Homology
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
A0A6H5KRR0_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRR0_9PHAE)
HSP 1 Score: 435 bits (1118), Expect = 3.270e-141
Identity = 214/253 (84.58%), Postives = 233/253 (92.09%), Query Frame = 3
Query: 222 MAIMDVPTPVALLAGLLAMSLSAHYMTARSKTGVLGKVAALVNMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNAFTCAENSG 980
MA+++VPTP+ALL GLLAM+LSAHYMTARSKTGVLGK+AALVNMLCFLNASLGV V+MAL YLFVRPFS++TVRR+NSNFAEAMWADA+SAIMPP+KVVVTGEMPDDDTQAIVIANHQ VDCDWWFLFEL+RPLRRHGALKIILKDDQKH+PVTGWGMRGFGF+FLKRDW+KDRANLE+QLGVFTGDGFPLRLLIFPEGTTIN RSM+K FAKKEQRP FE LLLPRTTGFGACLNAF E+ G
Sbjct: 1 MALVEVPTPLALLGGLLAMALSAHYMTARSKTGVLGKMAALVNMLCFLNASLGVIVIMALTYLFVRPFSASTVRRLNSNFAEAMWADAMSAIMPPSKVVVTGEMPDDDTQAIVIANHQ-------VDCDWWFLFELMRPLRRHGALKIILKDDQKHIPVTGWGMRGFGFVFLKRDWVKDRANLERQLGVFTGDGFPLRLLIFPEGTTINARSMEKCTAFAKKEQRPRFEHLLLPRTTGFGACLNAFRRTESPG 246
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
K3X6I6_GLOUD (PlsC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6I6_GLOUD)
HSP 1 Score: 179 bits (454), Expect = 8.100e-46
Identity = 91/204 (44.61%), Postives = 130/204 (63.73%), Query Frame = 3
Query: 348 NMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQ-AIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNA 956
N+L FL S +N I+L VRPF +A RR+ ++ +++W D S+ P AK+VVTGE+P D T+ AI+IANHQ VD DWW++++ R + G +KI+LKD K+VP+ GWGMR F F+FL+R D +++ + GD +P L+IFPEGTTI++ + KS FA+K RP F R+LLPRT+G L+A
Sbjct: 10 NLLWFLCNSAVINFCQFTIWLLVRPFDNALYRRLMGSYVQSLWVDVASSCFPEAKLVVTGEIPTDKTRPAIIIANHQ-------VDADWWYIWQAARAYKGAGNIKIVLKDQLKYVPIIGWGMRLFEFLFLRRSIDHDSKHIKAYMDSLIGDDYPFWLVIFPEGTTIHKEYVVKSQAFAEKLNRPKFNRVLLPRTSGLQIILDA 206
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
W7THY1_9STRA (Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THY1_9STRA)
HSP 1 Score: 183 bits (464), Expect = 1.630e-45
Identity = 92/197 (46.70%), Postives = 128/197 (64.97%), Query Frame = 3
Query: 372 SLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEM----PDDDTQAIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACL 950
S G+N++ L+YL VRP+S T RR+ N+ ++MW +S +MPP+++V++G++ D AI+IANHQ VD D+W+ +E+ R + G LKIILK + VPV GWGMR F F FL+R+W +DR L + L F DG LL+FPEGTTIN S+ KS FA+++ RP + LLLPR+TGF ACL
Sbjct: 116 SFGLNILNFLVYLTVRPWSRRTARRLIGNWFQSMWVSVMSYLMPPSELVLSGDVFPKTMDSTRPAIIIANHQ-------VDADFWYCWEVARAHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWEQDRRGLTRLLSSFMEDGLNCALLLFPEGTTINTESLAKSHRFAQQQSRPRLKHLLLPRSTGFAACL 305
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
A0A835ZF56_9STRA (Acyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF56_9STRA)
HSP 1 Score: 176 bits (447), Expect = 1.680e-45
Identity = 85/171 (49.71%), Postives = 117/171 (68.42%), Query Frame = 3
Query: 441 RRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLN 953
