Homology
BLAST of mRNA_C-linearis_contig96.17047.1 vs. uniprot
Match:
D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)
HSP 1 Score: 274 bits (700), Expect = 4.130e-78
Identity = 147/202 (72.77%), Postives = 170/202 (84.16%), Query Frame = 1
Query: 337 LAEAARCIEAQTPWYETL---YEEVADGGGDLAVDTILTFSVMSSLIEATNETVLAPVFVALKGLLGAVQGAAAAREEIVELIRYCVGISRCLLEAAKVEHMPRSIVVSLEEFKGEIEAMERFV--YGTRPSGCC-RRMVLSSYDRDTAAGHKRKLKGLLDAVLAGLAVQTNQAINELEDMIRARDPPPLAAMALIPREAPI 924
LAEAAR +EA+TPW+E L Y++VADGGGDL V+TIL F+V S LI A NETVLAPVFV LKGLLGAVQGAAAAREEIVEL RYCV +SRCLL+AAK + MP +I +LEEFKGE+EA+ RFV YGTR SGCC RRMVL+++DRDTAAGHKRKLK LLDAVLAGLA QTNQ +N+++ MI ARDPP L A+A IPREAP+
Sbjct: 40 LAEAARRMEAETPWFEKLGLRYQDVADGGGDLTVETILAFNVASGLINAANETVLAPVFVVLKGLLGAVQGAAAAREEIVELARYCVAMSRCLLDAAKADVMPETIKSTLEEFKGEMEAVGRFVQTYGTRSSGCCWRRMVLNAHDRDTAAGHKRKLKDLLDAVLAGLAAQTNQGLNQIKGMILARDPPSLGALAEIPREAPV 241
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.13e-78 / Id = 72.77 Sequence D7FH19_ECTSI
Match Name E-value Identity Description
D7FH19_ECTSI 4.130e-78 72.77 NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 273.1 Seed ortholog evalue 1.4e-70 Seed eggNOG ortholog 2880.D7FH19 KEGG ko ko:K10407 KEGG Pathway ko05132,map05132 Hectar predicted targeting category other localisation EggNOG free text desc. determination of stomach left/right asymmetry EggNOG OGs COG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759 COG Functional cat. C Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko03019,ko04812 Exons 3 Model size 1375 Cds size 816 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930826.0110855-UTR-C-linearis_contig96:493988..494388 1622930826.0110855-UTR-C-linearis_contig96:493988..494388 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 493989..494388 - 1690881269.767395-UTR-C-linearis_contig96:493988..494388 1690881269.767395-UTR-C-linearis_contig96:493988..494388 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 493989..494388 - 1622930826.0609639-UTR-C-linearis_contig96:496528..496687 1622930826.0609639-UTR-C-linearis_contig96:496528..496687 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 496529..496687 - 1690881269.8212273-UTR-C-linearis_contig96:496528..496687 1690881269.8212273-UTR-C-linearis_contig96:496528..496687 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 496529..496687 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930826.0253015-CDS-C-linearis_contig96:494388..495030 1622930826.0253015-CDS-C-linearis_contig96:494388..495030 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 494389..495030 - 1690881269.7828875-CDS-C-linearis_contig96:494388..495030 1690881269.7828875-CDS-C-linearis_contig96:494388..495030 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 494389..495030 - 1622930826.0380216-CDS-C-linearis_contig96:495448..495550 1622930826.0380216-CDS-C-linearis_contig96:495448..495550 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 495449..495550 - 1690881269.7966552-CDS-C-linearis_contig96:495448..495550 1690881269.7966552-CDS-C-linearis_contig96:495448..495550 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 495449..495550 - 1622930826.0496798-CDS-C-linearis_contig96:496456..496528 1622930826.0496798-CDS-C-linearis_contig96:496456..496528 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 496457..496528 - 1690881269.80739-CDS-C-linearis_contig96:496456..496528 1690881269.80739-CDS-C-linearis_contig96:496456..496528 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 496457..496528 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17047.1
