mRNA_C-linearis_contig96.17034.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: D7G485_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G485_ECTSI) HSP 1 Score: 332 bits (851), Expect = 6.310e-104 Identity = 253/467 (54.18%), Postives = 288/467 (61.67%), Query Frame = 1 Query: 1 GVMRRXXXXXXXX--APKSLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSR----GDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSL-------PSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPP----------LTGRG----KLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFFGGNRSG-AAGSARP 1317 G+MRRXXXXXXXX A K LRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAP P + G+G RGG G +E S +D R G+D GT +RD PAT AK +T DN P R ++RPRQS AAVTGELYREGGG+ RFWRGFAPSLILTCNPAINYTAFD+LKA+WLRRRDAAA + AG G + A GT GFLNPLEAF VAAAAKSLAT++TYPLIRAKVVLMT+ SSPS+ SSPAV P ++ G +GS GS + G RDG D R N E A ++ RG ++A E ++ +A GR G M TVL++IFRREG GGLYAGCGAQLLHTILKSALLLA KEQIARAAASA+F GG+ G AAG A+P Sbjct: 172 GLMRRXXXXXXXXXXASKPLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPQRTPSVENNDGEGAG-----ERGGHG--AMEGSSPLDGRRCGVGND-TNGT--WRDPVPATTAK----------VTQAGGDNQAPIKRGQRRPRQSVAAVTGELYREGGGLGRFWRGFAPSLILTCNPAINYTAFDILKALWLRRRDAAAVA-AGVGSSTTAGASXXXXXXXGTEGFLNPLEAFLVAAAAKSLATLVTYPLIRAKVVLMTAPSSPSAPIVDRGRGNCSSPAVP----PAASASQLITPKGHVFGSCGSGKIGEPTGEG----RDGGDERLSNNGEERAATAXXXXADADATGMSDRGGSGHPIDASLGSAAAESTVAASSASAVGRGEGTTGGEMHSMATVLVDIFRREGIGGLYAGCGAQLLHTILKSALLLATKEQIARAAASALFLGGSSRGRAAGFAKP 609
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A835YZE1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE1_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.800e-27 Identity = 124/412 (30.10%), Postives = 166/412 (40.29%), Query Frame = 1 Query: 64 LNLLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSRGDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQ-----------SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAAS 1266 L+LL AA+AGA+N TLP++N+ TR+QTA P R G+ + + G ++ A D+ GD + AP + GG + T+ R+ S +A +L+ EGG + RFWRG PS+ILTCNPAINYTAFD LKA +L R V G G FL PL AF +AAAAK++AT++TYPLIRAKV++MT + RT E GP + + L +I R EG GLYAGCG QLLHTILKSALL+A +E++A+ +A+ Sbjct: 124 LSLLTAALAGAINMLLTLPIDNVCTRLQTADAPAQPPARRDGESKA---AVTHGETAQQTPSAVEAGDAGGDG---------NGAPQQQQHSEDVSVGGTPVATSLREXXXXXXXXXXXXXXXXXXXXXXXXXSLSAAVADLHDEGG-VPRFWRGLLPSMILTCNPAINYTAFDALKAAYLARW----------------VNRGRPPGHHAE--FLGPLAAFGLAAAAKAVATLVTYPLIRAKVIMMTRK-----------------------------------------------------------RTA------------------EQGPGD----------------------------LMQCLADIARLEGLHGLYAGCGGQLLHTILKSALLVASREEVAKGSAA 399
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S2UVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVH3_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.070e-16 Identity = 81/261 (31.03%), Postives = 109/261 (41.76%), Query Frame = 1 Query: 487 WRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPA-VDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVV----PPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIAR 1254 W G PSL+L NPAIN FD +K +WL++R G R +L P+EAF VA+ +KSLATV+TYPLIR K++LMT + + S V IP GDD A T +GV ++G +V PL+ T+ R I +VA +F EG G YAGCG QL++++ K A+LLA KE + R Sbjct: 218 WNGLGPSLVLALNPAINMACFDRIKEMWLKKR-----------------------GIRNEEDYLGPIEAFLVASFSKSLATVLTYPLIRIKILLMTQNNLKTKFAEKSQVIVHTKCSQCRAIPKAEGDDSPE-------ALTPAPTDGV---------------DMGCMVCCCDQPLSD--------TDSRCGGIQQAVA-----------------------RVFEEEGLLGFYAGCGGQLMYSVCKGAMLLAAKEDVTR 402