R++NS +A+ ++ +S ++PP ++VVTG+ D +QAIVIANHQ VD DWW+ + LLR + K ILK D +P+ GWG++G FI L+RDW D+ +L +QL VF D PLRL+IFPEGTT+N S++KS FA+K+ RP +RLLLPRTTGF ACL+
Sbjct: 18 RKLNSQYAQLLFVRGISYVLPPVEMVVTGDEFCDGSQAIVIANHQ-------VDADWWYPWCLLRAYGQDAYAKFILKADLGRMPLVGWGLKGLDFIMLRRDWQVDQKHLMQQLQVFVHDDTPLRLVIFPEGTTMNTTSLEKSTAFAQKQGRPELKRLLLPRTTGFAACLD 181
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
G4YYH8_PHYSP (PlsC domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YYH8_PHYSP)
HSP 1 Score: 174 bits (442), Expect = 3.640e-44
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 3
Query: 348 NMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIV-IANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNAFTCAE 971
N+L L S +N + ++ VRPF RR+ + A+A+W D S P K+ V+GE+P D T+ ++ IANHQ VD DWW++++ R G +KI+LKD K++P+ GWGMR F F+FL+R +D A+++K +G DGFP L++FPEGTTI+ + KS FA +E RP FER+LLPRTTG L+A A+
Sbjct: 11 NLLWILCNSACINFLQFCLWCLVRPFDKPLYRRLMGSVAQALWVDVTSTSFPQTKLSVSGELPQDPTRPVILIANHQ-------VDADWWYIWQAARHQSAAGNIKIVLKDQLKYLPIIGWGMRLFQFLFLRRRIDEDAAHIKKYMGGLIADGFPFWLVLFPEGTTIHSEYVVKSQAFAAREGRPKFERVLLPRTTGMQIILDAVADAK 212
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
A0A3M6VNZ5_9STRA (PlsC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNZ5_9STRA)
HSP 1 Score: 174 bits (440), Expect = 6.770e-44
Identity = 84/207 (40.58%), Postives = 131/207 (63.29%), Query Frame = 3
Query: 339 ALVNMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIVI-ANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNA 956
+++N+L L + +N + +Y VRPF+ R++ + A+++W D SA P K+ +TGE+P D T+ I++ ANHQ VD DWW++++ R + G +KI+LKD K++P+ GWGMR F F+FL+R +D+ ++++ + DGFP L++FPEGTTI+ + KS FA +E RP FER+LLPRTTG L+A
Sbjct: 8 SVLNLLWILCNGVCINFLQFCLYCLVRPFNKVLYRQLMGSMAQSLWIDVASASFPQTKLSITGELPSDPTKPIILLANHQ-------VDADWWYIWQAARQQKAAGNIKIVLKDQLKYLPIIGWGMRLFEFLFLRRRVDQDQEHIKRYMNGLITDGFPFWLVLFPEGTTIHSEYVTKSQTFAAREGRPKFERVLLPRTTGMRIILDA 207
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
V9ENB2_PHYPR (PlsC domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9ENB2_PHYPR)
HSP 1 Score: 172 bits (436), Expect = 2.130e-43
Identity = 87/204 (42.65%), Postives = 127/204 (62.25%), Query Frame = 3
Query: 348 NMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIV-IANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNA 956
N+L L S +N + ++ VRPF+ A RR+ + A+++W D S P K+ VTGE+P D T+ ++ IANHQ VD DWW++++ R + G +KI+LKD K++P+ GWGMR F F+FL+R +D +++K +G D FP L++FPEGTTI+ + KS FA +E RP FER+LLPRTTG L+A
Sbjct: 11 NLLWILCNSACINFLQFCLWCLVRPFNKALYRRLMGSIAQSLWVDVTSTSFPQTKLSVTGELPWDPTKPVILIANHQ-------VDADWWYIWQAARHQQAAGNIKIVLKDQLKYLPIIGWGMRLFQFLFLRRRIDQDAEHIKKYMGGLIADKFPFWLVLFPEGTTIHSEYVTKSQAFAAREGRPKFERVLLPRTTGMQIILDA 207
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
A0A0L0G5H1_9EUKA (PlsC domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5H1_9EUKA)
