig96:577617..577890 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 577618..577890 - 1690881266.0328906-CDS-C-linearis_contig96:577617..577890 1690881266.0328906-CDS-C-linearis_contig96:577617..577890 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 577618..577890 - 1622930819.0113916-CDS-C-linearis_contig96:578302..578401 1622930819.0113916-CDS-C-linearis_contig96:578302..578401 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 578303..578401 - 1690881266.0449998-CDS-C-linearis_contig96:578302..578401 1690881266.0449998-CDS-C-linearis_contig96:578302..578401 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 578303..578401 - 1622930819.0482054-CDS-C-linearis_contig96:578735..578775 1622930819.0482054-CDS-C-linearis_contig96:578735..578775 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 578736..578775 - 1690881266.057948-CDS-C-linearis_contig96:578735..578775 1690881266.057948-CDS-C-linearis_contig96:578735..578775 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 578736..578775 - 1622930819.087283-CDS-C-linearis_contig96:579636..580007 1622930819.087283-CDS-C-linearis_contig96:579636..580007 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 579637..580007 - 1690881266.0726354-CDS-C-linearis_contig96:579636..580007 1690881266.0726354-CDS-C-linearis_contig96:579636..580007 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 579637..580007 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17053.1
>prot_C-linearis_contig96.17053.1 ID=prot_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=261bp
HETGASRFVPLCFLAAISRGLERQHLTRCSASVHSAGKEGKKTACCGSFK back to top mRNA from alignment at C-linearis_contig96:577617..580007-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2391bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous)CATGAAACCGGAGCCTCCCGCTTTGTCCCACTCTGCTTCCTTGCTGCTAT
CTCTCGCGGACTCGAACGCCAGCACCTCACACGGTGCAGTGCAAGTGTAC
ATTCCGCCGGAAAAGAAGGCAAGAAAACGGCTTGCTGTGGTTCCTTCAAA
GGCCGAGAAATCGACGAGAGAGGAAAGCCTACTCTAGATTCCGCGCGTGC
TTTTGTCGGGAGGCCTGCACAACAGCAACAGCAAACCATGGCAGCCGTGA
GAGGGGGAAGCGGCGGGATCGAGGACGAGCTCGTCGGCGCAGCCGTGCAG
ATATCGGAGCTACGCCAGGAAAAGAAGAGGCTGACGCTCGCTCGTGATTC
AGCCCTGGTCGAGATCGAGGA GTGAGTGTGCCATTCCGGGAATACCTAAC
TGCCACGACGGCTGTTCGACCAGAGCAGCTTGCTGTGTGTCGCTTATCGC
CTGGTCGAATAAGAGGAGCCAAGCAGGGTTGTTGTAACAAGGATATCGGT
TTGTGTAGCTCGAGCTGGGGCTGGAGGTCGTATTGGTTTTGTTTTGGAAC
GGCGTATTTTGTGTGACAGCTTCCGTTCATGACGCCGAATACCACCTACC
CCCCCGAAACGGGTTTGGTATGTGGGAAGTGTGCGTGTGTGTGTGTGTGT
GTGGCGATTGATACTCGTCTTTTAGCTGCGTCGCAACGCGCTGCCAAGTT
CATTCCACAAGTGCATCGTCAGCCCTTCGTGCCAAACCCATCTCGGAGAA
GTGGCAATCCATTTGTAAGGCTGTAACATTTCGGCCAGGCGATGGGTCTG
CAGAGCTGTTGTAGCTGCCTTGCTGCTGCTTCCGCACCACACAGCAGTAA
CGGAGACATGGTTGAAAAGGGAGTGGACGACTCGTCCTCCTCTCTGCACT
TTTCTCGCAAAAAAATTGCTCCCGATGCAAGGAGAAGTGTTTTACGGAGT
GCAAATTGGGCCACTCACACGCACACACCCAGCACCTCGCTCGATGCCTA
ACTGATTGTGTGCGTCACATCCCTCTCGCAGACTTGCAAAAACGGTCTTA
AATTAGGCACTCCCTCCCGTAGAAAAATTGACCCTAGCTTCGGTTCCGTC
GACCCCCCGTTGCATGCGTATTCACGTTCCATCGAATGAAATGCTCCATA
CCTCTGTCTGACAAGCTCCTCTCATGGTGGTCTGTCGGTCATTATGTGTC
TCTCTCAACGGACCCATCGCATGTTCCGCCAGGTTCAAGAAGATTCGCGT
GGAAAACTCCCGCCAAATCCAG GTGCGGGGACTTTTGTTTTCCGTTTGTC
TTTCCCTGTACAAGTCGGAAGGCTTTGAGGAAGTGGATTGAGCGAAATAA
CTGCGCACGGTGTTTCGTCCTCCTTGTAGTGTGTCGCCGTGAGCTAGCGA
GTTGTTTGGTTGATTGACTCCTGTTGGGCCCAGCCAGACATTCAAAACAA
AACGCTGTGTTTTCAACCCCTTTCCCCTTTACTCCTGCCCATTTTGTGAC
GAATTTTTTGCCCTTCAGCCCGAATCACTGGCCGCCGTTGTTAGAATTTT
CTTGAGTCTTCCCCCTTGTTTCGCCCATGTATCTCACCTTGCCTCGCGTT
TCGCAGGAGCACGAGGCTCGCCGGGCGGAGGTAGCGGCGACCCACGCGAA
AGAGCTGGAGGACGTGAAGAGGAACGAGAGAGAGGCCATCGAAACGGCCA
AGAAG GTATGAGTACATAAATATAGAATGGTAGAGACACGCTGCTGCGTA
CATGCGGTCTTAGAGTTGTTCTTCGCGTGGAACATGCATGTGTCTAGCCG
CGTATGCCCCTCTACTTGGGCTGCAGATCATCGCGAAGTGGAAAAACATG
CCGTTACCGTGAATACAATTTTCTACCGCCACATAGTAGTGAGTCGACGG
GTCATAGCGTGTTTCATTCGTTTGTTTGTTTTCCCTCCCTCTCTCTCTAC
ATGCCTCTGTGTATCTCTCTCTCTCCCTTTCACGCACACACACGCACGCA
AACCCGGAAACACGACGTCTTTTGATGCGCCCCCTCCTGCCATCCCCCCA
GCCGCACTTACTTTTTTCTCGCCGTCCTTCTTTTACGTCTTCGCCACTCC
TCCCCCCCCCCCCCAAGGCGTGCGCCGAGCTGCAGAAGCGCAACGAGGAA
ACGACCAAGCTCAAGACCGAGCTGAGCGAGGCAAAGGCTGCGGCCGCCGA
GACAGCAGCAGGGCCCCCCGTCAATCGCCGCAGAGTTACGGCTACGGGGC
TCAAGCCGGTCTCCCCCGGGCCGGTGGCGGCGGCGGCAGGAGGAGCCGGG
GCGCCGCTGAGGCGTGGAGTCCGGTACGCGATGGACGAAGGGGAGGAGAA
GGACGGCAACGGGGGCGCTGTAGATGAAACCGAGGACGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig96:577617..580007-
>mRNA_C-linearis_contig96.17053.1 ID=mRNA_C-linearis_contig96.17053.1|Name=mRNA_C-linearis_contig96.17053.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at C-linearis_contig96:577617..580007- (Chordaria linearis ClinC8C monoicous) back to top