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: M4BP29_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BP29_HYAAE) HSP 1 Score: 83.2 bits (204), Expect = 8.040e-14 Identity = 83/280 (29.64%), Postives = 113/280 (40.36%), Query Frame = 1 Query: 442 VTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKA-IWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278 + ++Y E G M+ FW+GF PSL+L NP+INYT FD LK+ + L + A A A + L LEAF +AA AK++ATV+TYP+IRAKV LM ++ P+ TEP+ P + AA+ GSS M VL I EGF G Y GC AQL++T+LKSALL+ KE+I + A++ Sbjct: 162 IARDIYAENGWMS-FWKGFIPSLVLVSNPSINYTIFDRLKSQLQLSKMAAGKAKRASS---------------------LTALEAFVLAAIAKAVATVLTYPVIRAKV-LMQAQKEPT--------------------------------------------------------------------------------TEPQKNPSSHHQAAM---------GSS---MIQVLKRIGESEGFNGYYKGCSAQLVNTVLKSALLVMTKEEITKHTMRALYL 326
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: C1EJC5_MICCC (Mitochondrial carrier family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJC5_MICCC) HSP 1 Score: 81.3 bits (199), Expect = 5.740e-13 Identity = 77/277 (27.80%), Postives = 116/277 (41.88%), Query Frame = 1 Query: 427 QSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSG---TGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248 Q A E+Y +GG A FW G PS +L NPAIN+ AFD LK ++ R G GG G T L PLEAFF+ AA+K++AT IT+PLIRAKV++M++ + ++ A+ G++ + RG R G+ L + + + + G E + + + VE VL + + EG GGLY G G QL + + +A++ +EQ+ Sbjct: 168 QGLVATAREVYAKGGAPA-FWAGLGPSCLLVVNPAINFAAFDRLKLLYNR-----------------GFKGGKGRKLTANEAANMSLGPLEAFFIGAASKAIATSITFPLIRAKVLMMSA---------------------------DKENNAKKGNKKDDGRKSPGRTDRRG-RSPSPGKDLPSSKPDSELHRRIGA----------LTEKVRARLEFVE-----------------VLNDAIKAEGIGGLYKGLGVQLSRSAVAAAIMFMTREQL 371
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S4D6P2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6P2_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 7.920e-13 Identity = 87/299 (29.10%), Postives = 127/299 (42.47%), Query Frame = 1 Query: 481 RFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSP---SSLP--------------------------SSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIAS-SVAAVEGGRDGEVEGSSTR-------------GMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248 R W+G APSL+LT NPAINYT +D LK + + R A+ A +G + G LEAF +A+AAK +AT++TYPLIR K + M ++P SLP S+S A +S P S +P D R S G +H + ++ ++ V R +E G + ++ S + + R E E S + G+ + ++F+ G LY GCG QL+H +LK A LL +KEQI Sbjct: 75 RLWKGVAPSLLLTVNPAINYTIYDRLKQLIINFRRQQQATNATSGTSKIGA-----------------LEAFLLASAAKIIATLVTYPLIRVKAIQMAEEATPVTQQSLPINAVPVTQVCTAANRKRLDFEGASTISNSDAESENSAPKSCLPNNPYDMKHRCYSPGK----EHPDEKKTQRQSDLEFKSPV-------------RAAVEKGSVQRSIQMFEELSASKDQETRYEETEHDSNKLVLNMGSEKPLRPGVVALAQQLFQE---GALYRGCGGQLVHVVLKGAFLLMVKEQI 336
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A8H8SFA4_9AGAM (Mitochondrial carrier protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SFA4_9AGAM) HSP 1 Score: 80.5 bits (197), Expect = 9.640e-13 Identity = 93/285 (32.63%), Postives = 119/285 (41.75%), Query Frame = 1 Query: 430 SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGS-RGSVAK-TQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278 SF V E+ RE G ++ W G PSL+LT NPAI Y AF+ +K++ L GS T L P +AF V A +K+LATV+TYP I AKV L +RSSP S D DS S L N A G+ S A+ T+H N + R V LT PRV+ S+VA +L + R EGF G Y G GAQ+ +L ALL +K+Q R A + F Sbjct: 169 SFVDVGREIVREDG-VSGLWAGLQPSLVLTVNPAITYGAFERIKSLMLA---------------------GS------TSSKLTPGKAFLVGALSKTLATVVTYPYIMAKVRLQ-ARSSPIS-------DDTDSGVESDTELVNVQQSAEEGTLAASYAEVTKHGENATHPSQ-----RPQV----------LT-----------PRVKAQRSAVA--------------------LLTRVLREEGFIGWYQGMGAQITKAVLSQALLFMLKDQFERYALLIMIF 371