HSP 1 Score: 170 bits (431), Expect = 1.550e-42
Identity = 101/209 (48.33%), Postives = 130/209 (62.20%), Query Frame = 3
Query: 378 GVNVVMALI---YLFVRPFS-----SATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMP------DDDTQ-AIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFER-LLLPRTTGFGACLNA 956
G+NV+M + +LF+ P + S+ R SN +AMW D VS +P +V++G+MP DDD AI+I+NH VD DW+ L+ L R HG +KIILKD KH+PV GWGM+ F FIFL RDW KD+ NL K L F D PL LL+FPEGTTI + S++KS+NFAKK R F++ LL PRT GF ACL+A
Sbjct: 26 GLNVLMTSVGINFLFMGPGAIVWSYSSRHYRFFSNILQAMWIDGVSYGLPAPVLVISGDMPPMKQNLDDDVHSAIIISNHT-------VDYDWYCLWLLGRARGYHGVMKIILKDSLKHLPVFGWGMQYFEFIFLARDWSKDKHNLYKLLRSFVHDDMPLWLLLFPEGTTICKESLEKSSNFAKKSGRRVFDKHLLSPRTRGFDACLDA 227
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
A0A5D6XVN4_9STRA (PlsC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVN4_9STRA)
HSP 1 Score: 168 bits (425), Expect = 5.330e-42
Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = 3
Query: 348 NMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQ-AIVIANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNA 956
N+L L S +N +++L VRP A RR+ + +A+W D + P AK+VVTGE+P D + I+IANHQ VD DWW++++ G +KI+LKD K+VP+ GWGMR F F+FL+R D A+++ + GD +P L+IFPEGTTI+Q + KS FA+K RP FER+LLPRT+G L+A
Sbjct: 10 NLLWILCNSAVINFCQFVLWLLVRPLDGALYRRLMGSLVQALWVDVAATCFPDAKLVVTGEVPKDTARPVIIIANHQ-------VDADWWYIWQ--------GNIKIVLKDQLKYVPIIGWGMRLFEFLFLRRSIDHDSAHIKAYMDSLIGDDYPFWLVIFPEGTTIHQEYVAKSQAFAEKLNRPKFERVLLPRTSGLQIILDA 198
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Match:
H3GD51_PHYRM (PlsC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD51_PHYRM)
HSP 1 Score: 166 bits (419), Expect = 3.900e-41
Identity = 84/204 (41.18%), Postives = 124/204 (60.78%), Query Frame = 3
Query: 348 NMLCFLNASLGVNVVMALIYLFVRPFSSATVRRMNSNFAEAMWADAVSAIMPPAKVVVTGEMPDDDTQAIVI-ANHQARNYHSQVDCDWWFLFELLRPLRRHGALKIILKDDQKHVPVTGWGMRGFGFIFLKRDWLKDRANLEKQLGVFTGDGFPLRLLIFPEGTTINQRSMDKSANFAKKEQRPTFERLLLPRTTGFGACLNA 956
N+L L S +N + ++ VRPF+ RR+ + A+A+W D S P K+ V+GE+P D + ++I ANHQ VD DWW++++ R + G +KI+LKD K++P+ GWGMR F F+FL+R +D +++K + D FP L++FPEGTTI+ + KS FA +E RP FER+LLPRTTG L+A
Sbjct: 11 NLLWILCNSACINFLQFCLWCLVRPFNKPLYRRLMGSVAQALWVDVTSTSFPRTKLSVSGELPSDPQRPVIILANHQ-------VDADWWYIWQAARYHKAAGNVKIVLKDQLKYLPIIGWGMRLFQFLFLRRRIDQDEEHIKKYMNGLITDDFPFWLVLFPEGTTIHSEYVTKSQVFAAREDRPKFERVLLPRTTGMQIILDA 207
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17050.