>prot_C-linearis_contig96.17047.1 ID=prot_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MPHSSAAAASPAPAATVGQRSSQQQCWLKQQPVEERRSVRRARRGTSPTG back to top mRNA from alignment at C-linearis_contig96:493989..496687-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17047.1 ID=mRNA_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2699bp|location=Sequence derived from alignment at C-linearis_contig96:493989..496687- (Chordaria linearis ClinC8C monoicous)TCGATCACAGGAGAAGGCAAGGTTGCAGCAAGCCAGCTCAGAGCTCCTAC
CGCGACATCGAACAGGCTATGTTCGACGGTGGTGTTGTTGACAAAGACAA
TACGCCGCCAACTCGAACTCAGCAGGTGGTGACCTCGGCTGCGGGATAGT
CCAACTGCC ATGCCGCACTCTTCCGCCGCCGCTGCTTCTCCGGCACCAGC
AGCTACCGTGGGCCAGCGGAGCTCACAACAG GTGACACCCGGGTAGCCGC
GCTGCAATACCTCGCTCGAAAGCTCGAGAGCTCGAGAGCTCCTAACAACA
ACCAACCCTTATTTATTAGGGCCATTTTTTATCGAACAAGTTTTTTCGTT
TTTTCACGGATTCGTGAATTCGGGAAATTATACTCCGTATTATTTTCCTC
GAATCCGAGGAAAACAGGGCTGCCTACGCACAGAAAGTAAGATTATATAG
GAAATAGACCCTAACCCCAACCACCGACCCCAATCTAGCCGGTTCCATAC
TTTATCCCATATGTTTTGTTACTCACAAACCTGCGTAGGCTACTGGGAAA
ACAAGGGCGGCGAAAAAAACGCGGCTGTTCACCTCACGAATCCGAGGAAA
CAGAGGAGGGATCGGGCAGACGCGGTAGGAGGGCTGATCTTACGCACAAA
AGTGTGCAAAACTTGTCCCAACCCCTCAGAGGGTCAGTCACAGGCCGCTA
CCAACAAAAAAAATGTCACGAGTCGATGGTTTTGCTGTTGTTGTGGGATG
AGTTGCTCTGTGCCCGCCAAAGCGACCCAAAGTCCAACACGATGATCAAC
TTCACGATATCACCTATAATGGGGCATGCCAGAGGATAATTCCTTCTGTC
GGAAACAGCTAGCCTATCGTACTATCGGCGAATAGTGTGCAACCAGTTGC
TTGAGTCCTTCGGTGAGGCTAGACGAGAGGGTAGTCGCAATAGCAGAGGA
CCTGAGGGGATACAGGTATGCGATAAGAATGCGGCGGAATTTTTCACGAA
TCCGTGGATTTCCTAAAAGCCCCCTGTCTACATACGTATACTTGGTAATG
TATTCTTCTCTACAATACGTACTCCCCACTAACATTCTCCCTGCACAAAC
GCTTGTGTGTGTGGGTCTACCAATCCTCGGGGTTCAGCAATGCTGGCTGA
AGCAGCAGCCAGTAGAGGAACGCCGGTCGGTTCGCAGAGCGAGGAGAGGA
ACATCTCCAACGGGGATGGCGTTTACGACCATTTTGAGA GTACGTACAAG
GAGTGTTTTGCAGTATTTCCCAAAATGGCATCACTGCGTCCATGGTCCAG
GCCGTGCTACCATATCAAGCCGGCCACCGTATGTGAAGCCTTTCCGTAAC
CCTGATTGCAGTGGAGCTGTAGGTGGAAAACCTACTCTATTTGAGCAGGA
GACGTTAGTACTGCTGTAGCATACTCCGAGTACACACTACCGCACGATGT
TCTGTCCGCGTCACTGCTTTGTTGAACATGCTTCAGGGTGAACGATCAGT
TTTGGTCTGGCAGGGTATGACCTACTGCTGTGTGAAGTACTTCATCCGGG
AGCAGGAAAGGTGGAGCCGCCTTGATGCGATGTTACCCCTGAAAAGCCAT
CTCGTGTCGACCACTTGACAACACATTCCGGCCCCTCTCTTTTGGTGTGT
GGTGCAGCTGCTTGCGGAAGCTGCTCGGTGTATCGAAGCCCAAACGCCGT
GGTACGAGACGCTGTACGAGGAAGTGGCAGACGGGGGCGGGGATTTGGCC
GTCGACACCATCCTCACTTTCAGCGTCATGAGCAGCCTGATCGAAGCCAC
CAACGAGACCGTGCTGGCTCCCGTGTTCGTCGCTCTGAAGGGACTACTGG
GCGCCGTCCAGGGAGCTGCGGCGGCTCGAGAAGAGATTGTGGAGCTTATC
CGGTACTGCGTGGGTATCTCGAGATGCCTGCTCGAGGCGGCGAAGGTGGA
GCACATGCCCAGATCGATCGTGGTATCGCTTGAAGAGTTCAAGGGCGAAA
TCGAGGCGATGGAAAGGTTCGTCTATGGCACCCGACCGAGTGGTTGCTGC
AGAAGGATGGTCCTCAGCTCTTACGATCGCGACACCGCTGCGGGCCACAA
GCGCAAGTTGAAAGGTTTGCTAGATGCGGTGCTGGCCGGTCTCGCTGTCC
AGACCAACCAAGCGATTAACGAGCTTGAGGACATGATTCGTGCTAGGGAC
CCCCCACCTCTAGCTGCGATGGCACTGATTCCTCGCGAAGCACCTATATC
GTGCCCGCGACCTACGTGCAAAGGGCCGGAATGTTTGAGGGAATGGTAG C
TGACCTCACAAACTCCGAACGTGCAGCATCCGCCGCACACTGTCTGCTGG
GGATGGGGGGAGGGGGAAATACTCTCACGGTTTCGTCGGTGGTGCGAGAT
GACCGCGTGCGGATCAGCTTCAAGAATGGCATATTTTGGTGTGTACCTTA
GGGTTGTCCTCGCTCCCCGCAAATGCCAATGTTTTGTGTTGTCAACCGGT
CAAAAAGTGGTGCTACGCGCGTTTGGACAGGCGTAGGGGAAAATGACTTT
CCGCCGTAGATACCCAAATCGGGTACCGGGAATGTAGACTTGTGCTACGA
ACGAGTTGGCTCGCGAGAAGGCACTCACAGCTTGGTGCCTAGTATCCTTC
AACTGAAATCTCTGCCAGGGGTACCATGAGCGTGATCTGAAATCGGAAC back to top Coding sequence (CDS) from alignment at C-linearis_contig96:493989..496687-
>mRNA_C-linearis_contig96.17047.1 ID=mRNA_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig96:493989..496687- (Chordaria linearis ClinC8C monoicous) back to top