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A024GMU3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMU3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.120e-12 Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 439 AVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSS 786 A+ E+Y E G + FWRG+AP+L+LT NP+INYT FD LK R + A QR T LEAF +AA +K++ATV+TYP+IRAKV++ + + S Sbjct: 161 ALGSEIYHEDG-LTAFWRGYAPALVLTSNPSINYTIFDTLKDTLQRWKRTALTKHC----------------QRAT---FTALEAFLLAAISKAIATVVTYPIIRAKVLMQSEKHS 256
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A8H3HM18_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3HM18_9AGAM) HSP 1 Score: 78.2 bits (191), Expect = 5.310e-12 Identity = 79/283 (27.92%), Postives = 115/283 (40.64%), Query Frame = 1 Query: 430 SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278 SF V E+ +E G +A W G PS++LT NPAI Y AF+ +K++ L A+A+S L P +AF V A +K+LATV+TYP I AKV L +S S L SS + + ++ ++G S V K+ H V V GP + ++P S+V +L ++ R +G G Y G GAQ+ +L ALL +K+Q R A + F Sbjct: 166 SFVNVGREIVKEDG-VAGLWAGIKPSMVLTVNPAITYGAFERIKSVLL----ASASSSK-----------------------LTPGKAFLVGALSKTLATVVTYPYIMAKVRLQAGSASGSGLDDSSSESESE-----LSEIKGAEEGGLAASYAEVTKSGHNVTRV-------------------------------PGPPKNSMKPEKSAVR--------------------LLAKVLREDGLLGWYQGMGAQITKAVLAQALLFMLKDQFERYALVIMLF 364
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S2PU97_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU97_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 6.580e-12 Identity = 103/393 (26.21%), Postives = 148/393 (37.66%), Query Frame = 1 Query: 70 LLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSRGDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248 LL A + +N A TLP + I++R+Q G S+V+ ++ ++ +V RGD+ + GT + L I + + +LP +++ ++ + ++ + W G P+L+L NPAI YT F+ LK L+ R S G R L EAF +K AT++TYPLIRAKV+LM S SP V D DD GS GS +G NDE A P R + +L+ IFR +G GLY GC QLLHTI+KSAL+L I+E+I Sbjct: 138 LLLTAFSAMINTAITLPFDTISSRIQA---------------GHQSNVVSD----KDELQNQSIV--RGDNNLNGTREKEKLF----------------IKQFSLNTNLPKEAFQRKNTTAYNIDEEKRNQQLRTVLSLWNGLLPALLLCTNPAIQYTMFENLKTALLQHR----LSQLQQGSKR-----------------LTMGEAFVFGLISKFFATIMTYPLIRAKVMLMVS----------SPDVFED------------DDCNEVGSNGS------------------NGNAKSNDETRAKKYP---------------------------------------RSLPLLLISIFRNDGIRGLYRGCSVQLLHTIMKSALMLMIRERI 393 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17034.1 >prot_C-linearis_contig96.17034.1 ID=prot_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=443bp MRRRAAAGGGGAPKSLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPback to top mRNA from alignment at C-linearis_contig96:220438..222512- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17034.1 ID=mRNA_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2075bp|location=Sequence derived from alignment at C-linearis_contig96:220438..222512- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:220438..222512- >mRNA_C-linearis_contig96.17034.1 ID=mRNA_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2658bp|location=Sequence derived from alignment at C-linearis_contig96:220438..222512- (Chordaria linearis ClinC8C monoicous)back to top |