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.27e-141 / Id = 84.58 Expect = 8.10e-46 / Id = 44.61 Expect = 1.63e-45 / Id = 46.70 Expect = 1.68e-45 / Id = 49.71 Expect = 3.64e-44 / Id = 42.58 Expect = 6.77e-44 / Id = 40.58 Expect = 2.13e-43 / Id = 42.65 Expect = 1.55e-42 / Id = 48.33 Expect = 5.33e-42 / Id = 43.14 Expect = 3.90e-41 / Id = 41.18 Sequence A0A6H5KRR0_9PHAE K3X6I6_GLOUD W7THY1_9STRA A0A835ZF56_9STRA G4YYH8_PHYSP A0A3M6VNZ5_9STRA V9ENB2_PHYPR A0A0L0G5H1_9EUKA A0A5D6XVN4_9STRA H3GD51_PHYRM Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 440.7 Seed ortholog evalue 5.2e-121 Seed eggNOG ortholog 2880.D7G4B3 Preferred name LPGAT1 KEGG rclass RC00004,RC00037 KEGG ko ko:K13514,ko:K15176 KEGG Reaction R09036 KEGG Pathway ko00564,map00564 Hectar predicted targeting category signal peptide GOs GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0012505,GO:0016020,GO:0016021,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0036148,GO:0036149,GO:0042171,GO:0042175,GO:0042304,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0046471,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0047144,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0062012,GO:0062013,GO:0065007,GO:0071617,GO:0071704,GO:0080090,GO:0090407,GO:0098827,GO:1901576 EggNOG free text desc. 1-acylglycerol-3-phosphate O-acyltransferase activity EggNOG OGs COG0204@1,KOG1505@2759 COG Functional cat. I Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko01004,ko03021 Exons 9 Model size 2614 Cds size 834 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930826.2574315-UTR-C-linearis_contig96:502481..502702 1622930826.2574315-UTR-C-linearis_contig96:502481..502702 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 502482..502702 + 1690881269.9288888-UTR-C-linearis_contig96:502481..502702 1690881269.9288888-UTR-C-linearis_contig96:502481..502702 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 502482..502702 + 1622930826.3963344-UTR-C-linearis_contig96:506463..506470 1622930826.3963344-UTR-C-linearis_contig96:506463..506470 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 506464..506470 + 1690881270.0060506-UTR-C-linearis_contig96:506463..506470 1690881270.0060506-UTR-C-linearis_contig96:506463..506470 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 506464..506470 + 1622930826.4645789-UTR-C-linearis_contig96:507491..507608 1622930826.4645789-UTR-C-linearis_contig96:507491..507608 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 507492..507608 + 1690881270.017736-UTR-C-linearis_contig96:507491..507608 1690881270.017736-UTR-C-linearis_contig96:507491..507608 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 507492..507608 + 1622930826.4818063-UTR-C-linearis_contig96:508008..508082 1622930826.4818063-UTR-C-linearis_contig96:508008..508082 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 508009..508082 + 1690881270.0287316-UTR-C-linearis_contig96:508008..508082 1690881270.0287316-UTR-C-linearis_contig96:508008..508082 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 508009..508082 + 1622930826.4969406-UTR-C-linearis_contig96:508693..510054 1622930826.4969406-UTR-C-linearis_contig96:508693..510054 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 508694..510054 + 1690881270.0388498-UTR-C-linearis_contig96:508693..510054 1690881270.0388498-UTR-C-linearis_contig96:508693..510054 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 508694..510054 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930826.2777681-CDS-C-linearis_contig96:502702..502800 1622930826.2777681-CDS-C-linearis_contig96:502702..502800 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 502703..502800 + 1690881269.9423697-CDS-C-linearis_contig96:502702..502800 1690881269.9423697-CDS-C-linearis_contig96:502702..502800 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 502703..502800 + 1622930826.2940464-CDS-C-linearis_contig96:504331..504461 1622930826.2940464-CDS-C-linearis_contig96:504331..504461 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 504332..504461 + 1690881269.954721-CDS-C-linearis_contig96:504331..504461 1690881269.954721-CDS-C-linearis_contig96:504331..504461 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 504332..504461 + 1622930826.3098435-CDS-C-linearis_contig96:504768..504912 1622930826.3098435-CDS-C-linearis_contig96:504768..504912 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 504769..504912 + 1690881269.9664388-CDS-C-linearis_contig96:504768..504912 1690881269.9664388-CDS-C-linearis_contig96:504768..504912 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 504769..504912 + 1622930826.328806-CDS-C-linearis_contig96:505419..505586 1622930826.328806-CDS-C-linearis_contig96:505419..505586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 505420..505586 + 1690881269.9752827-CDS-C-linearis_contig96:505419..505586 1690881269.9752827-CDS-C-linearis_contig96:505419..505586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 505420..505586 + 1622930826.3571625-CDS-C-linearis_contig96:505876..506003 1622930826.3571625-CDS-C-linearis_contig96:505876..506003 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 505877..506003 + 1690881269.9850643-CDS-C-linearis_contig96:505876..506003 1690881269.9850643-CDS-C-linearis_contig96:505876..506003 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 505877..506003 + 1622930826.37915-CDS-C-linearis_contig96:506295..506463 1622930826.37915-CDS-C-linearis_contig96:506295..506463 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 506296..506463 + 1690881269.9952257-CDS-C-linearis_contig96:506295..506463 1690881269.9952257-CDS-C-linearis_contig96:506295..506463 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 506296..506463 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17050.1
>prot_C-linearis_contig96.17050.1 ID=prot_C-linearis_contig96.17050.1|Name=mRNA_C-linearis_contig96.17050.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=278bp
MAIMDVPTPVALLAGLLAMSLSAHYMTARSKTGVLGKVAALVNMLCFLNA back to top mRNA from alignment at C-linearis_contig96:502482..510054+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17050.1 ID=mRNA_C-linearis_contig96.17050.1|Name=mRNA_C-linearis_contig96.17050.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7573bp|location=Sequence derived from alignment at C-linearis_contig96:502482..510054+ (Chordaria linearis ClinC8C monoicous)CTCCCGCAAAACACGCCCGGCAGGTGCCTCCTTGGCACCGAAGGACAGCA
TAAAGGAGGTACAGGGCGCTGGTCTTTCGGCTCCCGGGCGCGCGCCGAAC
GCAAAGGAGAGAGAAAAGAGAGAAGGCTTTTGGGGATCGGATCCCTTGTG
CGCACGTGTCTTGGACGTTTTGCAGACAGCGGCGACAGAGCGCGCGCGCG
AGAGCTTCGTGTCGGGAGGCG ATGGCGATCATGGACGTGCCTACACCCGT
TGCACTCTTGGCTGGATTGCTGGCGATGTCTCTGAGTGCACATTACATGA
CCGCACGCAGCAAGACGGG GTGAGTTTAGAAACTCGCTTCGCTCGAATAA
ATGAGCTGGAAATCTTGAACCTGAAGATAGATACTCTGCACACAGAAGTA
GTGCATCAATCAAGCCTCAGTGCCTCCGCTGCTCCTGCTGAGCCTGCACC
ACGGTCAGGGAGAATGAAACCAGCGCAGCTTTCAGTTTTAGCAAGCTTGA
TGCCGCTGGACCTGCAGTTTATTCTTTTCAGCACTATCAATACGTACGCA
CTGACACGATACAGCAGTACACGTTTTTCATAAACCTTATCGAAAAGGGT
CGGTTCTCGTCGCGTCTCAGCCACCGCCTGTTTTCGTTACAGTACAGAGC
AGCAGCGTACTTGTAGCGCTTCATCGTGCACTCACACCCCCTGCTTCAGC
AAAAATTTCGGCGGTTTATCCCGTATCCCGTCGTGACACATTTCCTGTGA
CAGAACGAAGTGCAGTTTCTCTCTCCGAAGCCAATGGGACATCGATGCGC
CTTATTTATACCTCTGGCGGATGTCACTCCGCTACTACTCCATCGAGCAG
AGCATGCAGTGTTTTTGTCTCTTCGAAGCGAGAGCGTGTGTACACATGTG
GCACGAAGCTGAGCCCTTGTGAGTAGCTTTTACTGCTACGTCTTCGGTGT
GTGCGGTTTGCACCATGAGCGAATGCATGGCCTCTTTTGCGCAACACCAT
GAGCAACTTTCAAAATCTCGAATGGGTTGGTTTTTAAATTCGTACTGCCT
GTAGGTGCGTTCCCTGCCCCTGGTGTTTACAACCAGTAGATACCCTTTCG
GATGCCCTGACTGAAGGAATCACGTCATCTCTTATCTACACAGTTCCTTG
CGCCTACCACCACCAGCGTGTTGTTTTCACTGTATTGGGACGAGCTCCTG
CTTTGCATCAAAGACGATCACCCGATACCTCAAGTCGTCTCCCGGCCGGA
GCCCCGAGGTACGCAGATCTTGCGCGGTACTGCTGTACACCACGATATCT
TCCTCGAGCGTGGGTTAAGAGATTGCTGCTGCTGTTGGTGGGAACCAACA
CTGCTGTGCTTGCAGCAAAATATGGGCCCAGCGGAATTTGAAGTTGGTGC
ATCCGCTACCCTTGAGCTTCAAATGTCGCTGGTTTTCTCTCTTGGAACGG
GCAGGGTTAAAGGGTTTTGTGTCGTGTTAATTGTCTCACTAAGTACGTGA
GGGACGGCCTGTTGGACACCGGCGCTGTGTTGGGTCTGATCGCTACACAC
TACACACTAGTCTGGCAACCTTAACAGCAGTCTACTTTGGCATGGACGCT
CTCTAGTTGGGTCTGATCCCTACACACTAGACTGGCCGAAGCAGTCACGA
GTCTGGCAACCTCAACAGCAGGCTACTTTGGCATGAACGCTGAAGACCTC
CCGTTGTGTCGCTGTGTAAAATCGCCCACAAACAACCCCCATCAGCACGT
CACGCATCTAGGCGACCTGGCCGTTAATTCAACCAAACACAACTATTTAC
GCGCGTGTGTGCCGTAAACCATACCTGATATGCTTTTCGTTGTCGGGCAG
GGTGCTTGGCAAGGTGGCCGCACTGGTGAACATGCTGTGCTTCCTGAACG
CGTCCCTGGGAGTCAACGTGGTGATGGCGCTGATCTACCTCTTCGTTAGA
CCCTTCAGCTCCGCCACCGTGCGCAGGATG GTGAGACAGAGAGGCAGACG
AGAGGCACAAGGGGGGCAGTGGGACAGCGGGAGGTGCTTAGTACGCATTG
GGCGGTGTGCTTCGGCGTTGAGGCCTTCAGGACCACCTCGCGCTTTACGT
ATCAAACCAACCAGTCATCATCGGCACACGAAGCCACACCACAACTTGTT
TTGGCGAACACGTGAGCTGTGTGACGTTCGACCTTGGGAAACGTTTCAGG
AGAGCTGTTGGAACCGTGCTTTCAACCTTCACCCCCCATACTTTCCCCCT
TGTGCGTTATCTGATGTATCCTGTGTGTAACGATCAGAACTCGAATTTTG
CGGAGGCGATGTGGGCGGACGCGGTGAGCGCGATCATGCCGCCGGCGAAG
GTGGTGGTGACGGGGGAGATGCCGGACGACGACACACAGGCCATCGTTAT
CGCCAACCACCAGGCGAGAAACTATCATAGC GTGGTTGTTGTTGGGCTGC
TGTCATCGACGCAGTATTGTAGTGTAGTTGTTGTTAGGCTCGGTTTTGGG
TAGTGGTGTTGTTGACTTATGATGAGGATGAGAGTCAACGAGGGCCCTGC
TAAAGTGTTTTCAGGGGGGTTTCGTGTCGTTGCTTTGGGGCCGTATCCCC
CCCCCCCCCATACGAAGTATACCCCCAACACAGCAGGTGATGTGCTTACG
TTCGAATGGGCGGCGAACGGGTCCCCAGTCTTAACACCGTGCCAAGCCTT
GCTTCTTTCTCGCTGTTGCTGTTGCAAGGGTTTTGGTGGAAGGTTTCTTC
TTTGTTTGGTTCTGGTTCCACAAAACAAGCAACGAAAAAGGAGGTTCTCT
GTTGCGGTATATATCTCAGCCAATGGTCTTTGTTCGTTCATGCGCGACGG
TTCAGCTTGCTGACCGGGGTGCTCCCTCATCCTCTGCTCTCGCTGCAACT
CATACCTGTCTGGCTGTCTGGCTGTCTGCCGGTTCAAGCAGGTAGACTGC
GACTGGTGGTTTCTGTTCGAGCTGCTGCGACCGCTGCGGCGGCACGGCGC
TCTGAAGATCATCCTGAAGGACGACCAGAAGCACGTCCCCGTGACCGGCT
GGGGCATGCGCGGCTTCGGTTTCATCTTCCTCAAGAGAGACTGGCTCAAG
GACAG GTGGGTTGTCTACCCAGCAGTGGCGGGGAGAGAAGGGACACTGCG
CGTGTAGCCGGTTATTTGATCGATGTTGTCGTTGCTGCACATCCTCCGGC
CGGCCCGCCCCCGCCGACGTTGGCGCTTCTGCTGCCAGAAATCTGCAATG
GTGTGCTGTAGGTGCTGTAGGTGCTGTAGGTGCTGTTGCTGCTGTTGCTA
CTGTTGCTGCTGGCATTCAGTTTCTTCTGGTTGCCTTTTTATTGCTCGTG
ACTCCTGCGTTGTGTCTTCGGTGCGGGCGGCGTGTTTGGTCGCAGGGCTA
ACCTGGAGAAGCAGCTGGGCGTGTTCACCGGCGACGGGTTCCCTTTGCGG
CTGCTCATCTTCCCCGAAGGGACCACCATCAACCAGCGCTCGATGGACAA
GAGCGCCAACTTTGCCAAGAAG GTACGCATACTTGGTTGTTGTGCATCCA
TTAGAAATTCTGCACGAGTCTGTAAGCCAGCGCAAGCCATTTGGCTTGAG
ATTATTTTCTCTGGGTTATGTCGGCTAACAGGACGCGGTATCGCAGGGGC
GGGTCTCCGTGTGTGGTTGTTCTCGAGATGTGTACTCTGTGTTTCTTCAG
TTAGAGTGGCGTCACCCCCCCCACTTGCACACAGCAGCGCAGTGCTTCTT
ACTATATAACTTTTGCCCCCCACCCCGCCCTGTCCCGCGCCTCCAATAAC
CACAACCACGACAGGAACAACGGCCAACGTTCGAGCGCCTCTTGCTGCCG
CGAACGACGGGGTTCGGCGCTTGCTTGAACGCCTTCACTTGCGCCGAAAA
CTCGGGGGCCGGCGGAGGCGATGGCGGGGGGGGGGGGGGAAGAACAGGGG
GGGCGGAGGTGCTCGAACCGTGTGGTGTATGA CGTGACG GTGAGTCTTGG
TAGGCTACAGTGTGTCTTCGGGATGTGGGCTTGGCCGCTCAGTGAAGACG
GTCCTGTCTCTTGTGTGTGTACGCTTGTGGCGAGGGCCATGGGCGGGGCC
CTAACTCGCCGCTTCCAGTCGTGGCTTAATATATATTTTATTTTTATACA
TCTGGATGGTCCGTTCGCAAGGCACTGGTCTCGGGATCGACGTTTTTTTT
TTTTTTTTTTTAACCTATTCAAACCTGCCTGCGTTTGGGTGCTCTGGACG
CGCTACAAGATAATGATAGTCGACGATACCGTGCATGACGTTCTTTCGTT
ATTTCAGTCCAGACAGCAAGGGCCGTTGTCGCTGAGATGGGGATTGACTT
TTTTTTTTTTATTCTTGGTGGCGACGGCTTTTTTTTTCTGTCGCGCTGGT
GCTCTCGTTCTGCCTCCGTTCTAAGAGAACGAAATAGGTTGGTGGCGTTC
TTTCGCGGGGCCGATGCTAGATCGTCGCCTCACTACTCTACCCTCACCCA
AATCCCAAACCTCTCACACAAGCGTTGGGCCTGCTTTGTTTATTAGCTGC
TGATGTTGCATTTTTTTTCACGACCCACCCCGAGCTCTGCAAGGTTGTTT
TTGCACGTACCCGTCCCATCCACCCCTTCCGTCACCCGCACTTTTTGTTG
GAGGTACGTCCAGCACGATTTTTGCAGGCCTCCTTTGTTTGGGGGCGTTG
TCTCGTTGTCCCTCTGCCCAGATCGCTGTCGTTGCTGACAGCGGGCAGAT
GGGCACGGTTGTGTGCGTTACCCCCCTGCCCGCTACGTTTATTTATTCTC
CAACTTTCCGACTTCCAGACACGACACGGCCGAAAAGCATCTTCCGCATC
TGGAAGTGTCTCGTTTCGCCCCGATCCGATGTCTTGACCATCCATCGCAT
CCCATCTCATGGCGTCGCCGTCCTTCCTGCTCTGTTGTTTTCTCTCCCTC
CCCGTCCCCGTCCCCCTCCGCCTCCGCCTCGGCCTGTGTCTGTGTGTCTT
GTCTCTCCAGATGGCGTACAGTGGCTACAGCGGGGAGATCCCCACCTGGG
AGATGGGCTACACGCGGGATAGGGACGTCGACATCCCCAACCTGGGGGCC
CTGCTCAAGGGCCGTGCTCCCGGACCG GTGTGTGTCTACAGCACTTGTTT
GTTTGTTGTTGTTGACTTAAGAGTTTTGTTTGCAACCTCGTGGCCACGGT
TGCGCCGTGGTTTGCCGTTTTTCCGGAAACGTGTGTCTCTCTGATATAGT
GCGTAAGTAGTTGCGTTTTACCTCCCTTCGGCTCCTCGGAGCGTGGCACG
GACAACTTCCACACTAACGCGCAAGATGCGTTCGCGCGCCCTTTCTTGCG
GGCATCCGTCACCGCAGGGTAGTCTTTCCCAGATCACCATCCAGAGATGG
ACGTCGATAGTAGGATCAGACGTTTCTTGTGCTTTTCCTTTGTCGACCGT
GTGCACGTCGATCGCCCGGCACTTGTTCTCGCCCCGGGCGGAACCATCCG
CGAAATCGTTTGTTTTTTATTTTCCAGGTGCACCTTCACGTAGAGAAGCA
CCACGTTGAGGACATCGCCGGGGACGGAAAGGCCTGGCTCGATGCCACCT
G GTGAGTCCGTTTCATTCCCCGATCTCCGAAGATCATAGTCGATGTCACG
CAATCTTAATCTTTGGTCGGTCTCGACGCGCATGGCACCGAACCCCTGAC
AATCGAAGCACAGCCGGTGCGTGGCTAGTTTGTTTTGAGTGCGCTGCTTT
GGGTCACAGACCATCCATCTACGACCCGGCTTGGGGGGGAGGAATTGGAA
AAGTCGCTACTGCCACGAACTTGCGTCGGACTTGCAATTTGTTCGTTTGA
CCCGAGAGCTTTCGTTCACGATCTCGAACCTCCATGAGTGCCTCAACGGC
AGGACCGTAGTTTGCGGTATCACCGAGGGCCGCGAATCTGTTTCAACACC
TCCTGAAAGTCCAAACCGGCCACCAGCCGGGGAAAGCCCTAGACAAGGAG
CCTTAAGCACGAACACAGCGGGCGATGCTGGGTCCAATGTTGATATAGTA
TTCCAAGCTTTCTGCACGCTTCACAGTTTCCCCGCCCGAAACCCACCTGC
TGCTCCTCGTAGACCGCGGCCCGGCTCGTCCCCCACACTCGCACCCCCTC
ACTTCGCCACGAATCCCCTCGTTTGCCACGCGCGACCCGTTGCCAAACCT
CGCTCCCTGCAGGGCCCGCAAGGACGCGCTCTTGCAGAGGTTCATCGAGG
ACGGTCGTTTCCCGCACCAACCGGTGGCCGTCTACGAGTCGCGGAAGAGC
CCGATGGCCTTCCTGTCCCTGTCCGCTACGCCCATCGTCGCCTTCCTGCT
GCTCTACTACGGCATCACCGACGCCGTGGCGCTGCTGGCGGCGGCGGGGG
TGACCGCGGCGGCGGGCGGGGGCGGCGGCGGCGGCGGCATCGTGGAGGGC
ATCACCGAAGGCGCTGCTGCCGCTGCGTCCGGGTCAATAAGCGCATAGGT
GGCAGTATGTAATGTAGGGCCTCGACTTGTTGTGTTGGCCGCAAATCGAA
AGCGTAGAGGAGCGGTCTAAACCTTGCTTGTTGAACCCGGAACAAAGCGT
ACAAGGGGCGGGAAGGAGGGCTTTTCGATTTTTTGTGGGATTTCGGAATC
CGGAAATTTTGACGTTTTTTGTTTCGGGGGCACGTGCGGATCTCGATCGG
GACCACAACACGCTCTTTATCGGAAAACGTGAGTTCGGCGAAGTATGTGG
TGTGCGTTTGTTGACCAAGTCTTGTGTGTCTTGTGCGTTTCGTCGGCCCC
TATACCAGATGGTGGCATGCGTTGCTCACGCATGAACACACTTGAACGCT
CGGAATGTGTGATAGATAGAATGCCTTGTCGTACGATGTGGGGGCGGCAG
TAGCAGCAACCCCGCCCTTTGCTCGGGCAAGTAAGTTTTGCAAGTCGGAG
CCGGTCTGGGTGGTGACGGCGGCCGTTTTTTGAGCAGGAAGAGCCCGAAG
TGGCTTTGCTGCTGCTGCTGCTGCTGCTGTCAAGTTGCGTGTGGGCCGGA
TGCCTAAGGCGAGATGGGACAATGCGATGAACAGGGTGAATCAGGAGTAG
CGTACCAGTGATTTGTATGGCGCTGCTGCTTGGCTGAAAATTTCAATTTT
CGTTCTTTGGGGCAGCGGATTGGGCGTCCCTCTCACTTCTCATATTGTAT
GTGTTTGCCACTCCTGTCGCGTTAATTTTTGCATTATTAAGACCCAGGTG
TTCTCTGAACATCTCTGTCTGGAGCTGTTGTAGTCTCGGGGAGTATCTGT
TGCTTGGTGTCATCTCGTATGTATGGCGGTCGCCTACATGAAATCCCGGC
GTTGTACGCGCGAAAGTAGCTTATTAGCGCAGTTCTGCCGATGACGCTCA
CTGCCAGGGCACGCGAAATATGAGCAATGGGCTCTTGTTGACGTGTTCCA
TAAAATATGGCATCTACACAGAGGATACGAATGCTGCCCCCCCCAGCGTC
CACTGGTTGGTGAACGTACCGCCCGTCGATCGTGCTCCACGTACATTTCA
AGCTGGCTCTTTGCCGTTGACGT back to top Coding sequence (CDS) from alignment at C-linearis_contig96:502482..510054+
>mRNA_C-linearis_contig96.17050.1 ID=mRNA_C-linearis_contig96.17050.1|Name=mRNA_C-linearis_contig96.17050.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at C-linearis_contig96:502482..510054+ (Chordaria linearis ClinC8C monoicous) back to top